# Assembly name: fGasAcu3.hap1.1 # Organism name: Gasterosteus aculeatus (three-spined stickleback) # Taxid: 69293 # BioSample: SAMEA11296546 # BioProject: PRJEB81174 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2024-10-28 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAXYFK01 # Assembly method: various # Genome coverage: 56x # Sequencing technology: PacBio,Arima2 # GenBank assembly accession: GCA_964276395.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964276394.1 Primary Assembly ## GCA_964276396.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_3 assembled-molecule 1 Chromosome OZ193835.1 <> na Primary Assembly 31593580 na SUPER_4 assembled-molecule 2 Chromosome OZ193836.1 <> na Primary Assembly 25427720 na SUPER_15 assembled-molecule 3 Chromosome OZ193849.1 <> na Primary Assembly 19284983 na SUPER_1 assembled-molecule 4 Chromosome OZ193833.1 <> na Primary Assembly 36158614 na SUPER_19 assembled-molecule 5 Chromosome OZ193853.1 <> na Primary Assembly 17636846 na SUPER_12 assembled-molecule 6 Chromosome OZ193846.1 <> na Primary Assembly 20687195 na SUPER_2 assembled-molecule 7 Chromosome OZ193834.1 <> na Primary Assembly 32236364 na SUPER_7 assembled-molecule 8 Chromosome OZ193839.1 <> na Primary Assembly 23405326 na SUPER_8 assembled-molecule 9 Chromosome OZ193840.1 <> na Primary Assembly 23153274 na SUPER_17 assembled-molecule 10 Chromosome OZ193851.1 <> na Primary Assembly 18696767 na SUPER_X assembled-molecule X Chromosome OZ193841.1 <> na Primary Assembly 22127121 na SUPER_16 assembled-molecule 11 Chromosome OZ193850.1 <> na Primary Assembly 18714591 na SUPER_5 assembled-molecule 12 Chromosome OZ193837.1 <> na Primary Assembly 25072291 na SUPER_6 assembled-molecule 13 Chromosome OZ193838.1 <> na Primary Assembly 23709975 na SUPER_18 assembled-molecule 14 Chromosome OZ193852.1 <> na Primary Assembly 17905413 na SUPER_14 assembled-molecule 15 Chromosome OZ193848.1 <> na Primary Assembly 19963347 na SUPER_13 assembled-molecule 16 Chromosome OZ193847.1 <> na Primary Assembly 20422882 na SUPER_10 assembled-molecule 17 Chromosome OZ193843.1 <> na Primary Assembly 21728453 na SUPER_20 assembled-molecule 18 Chromosome OZ193854.1 <> na Primary Assembly 16984749 na SUPER_9 assembled-molecule 20 Chromosome OZ193842.1 <> na Primary Assembly 21933526 na SUPER_11 assembled-molecule 21 Chromosome OZ193845.1 <> na Primary Assembly 21520949 na SUPER_Y assembled-molecule Y Chromosome OZ193844.1 <> na Primary Assembly 21630608 na HAP1_SCAFFOLD_22 unplaced-scaffold na na CAXYFK010000001.1 <> na Primary Assembly 2040332 na HAP1_SCAFFOLD_23 unplaced-scaffold na na CAXYFK010000002.1 <> na Primary Assembly 583650 na HAP1_SCAFFOLD_24 unplaced-scaffold na na CAXYFK010000003.1 <> na Primary Assembly 544000 na HAP1_SCAFFOLD_25 unplaced-scaffold na na CAXYFK010000004.1 <> na Primary Assembly 402940 na HAP1_SCAFFOLD_27 unplaced-scaffold na na CAXYFK010000005.1 <> na Primary Assembly 328352 na HAP1_SCAFFOLD_28 unplaced-scaffold na na CAXYFK010000006.1 <> na Primary Assembly 300229 na HAP1_SCAFFOLD_29 unplaced-scaffold na na CAXYFK010000007.1 <> na Primary Assembly 287195 na HAP1_SCAFFOLD_30 unplaced-scaffold na na CAXYFK010000008.1 <> na Primary Assembly 267976 na HAP1_SCAFFOLD_31 unplaced-scaffold na na CAXYFK010000009.1 <> na Primary Assembly 265806 na HAP1_SCAFFOLD_32 unplaced-scaffold na na CAXYFK010000010.1 <> na Primary Assembly 247649 na HAP1_SCAFFOLD_33 unplaced-scaffold na na CAXYFK010000011.1 <> na Primary Assembly 227410 na HAP1_SCAFFOLD_34 unplaced-scaffold na na CAXYFK010000012.1 <> na Primary Assembly 211000 na HAP1_SCAFFOLD_35 unplaced-scaffold na na CAXYFK010000013.1 <> na Primary Assembly 172203 na HAP1_SCAFFOLD_36 unplaced-scaffold na na CAXYFK010000014.1 <> na Primary Assembly 168022 na HAP1_SCAFFOLD_38 unplaced-scaffold na na CAXYFK010000015.1 <> na Primary Assembly 148437 na HAP1_SCAFFOLD_39 unplaced-scaffold na na CAXYFK010000016.1 <> na Primary Assembly 144096 na HAP1_SCAFFOLD_40 unplaced-scaffold na na CAXYFK010000017.1 <> na Primary Assembly 136498 na HAP1_SCAFFOLD_41 unplaced-scaffold na na CAXYFK010000018.1 <> na Primary Assembly 136000 na HAP1_SCAFFOLD_42 unplaced-scaffold na na CAXYFK010000019.1 <> na Primary Assembly 133311 na HAP1_SCAFFOLD_43 unplaced-scaffold na na CAXYFK010000020.1 <> na Primary Assembly 131790 na HAP1_SCAFFOLD_44 unplaced-scaffold na na CAXYFK010000021.1 <> na Primary Assembly 124881 na HAP1_SCAFFOLD_47 unplaced-scaffold na na CAXYFK010000022.1 <> na Primary Assembly 103749 na HAP1_SCAFFOLD_48 unplaced-scaffold na na CAXYFK010000023.1 <> na Primary Assembly 100303 na HAP1_SCAFFOLD_49 unplaced-scaffold na na CAXYFK010000024.1 <> na Primary Assembly 96891 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CAXYFK010000025.1 <> na Primary Assembly 93592 na HAP1_SCAFFOLD_51 unplaced-scaffold na na CAXYFK010000026.1 <> na Primary Assembly 93370 na HAP1_SCAFFOLD_52 unplaced-scaffold na na CAXYFK010000027.1 <> na Primary Assembly 93346 na HAP1_SCAFFOLD_53 unplaced-scaffold na na CAXYFK010000028.1 <> na Primary Assembly 89020 na HAP1_SCAFFOLD_54 unplaced-scaffold na na CAXYFK010000029.1 <> na Primary Assembly 88440 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CAXYFK010000030.1 <> na Primary Assembly 85856 na HAP1_SCAFFOLD_56 unplaced-scaffold na na CAXYFK010000031.1 <> na Primary Assembly 84675 na HAP1_SCAFFOLD_57 unplaced-scaffold na na CAXYFK010000032.1 <> na Primary Assembly 84036 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CAXYFK010000033.1 <> na Primary Assembly 81132 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CAXYFK010000034.1 <> na Primary Assembly 77799 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CAXYFK010000035.1 <> na Primary Assembly 77580 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CAXYFK010000036.1 <> na Primary Assembly 74369 na HAP1_SCAFFOLD_62 unplaced-scaffold na na CAXYFK010000037.1 <> na Primary Assembly 71947 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CAXYFK010000038.1 <> na Primary Assembly 70022 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CAXYFK010000039.1 <> na Primary Assembly 66000 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CAXYFK010000040.1 <> na Primary Assembly 65806 na HAP1_SCAFFOLD_66 unplaced-scaffold na na CAXYFK010000041.1 <> na Primary Assembly 64552 na HAP1_SCAFFOLD_67 unplaced-scaffold na na CAXYFK010000042.1 <> na Primary Assembly 63000 na HAP1_SCAFFOLD_68 unplaced-scaffold na na CAXYFK010000043.1 <> na Primary Assembly 62726 na HAP1_SCAFFOLD_69 unplaced-scaffold na na CAXYFK010000044.1 <> na Primary Assembly 62377 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CAXYFK010000045.1 <> na Primary Assembly 61818 na HAP1_SCAFFOLD_71 unplaced-scaffold na na CAXYFK010000046.1 <> na Primary Assembly 60863 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CAXYFK010000047.1 <> na Primary Assembly 60651 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CAXYFK010000048.1 <> na Primary Assembly 59914 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CAXYFK010000049.1 <> na Primary Assembly 59775 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CAXYFK010000050.1 <> na Primary Assembly 59054 na HAP1_SCAFFOLD_76 unplaced-scaffold na na CAXYFK010000051.1 <> na Primary Assembly 58375 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CAXYFK010000052.1 <> na Primary Assembly 58255 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CAXYFK010000053.1 <> na Primary Assembly 58075 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CAXYFK010000054.1 <> na Primary Assembly 57787 na HAP1_SCAFFOLD_80 unplaced-scaffold na na CAXYFK010000055.1 <> na Primary Assembly 57000 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CAXYFK010000056.1 <> na Primary Assembly 55409 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CAXYFK010000057.1 <> na Primary Assembly 54394 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CAXYFK010000058.1 <> na Primary Assembly 53053 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CAXYFK010000059.1 <> na Primary Assembly 53000 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CAXYFK010000060.1 <> na Primary Assembly 52895 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CAXYFK010000061.1 <> na Primary Assembly 52599 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CAXYFK010000062.1 <> na Primary Assembly 52507 na HAP1_SCAFFOLD_88 unplaced-scaffold na na CAXYFK010000063.1 <> na Primary Assembly 51953 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CAXYFK010000064.1 <> na Primary Assembly 50830 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CAXYFK010000065.1 <> na Primary Assembly 48805 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CAXYFK010000066.1 <> na Primary Assembly 46309 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CAXYFK010000067.1 <> na Primary Assembly 44086 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CAXYFK010000068.1 <> na Primary Assembly 42246 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CAXYFK010000069.1 <> na Primary Assembly 41723 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CAXYFK010000070.1 <> na Primary Assembly 40482 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CAXYFK010000071.1 <> na Primary Assembly 39449 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CAXYFK010000072.1 <> na Primary Assembly 39285 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CAXYFK010000073.1 <> na Primary Assembly 39083 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CAXYFK010000074.1 <> na Primary Assembly 38120 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CAXYFK010000075.1 <> na Primary Assembly 37697 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CAXYFK010000076.1 <> na Primary Assembly 33894 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CAXYFK010000077.1 <> na Primary Assembly 32964 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CAXYFK010000078.1 <> na Primary Assembly 32885 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CAXYFK010000079.1 <> na Primary Assembly 32355 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CAXYFK010000080.1 <> na Primary Assembly 29657 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CAXYFK010000081.1 <> na Primary Assembly 29572 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CAXYFK010000082.1 <> na Primary Assembly 28992 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CAXYFK010000083.1 <> na Primary Assembly 28335 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CAXYFK010000084.1 <> na Primary Assembly 27294 na HAP1_SCAFFOLD_111 unplaced-scaffold na na CAXYFK010000085.1 <> na Primary Assembly 26793 na HAP1_SCAFFOLD_112 unplaced-scaffold na na CAXYFK010000086.1 <> na Primary Assembly 26184 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CAXYFK010000087.1 <> na Primary Assembly 25006 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CAXYFK010000088.1 <> na Primary Assembly 24791 na HAP1_SCAFFOLD_115 unplaced-scaffold na na CAXYFK010000089.1 <> na Primary Assembly 24729 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CAXYFK010000090.1 <> na Primary Assembly 24300 na HAP1_SCAFFOLD_117 unplaced-scaffold na na CAXYFK010000091.1 <> na Primary Assembly 24293 na HAP1_SCAFFOLD_118 unplaced-scaffold na na CAXYFK010000092.1 <> na Primary Assembly 23892 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CAXYFK010000093.1 <> na Primary Assembly 23448 na HAP1_SCAFFOLD_120 unplaced-scaffold na na CAXYFK010000094.1 <> na Primary Assembly 22412 na HAP1_SCAFFOLD_121 unplaced-scaffold na na CAXYFK010000095.1 <> na Primary Assembly 21582 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CAXYFK010000096.1 <> na Primary Assembly 21000 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CAXYFK010000097.1 <> na Primary Assembly 19347 na HAP1_SCAFFOLD_124 unplaced-scaffold na na CAXYFK010000098.1 <> na Primary Assembly 18755 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CAXYFK010000099.1 <> na Primary Assembly 18721 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CAXYFK010000100.1 <> na Primary Assembly 17437 na HAP1_SCAFFOLD_127 unplaced-scaffold na na CAXYFK010000101.1 <> na Primary Assembly 17419 na HAP1_SCAFFOLD_128 unplaced-scaffold na na CAXYFK010000102.1 <> na Primary Assembly 15958 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CAXYFK010000103.1 <> na Primary Assembly 14959 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CAXYFK010000104.1 <> na Primary Assembly 14322 na HAP1_SCAFFOLD_131 unplaced-scaffold na na CAXYFK010000105.1 <> na Primary Assembly 2000 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CAXYFK010000106.1 <> na Primary Assembly 2000 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CAXYFK010000107.1 <> na Primary Assembly 1000 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ193855.1 <> na non-nuclear 16560 na