# Assembly name: idAnoCruz5.1 # Organism name: Anopheles cruzii (mosquitos) # Taxid: 68878 # BioSample: SAMEA115165528 # BioProject: PRJEB83064 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2024-12-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAYQGV01 # Assembly method: various # Genome coverage: 33x # Sequencing technology: PacBio,Arima2 # GenBank assembly accession: GCA_964417045.1 # Linked assembly: GCA_964417205.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964417044.1 Primary Assembly ## GCA_964417046.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name X assembled-molecule X Chromosome OZ207243.1 <> na Primary Assembly 12170709 na 2RL assembled-molecule 2RL Chromosome OZ207242.1 <> na Primary Assembly 64130252 na 3RL assembled-molecule 3RL Chromosome OZ207241.1 <> na Primary Assembly 92422177 na HAP1_SCAFFOLD_5 unplaced-scaffold na na CAYQGV010000001.1 <> na Primary Assembly 380000 na HAP1_SCAFFOLD_6 unplaced-scaffold na na CAYQGV010000002.1 <> na Primary Assembly 270096 na HAP1_SCAFFOLD_9 unplaced-scaffold na na CAYQGV010000003.1 <> na Primary Assembly 185005 na HAP1_SCAFFOLD_11 unplaced-scaffold na na CAYQGV010000004.1 <> na Primary Assembly 176428 na HAP1_SCAFFOLD_12 unplaced-scaffold na na CAYQGV010000005.1 <> na Primary Assembly 173111 na HAP1_SCAFFOLD_13 unplaced-scaffold na na CAYQGV010000006.1 <> na Primary Assembly 161688 na HAP1_SCAFFOLD_14 unplaced-scaffold na na CAYQGV010000007.1 <> na Primary Assembly 157271 na HAP1_SCAFFOLD_15 unplaced-scaffold na na CAYQGV010000008.1 <> na Primary Assembly 148463 na HAP1_SCAFFOLD_16 unplaced-scaffold na na CAYQGV010000009.1 <> na Primary Assembly 144011 na HAP1_SCAFFOLD_17 unplaced-scaffold na na CAYQGV010000010.1 <> na Primary Assembly 123689 na HAP1_SCAFFOLD_18 unplaced-scaffold na na CAYQGV010000011.1 <> na Primary Assembly 122811 na HAP1_SCAFFOLD_19 unplaced-scaffold na na CAYQGV010000012.1 <> na Primary Assembly 115753 na HAP1_SCAFFOLD_21 unplaced-scaffold na na CAYQGV010000013.1 <> na Primary Assembly 109576 na HAP1_SCAFFOLD_22 unplaced-scaffold na na CAYQGV010000014.1 <> na Primary Assembly 107238 na HAP1_SCAFFOLD_23 unplaced-scaffold na na CAYQGV010000015.1 <> na Primary Assembly 100080 na HAP1_SCAFFOLD_24 unplaced-scaffold na na CAYQGV010000016.1 <> na Primary Assembly 96143 na HAP1_SCAFFOLD_25 unplaced-scaffold na na CAYQGV010000017.1 <> na Primary Assembly 95454 na HAP1_SCAFFOLD_26 unplaced-scaffold na na CAYQGV010000018.1 <> na Primary Assembly 93922 na HAP1_SCAFFOLD_27 unplaced-scaffold na na CAYQGV010000019.1 <> na Primary Assembly 86442 na HAP1_SCAFFOLD_28 unplaced-scaffold na na CAYQGV010000020.1 <> na Primary Assembly 85727 na HAP1_SCAFFOLD_29 unplaced-scaffold na na CAYQGV010000021.1 <> na Primary Assembly 85474 na HAP1_SCAFFOLD_30 unplaced-scaffold na na CAYQGV010000022.1 <> na Primary Assembly 84410 na HAP1_SCAFFOLD_31 unplaced-scaffold na na CAYQGV010000023.1 <> na Primary Assembly 83365 na HAP1_SCAFFOLD_32 unplaced-scaffold na na CAYQGV010000024.1 <> na Primary Assembly 83329 na HAP1_SCAFFOLD_34 unplaced-scaffold na na CAYQGV010000025.1 <> na Primary Assembly 78242 na HAP1_SCAFFOLD_35 unplaced-scaffold na na CAYQGV010000026.1 <> na Primary Assembly 74541 na HAP1_SCAFFOLD_36 unplaced-scaffold na na CAYQGV010000027.1 <> na Primary Assembly 71462 na HAP1_SCAFFOLD_38 unplaced-scaffold na na CAYQGV010000028.1 <> na Primary Assembly 68276 na HAP1_SCAFFOLD_40 unplaced-scaffold na na CAYQGV010000029.1 <> na Primary Assembly 65149 na HAP1_SCAFFOLD_41 unplaced-scaffold na na CAYQGV010000030.1 <> na Primary Assembly 64393 na HAP1_SCAFFOLD_42 unplaced-scaffold na na CAYQGV010000031.1 <> na Primary Assembly 64223 na HAP1_SCAFFOLD_43 unplaced-scaffold na na CAYQGV010000032.1 <> na Primary Assembly 63940 na HAP1_SCAFFOLD_44 unplaced-scaffold na na CAYQGV010000033.1 <> na Primary Assembly 62483 na HAP1_SCAFFOLD_45 unplaced-scaffold na na CAYQGV010000034.1 <> na Primary Assembly 62391 na HAP1_SCAFFOLD_46 unplaced-scaffold na na CAYQGV010000035.1 <> na Primary Assembly 58573 na HAP1_SCAFFOLD_47 unplaced-scaffold na na CAYQGV010000036.1 <> na Primary Assembly 56804 na HAP1_SCAFFOLD_48 unplaced-scaffold na na CAYQGV010000037.1 <> na Primary Assembly 55008 na HAP1_SCAFFOLD_49 unplaced-scaffold na na CAYQGV010000038.1 <> na Primary Assembly 54326 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CAYQGV010000039.1 <> na Primary Assembly 53959 na HAP1_SCAFFOLD_51 unplaced-scaffold na na CAYQGV010000040.1 <> na Primary Assembly 53826 na HAP1_SCAFFOLD_52 unplaced-scaffold na na CAYQGV010000041.1 <> na Primary Assembly 52426 na HAP1_SCAFFOLD_53 unplaced-scaffold na na CAYQGV010000042.1 <> na Primary Assembly 51948 na HAP1_SCAFFOLD_54 unplaced-scaffold na na CAYQGV010000043.1 <> na Primary Assembly 51721 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CAYQGV010000044.1 <> na Primary Assembly 51551 na HAP1_SCAFFOLD_57 unplaced-scaffold na na CAYQGV010000045.1 <> na Primary Assembly 50578 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CAYQGV010000046.1 <> na Primary Assembly 49259 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CAYQGV010000047.1 <> na Primary Assembly 49147 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CAYQGV010000048.1 <> na Primary Assembly 47861 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CAYQGV010000049.1 <> na Primary Assembly 47683 na HAP1_SCAFFOLD_62 unplaced-scaffold na na CAYQGV010000050.1 <> na Primary Assembly 46355 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CAYQGV010000051.1 <> na Primary Assembly 45587 na HAP1_SCAFFOLD_66 unplaced-scaffold na na CAYQGV010000052.1 <> na Primary Assembly 45110 na HAP1_SCAFFOLD_67 unplaced-scaffold na na CAYQGV010000053.1 <> na Primary Assembly 45034 na HAP1_SCAFFOLD_68 unplaced-scaffold na na CAYQGV010000054.1 <> na Primary Assembly 45001 na HAP1_SCAFFOLD_69 unplaced-scaffold na na CAYQGV010000055.1 <> na Primary Assembly 44763 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CAYQGV010000056.1 <> na Primary Assembly 44387 na HAP1_SCAFFOLD_71 unplaced-scaffold na na CAYQGV010000057.1 <> na Primary Assembly 43452 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CAYQGV010000058.1 <> na Primary Assembly 43389 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CAYQGV010000059.1 <> na Primary Assembly 43255 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CAYQGV010000060.1 <> na Primary Assembly 42633 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CAYQGV010000061.1 <> na Primary Assembly 42504 na HAP1_SCAFFOLD_76 unplaced-scaffold na na CAYQGV010000062.1 <> na Primary Assembly 42456 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CAYQGV010000063.1 <> na Primary Assembly 41647 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CAYQGV010000064.1 <> na Primary Assembly 41337 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CAYQGV010000065.1 <> na Primary Assembly 40660 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CAYQGV010000066.1 <> na Primary Assembly 39556 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CAYQGV010000067.1 <> na Primary Assembly 38737 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CAYQGV010000068.1 <> na Primary Assembly 38227 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CAYQGV010000069.1 <> na Primary Assembly 37942 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CAYQGV010000070.1 <> na Primary Assembly 37891 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CAYQGV010000071.1 <> na Primary Assembly 37261 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CAYQGV010000072.1 <> na Primary Assembly 37154 na HAP1_SCAFFOLD_88 unplaced-scaffold na na CAYQGV010000073.1 <> na Primary Assembly 35343 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CAYQGV010000074.1 <> na Primary Assembly 34576 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CAYQGV010000075.1 <> na Primary Assembly 34168 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CAYQGV010000076.1 <> na Primary Assembly 34090 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CAYQGV010000077.1 <> na Primary Assembly 33961 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CAYQGV010000078.1 <> na Primary Assembly 33829 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CAYQGV010000079.1 <> na Primary Assembly 33818 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CAYQGV010000080.1 <> na Primary Assembly 33724 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CAYQGV010000081.1 <> na Primary Assembly 33697 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CAYQGV010000082.1 <> na Primary Assembly 33368 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CAYQGV010000083.1 <> na Primary Assembly 32931 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CAYQGV010000084.1 <> na Primary Assembly 31657 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CAYQGV010000085.1 <> na Primary Assembly 30940 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CAYQGV010000086.1 <> na Primary Assembly 30180 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CAYQGV010000087.1 <> na Primary Assembly 29817 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CAYQGV010000088.1 <> na Primary Assembly 29746 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CAYQGV010000089.1 <> na Primary Assembly 29419 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CAYQGV010000090.1 <> na Primary Assembly 29325 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CAYQGV010000091.1 <> na Primary Assembly 28638 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CAYQGV010000092.1 <> na Primary Assembly 28508 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CAYQGV010000093.1 <> na Primary Assembly 28432 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CAYQGV010000094.1 <> na Primary Assembly 28426 na HAP1_SCAFFOLD_111 unplaced-scaffold na na CAYQGV010000095.1 <> na Primary Assembly 28221 na HAP1_SCAFFOLD_112 unplaced-scaffold na na CAYQGV010000096.1 <> na Primary Assembly 27606 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CAYQGV010000097.1 <> na Primary Assembly 26636 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CAYQGV010000098.1 <> na Primary Assembly 26626 na HAP1_SCAFFOLD_115 unplaced-scaffold na na CAYQGV010000099.1 <> na Primary Assembly 26266 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CAYQGV010000100.1 <> na Primary Assembly 25590 na HAP1_SCAFFOLD_117 unplaced-scaffold na na CAYQGV010000101.1 <> na Primary Assembly 25579 na HAP1_SCAFFOLD_118 unplaced-scaffold na na CAYQGV010000102.1 <> na Primary Assembly 25441 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CAYQGV010000103.1 <> na Primary Assembly 25421 na HAP1_SCAFFOLD_120 unplaced-scaffold na na CAYQGV010000104.1 <> na Primary Assembly 25395 na HAP1_SCAFFOLD_121 unplaced-scaffold na na CAYQGV010000105.1 <> na Primary Assembly 25358 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CAYQGV010000106.1 <> na Primary Assembly 24832 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CAYQGV010000107.1 <> na Primary Assembly 24560 na HAP1_SCAFFOLD_124 unplaced-scaffold na na CAYQGV010000108.1 <> na Primary Assembly 24406 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CAYQGV010000109.1 <> na Primary Assembly 24336 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CAYQGV010000110.1 <> na Primary Assembly 24030 na HAP1_SCAFFOLD_127 unplaced-scaffold na na CAYQGV010000111.1 <> na Primary Assembly 23873 na HAP1_SCAFFOLD_128 unplaced-scaffold na na CAYQGV010000112.1 <> na Primary Assembly 23846 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CAYQGV010000113.1 <> na Primary Assembly 23783 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CAYQGV010000114.1 <> na Primary Assembly 22931 na HAP1_SCAFFOLD_131 unplaced-scaffold na na CAYQGV010000115.1 <> na Primary Assembly 22850 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CAYQGV010000116.1 <> na Primary Assembly 22732 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CAYQGV010000117.1 <> na Primary Assembly 22275 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CAYQGV010000118.1 <> na Primary Assembly 22191 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CAYQGV010000119.1 <> na Primary Assembly 21870 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CAYQGV010000120.1 <> na Primary Assembly 21084 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CAYQGV010000121.1 <> na Primary Assembly 21056 na HAP1_SCAFFOLD_138 unplaced-scaffold na na CAYQGV010000122.1 <> na Primary Assembly 20963 na HAP1_SCAFFOLD_139 unplaced-scaffold na na CAYQGV010000123.1 <> na Primary Assembly 20538 na HAP1_SCAFFOLD_140 unplaced-scaffold na na CAYQGV010000124.1 <> na Primary Assembly 20345 na HAP1_SCAFFOLD_141 unplaced-scaffold na na CAYQGV010000125.1 <> na Primary Assembly 20291 na HAP1_SCAFFOLD_142 unplaced-scaffold na na CAYQGV010000126.1 <> na Primary Assembly 20031 na HAP1_SCAFFOLD_143 unplaced-scaffold na na CAYQGV010000127.1 <> na Primary Assembly 19140 na HAP1_SCAFFOLD_144 unplaced-scaffold na na CAYQGV010000128.1 <> na Primary Assembly 18906 na HAP1_SCAFFOLD_145 unplaced-scaffold na na CAYQGV010000129.1 <> na Primary Assembly 18427 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CAYQGV010000130.1 <> na Primary Assembly 18422 na HAP1_SCAFFOLD_147 unplaced-scaffold na na CAYQGV010000131.1 <> na Primary Assembly 18023 na HAP1_SCAFFOLD_148 unplaced-scaffold na na CAYQGV010000132.1 <> na Primary Assembly 17938 na HAP1_SCAFFOLD_149 unplaced-scaffold na na CAYQGV010000133.1 <> na Primary Assembly 17932 na HAP1_SCAFFOLD_150 unplaced-scaffold na na CAYQGV010000134.1 <> na Primary Assembly 17885 na HAP1_SCAFFOLD_151 unplaced-scaffold na na CAYQGV010000135.1 <> na Primary Assembly 17847 na HAP1_SCAFFOLD_152 unplaced-scaffold na na CAYQGV010000136.1 <> na Primary Assembly 17508 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CAYQGV010000137.1 <> na Primary Assembly 17303 na HAP1_SCAFFOLD_154 unplaced-scaffold na na CAYQGV010000138.1 <> na Primary Assembly 17092 na HAP1_SCAFFOLD_155 unplaced-scaffold na na CAYQGV010000139.1 <> na Primary Assembly 17048 na HAP1_SCAFFOLD_156 unplaced-scaffold na na CAYQGV010000140.1 <> na Primary Assembly 16809 na HAP1_SCAFFOLD_157 unplaced-scaffold na na CAYQGV010000141.1 <> na Primary Assembly 16778 na HAP1_SCAFFOLD_158 unplaced-scaffold na na CAYQGV010000142.1 <> na Primary Assembly 16631 na HAP1_SCAFFOLD_159 unplaced-scaffold na na CAYQGV010000143.1 <> na Primary Assembly 16168 na HAP1_SCAFFOLD_160 unplaced-scaffold na na CAYQGV010000144.1 <> na Primary Assembly 16069 na HAP1_SCAFFOLD_161 unplaced-scaffold na na CAYQGV010000145.1 <> na Primary Assembly 15637 na HAP1_SCAFFOLD_162 unplaced-scaffold na na CAYQGV010000146.1 <> na Primary Assembly 15336 na HAP1_SCAFFOLD_163 unplaced-scaffold na na CAYQGV010000147.1 <> na Primary Assembly 15113 na HAP1_SCAFFOLD_164 unplaced-scaffold na na CAYQGV010000148.1 <> na Primary Assembly 15109 na HAP1_SCAFFOLD_165 unplaced-scaffold na na CAYQGV010000149.1 <> na Primary Assembly 14876 na HAP1_SCAFFOLD_166 unplaced-scaffold na na CAYQGV010000150.1 <> na Primary Assembly 14842 na HAP1_SCAFFOLD_167 unplaced-scaffold na na CAYQGV010000151.1 <> na Primary Assembly 14664 na HAP1_SCAFFOLD_168 unplaced-scaffold na na CAYQGV010000152.1 <> na Primary Assembly 13719 na HAP1_SCAFFOLD_169 unplaced-scaffold na na CAYQGV010000153.1 <> na Primary Assembly 13412 na HAP1_SCAFFOLD_170 unplaced-scaffold na na CAYQGV010000154.1 <> na Primary Assembly 13321 na HAP1_SCAFFOLD_171 unplaced-scaffold na na CAYQGV010000155.1 <> na Primary Assembly 12747 na HAP1_SCAFFOLD_172 unplaced-scaffold na na CAYQGV010000156.1 <> na Primary Assembly 12613 na HAP1_SCAFFOLD_173 unplaced-scaffold na na CAYQGV010000157.1 <> na Primary Assembly 12578 na HAP1_SCAFFOLD_174 unplaced-scaffold na na CAYQGV010000158.1 <> na Primary Assembly 11841 na HAP1_SCAFFOLD_175 unplaced-scaffold na na CAYQGV010000159.1 <> na Primary Assembly 11192 na HAP1_SCAFFOLD_176 unplaced-scaffold na na CAYQGV010000160.1 <> na Primary Assembly 8796 na HAP1_SCAFFOLD_177 unplaced-scaffold na na CAYQGV010000161.1 <> na Primary Assembly 8037 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ207244.1 <> na non-nuclear 15772 na