# Assembly name: klBraLanc2.hap1.1 # Organism name: Branchiostoma lanceolatum (amphioxus) # Taxid: 7740 # BioSample: SAMEA111562176 # BioProject: PRJEB76728 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2024-06-21 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAXLOF01 # Assembly method: various # Genome coverage: 75x # Sequencing technology: PacBio,Arima2 # GenBank assembly accession: GCA_964187965.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964187964.1 Primary Assembly ## GCA_964187966.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ076729.1 <> na Primary Assembly 44722045 na SUPER_2 assembled-molecule 2 Chromosome OZ076730.1 <> na Primary Assembly 40944537 na SUPER_3 assembled-molecule 3 Chromosome OZ076731.1 <> na Primary Assembly 34894719 na SUPER_4 assembled-molecule 4 Chromosome OZ076732.1 <> na Primary Assembly 32855996 na SUPER_5 assembled-molecule 5 Chromosome OZ076733.1 <> na Primary Assembly 27244774 na SUPER_6 assembled-molecule 6 Chromosome OZ076734.1 <> na Primary Assembly 24617022 na SUPER_7 assembled-molecule 7 Chromosome OZ076735.1 <> na Primary Assembly 24356246 na SUPER_8 assembled-molecule 8 Chromosome OZ076736.1 <> na Primary Assembly 24105225 na SUPER_9 assembled-molecule 9 Chromosome OZ076737.1 <> na Primary Assembly 23352419 na SUPER_10 assembled-molecule 10 Chromosome OZ076738.1 <> na Primary Assembly 21351442 na SUPER_11 assembled-molecule 11 Chromosome OZ076739.1 <> na Primary Assembly 20604593 na SUPER_12 assembled-molecule 12 Chromosome OZ076740.1 <> na Primary Assembly 20274619 na SUPER_13 assembled-molecule 13 Chromosome OZ076741.1 <> na Primary Assembly 20221171 na SUPER_14 assembled-molecule 14 Chromosome OZ076742.1 <> na Primary Assembly 18910968 na SUPER_15 assembled-molecule 15 Chromosome OZ076743.1 <> na Primary Assembly 18910081 na SUPER_16 assembled-molecule 16 Chromosome OZ076744.1 <> na Primary Assembly 17465667 na SUPER_17 assembled-molecule 17 Chromosome OZ076745.1 <> na Primary Assembly 17428755 na SUPER_18 assembled-molecule 18 Chromosome OZ076746.1 <> na Primary Assembly 17211006 na SUPER_19 assembled-molecule 19 Chromosome OZ076747.1 <> na Primary Assembly 15819693 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CAXLOF010000001.1 <> na Primary Assembly 17595 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CAXLOF010000002.1 <> na Primary Assembly 23942 na HAP1_SCAFFOLD_154 unplaced-scaffold na na CAXLOF010000003.1 <> na Primary Assembly 2000 na HAP1_SCAFFOLD_69 unplaced-scaffold na na CAXLOF010000004.1 <> na Primary Assembly 43847 na HAP1_SCAFFOLD_139 unplaced-scaffold na na CAXLOF010000005.1 <> na Primary Assembly 22920 na HAP1_SCAFFOLD_42 unplaced-scaffold na na CAXLOF010000006.1 <> na Primary Assembly 69236 na HAP1_SCAFFOLD_112 unplaced-scaffold na na CAXLOF010000007.1 <> na Primary Assembly 28777 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CAXLOF010000008.1 <> na Primary Assembly 26005 na HAP1_SCAFFOLD_56 unplaced-scaffold na na CAXLOF010000009.1 <> na Primary Assembly 53145 na HAP1_SCAFFOLD_140 unplaced-scaffold na na CAXLOF010000010.1 <> na Primary Assembly 22168 na HAP1_SCAFFOLD_128 unplaced-scaffold na na CAXLOF010000011.1 <> na Primary Assembly 24688 na HAP1_SCAFFOLD_118 unplaced-scaffold na na CAXLOF010000012.1 <> na Primary Assembly 26955 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CAXLOF010000013.1 <> na Primary Assembly 34115 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CAXLOF010000014.1 <> na Primary Assembly 31948 na HAP1_SCAFFOLD_67 unplaced-scaffold na na CAXLOF010000015.1 <> na Primary Assembly 44268 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CAXLOF010000016.1 <> na Primary Assembly 51272 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CAXLOF010000017.1 <> na Primary Assembly 32911 na HAP1_SCAFFOLD_121 unplaced-scaffold na na CAXLOF010000018.1 <> na Primary Assembly 26181 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CAXLOF010000019.1 <> na Primary Assembly 36496 na HAP1_SCAFFOLD_144 unplaced-scaffold na na CAXLOF010000020.1 <> na Primary Assembly 18055 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CAXLOF010000021.1 <> na Primary Assembly 37260 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CAXLOF010000022.1 <> na Primary Assembly 39611 na HAP1_SCAFFOLD_156 unplaced-scaffold na na CAXLOF010000023.1 <> na Primary Assembly 2000 na HAP1_SCAFFOLD_111 unplaced-scaffold na na CAXLOF010000024.1 <> na Primary Assembly 29084 na HAP1_SCAFFOLD_66 unplaced-scaffold na na CAXLOF010000025.1 <> na Primary Assembly 45555 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CAXLOF010000026.1 <> na Primary Assembly 23726 na HAP1_SCAFFOLD_150 unplaced-scaffold na na CAXLOF010000027.1 <> na Primary Assembly 13918 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CAXLOF010000028.1 <> na Primary Assembly 23386 na HAP1_SCAFFOLD_117 unplaced-scaffold na na CAXLOF010000029.1 <> na Primary Assembly 27070 na HAP1_SCAFFOLD_143 unplaced-scaffold na na CAXLOF010000030.1 <> na Primary Assembly 19755 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CAXLOF010000031.1 <> na Primary Assembly 39556 na HAP1_SCAFFOLD_127 unplaced-scaffold na na CAXLOF010000032.1 <> na Primary Assembly 24854 na HAP1_SCAFFOLD_149 unplaced-scaffold na na CAXLOF010000033.1 <> na Primary Assembly 14478 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CAXLOF010000034.1 <> na Primary Assembly 30481 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CAXLOF010000035.1 <> na Primary Assembly 34817 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CAXLOF010000036.1 <> na Primary Assembly 24273 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CAXLOF010000037.1 <> na Primary Assembly 42615 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CAXLOF010000038.1 <> na Primary Assembly 33829 na HAP1_SCAFFOLD_155 unplaced-scaffold na na CAXLOF010000039.1 <> na Primary Assembly 2000 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CAXLOF010000040.1 <> na Primary Assembly 35760 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CAXLOF010000041.1 <> na Primary Assembly 38338 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CAXLOF010000042.1 <> na Primary Assembly 47735 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CAXLOF010000043.1 <> na Primary Assembly 33197 na HAP1_SCAFFOLD_62 unplaced-scaffold na na CAXLOF010000044.1 <> na Primary Assembly 47315 na HAP1_SCAFFOLD_159 unplaced-scaffold na na CAXLOF010000045.1 <> na Primary Assembly 1000 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CAXLOF010000046.1 <> na Primary Assembly 23829 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CAXLOF010000047.1 <> na Primary Assembly 34631 na HAP1_SCAFFOLD_39 unplaced-scaffold na na CAXLOF010000048.1 <> na Primary Assembly 75323 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CAXLOF010000049.1 <> na Primary Assembly 5000 na HAP1_SCAFFOLD_145 unplaced-scaffold na na CAXLOF010000050.1 <> na Primary Assembly 17860 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CAXLOF010000051.1 <> na Primary Assembly 33694 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CAXLOF010000052.1 <> na Primary Assembly 32255 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CAXLOF010000053.1 <> na Primary Assembly 29430 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CAXLOF010000054.1 <> na Primary Assembly 35820 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CAXLOF010000055.1 <> na Primary Assembly 29499 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CAXLOF010000056.1 <> na Primary Assembly 62114 na HAP1_SCAFFOLD_115 unplaced-scaffold na na CAXLOF010000057.1 <> na Primary Assembly 28026 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CAXLOF010000058.1 <> na Primary Assembly 51418 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CAXLOF010000059.1 <> na Primary Assembly 25513 na HAP1_SCAFFOLD_131 unplaced-scaffold na na CAXLOF010000060.1 <> na Primary Assembly 24111 na HAP1_SCAFFOLD_157 unplaced-scaffold na na CAXLOF010000061.1 <> na Primary Assembly 1788 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CAXLOF010000062.1 <> na Primary Assembly 53363 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CAXLOF010000063.1 <> na Primary Assembly 36493 na HAP1_SCAFFOLD_71 unplaced-scaffold na na CAXLOF010000064.1 <> na Primary Assembly 42524 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CAXLOF010000065.1 <> na Primary Assembly 40642 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CAXLOF010000066.1 <> na Primary Assembly 46633 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CAXLOF010000067.1 <> na Primary Assembly 34550 na HAP1_SCAFFOLD_138 unplaced-scaffold na na CAXLOF010000068.1 <> na Primary Assembly 23332 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CAXLOF010000069.1 <> na Primary Assembly 45747 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CAXLOF010000070.1 <> na Primary Assembly 24089 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CAXLOF010000071.1 <> na Primary Assembly 25909 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CAXLOF010000072.1 <> na Primary Assembly 26869 na HAP1_SCAFFOLD_54 unplaced-scaffold na na CAXLOF010000073.1 <> na Primary Assembly 53429 na HAP1_SCAFFOLD_160 unplaced-scaffold na na CAXLOF010000074.1 <> na Primary Assembly 1000 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CAXLOF010000075.1 <> na Primary Assembly 28536 na HAP1_SCAFFOLD_147 unplaced-scaffold na na CAXLOF010000076.1 <> na Primary Assembly 17403 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CAXLOF010000077.1 <> na Primary Assembly 24326 na HAP1_SCAFFOLD_76 unplaced-scaffold na na CAXLOF010000078.1 <> na Primary Assembly 39467 na HAP1_SCAFFOLD_158 unplaced-scaffold na na CAXLOF010000079.1 <> na Primary Assembly 1000 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CAXLOF010000080.1 <> na Primary Assembly 32418 na HAP1_SCAFFOLD_141 unplaced-scaffold na na CAXLOF010000081.1 <> na Primary Assembly 20734 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CAXLOF010000082.1 <> na Primary Assembly 29485 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CAXLOF010000083.1 <> na Primary Assembly 28332 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CAXLOF010000084.1 <> na Primary Assembly 36164 na HAP1_SCAFFOLD_124 unplaced-scaffold na na CAXLOF010000085.1 <> na Primary Assembly 25840 na HAP1_SCAFFOLD_152 unplaced-scaffold na na CAXLOF010000086.1 <> na Primary Assembly 9848 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CAXLOF010000087.1 <> na Primary Assembly 46856 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CAXLOF010000088.1 <> na Primary Assembly 33221 na HAP1_SCAFFOLD_88 unplaced-scaffold na na CAXLOF010000089.1 <> na Primary Assembly 35066 na HAP1_SCAFFOLD_80 unplaced-scaffold na na CAXLOF010000090.1 <> na Primary Assembly 37683 na HAP1_SCAFFOLD_148 unplaced-scaffold na na CAXLOF010000091.1 <> na Primary Assembly 16044 na HAP1_SCAFFOLD_120 unplaced-scaffold na na CAXLOF010000092.1 <> na Primary Assembly 26643 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CAXLOF010000093.1 <> na Primary Assembly 32863 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CAXLOF010000094.1 <> na Primary Assembly 38144 na HAP1_SCAFFOLD_142 unplaced-scaffold na na CAXLOF010000095.1 <> na Primary Assembly 20656 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CAXLOF010000096.1 <> na Primary Assembly 33249 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CAXLOF010000097.1 <> na Primary Assembly 25042 na HAP1_SCAFFOLD_53 unplaced-scaffold na na CAXLOF010000098.1 <> na Primary Assembly 59082 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CAXLOF010000099.1 <> na Primary Assembly 36095 na HAP1_SCAFFOLD_151 unplaced-scaffold na na CAXLOF010000100.1 <> na Primary Assembly 13558 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CAXLOF010000101.1 <> na Primary Assembly 27784 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CAXLOF010000102.1 <> na Primary Assembly 23335 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ076748.1 <> na non-nuclear 15141 na