# Assembly name: fAthPre1.1 # Organism name: Atherina presbyter (sand smelt) # Taxid: 303921 # BioSample: SAMEA118206857 # BioProject: PRJEB88941 # Submitter: Genoscope # Date: 2025-06-07 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CBDKDQ01 # Assembly method: Hifiasm,Purge_dups,Yahs # Genome coverage: 80x # Sequencing technology: PacBio,Arima # RefSeq category: Reference Genome # GenBank assembly accession: GCA_965295175.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_965295174.1 Primary Assembly ## GCA_965295176.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ261529.1 <> na Primary Assembly 55116495 na SUPER_2 assembled-molecule 2 Chromosome OZ261530.1 <> na Primary Assembly 54065165 na SUPER_3 assembled-molecule 3 Chromosome OZ261531.1 <> na Primary Assembly 50315724 na SUPER_4 assembled-molecule 4 Chromosome OZ261532.1 <> na Primary Assembly 49677364 na SUPER_5 assembled-molecule 5 Chromosome OZ261533.1 <> na Primary Assembly 49490314 na SUPER_6 assembled-molecule 6 Chromosome OZ261534.1 <> na Primary Assembly 48088217 na SUPER_7 assembled-molecule 7 Chromosome OZ261535.1 <> na Primary Assembly 47805673 na SUPER_8 assembled-molecule 8 Chromosome OZ261536.1 <> na Primary Assembly 47334308 na SUPER_9 assembled-molecule 9 Chromosome OZ261537.1 <> na Primary Assembly 45796685 na SUPER_10 assembled-molecule 10 Chromosome OZ261538.1 <> na Primary Assembly 44921393 na SUPER_11 assembled-molecule 11 Chromosome OZ261539.1 <> na Primary Assembly 43223242 na SUPER_12 assembled-molecule 12 Chromosome OZ261540.1 <> na Primary Assembly 43195910 na SUPER_13 assembled-molecule 13 Chromosome OZ261541.1 <> na Primary Assembly 42840864 na SUPER_14 assembled-molecule 14 Chromosome OZ261542.1 <> na Primary Assembly 41359032 na SUPER_15 assembled-molecule 15 Chromosome OZ261543.1 <> na Primary Assembly 40076495 na SUPER_16 assembled-molecule 16 Chromosome OZ261544.1 <> na Primary Assembly 39599978 na SUPER_17 assembled-molecule 17 Chromosome OZ261545.1 <> na Primary Assembly 37674371 na SUPER_18 assembled-molecule 18 Chromosome OZ261546.1 <> na Primary Assembly 37513778 na SUPER_19 assembled-molecule 19 Chromosome OZ261547.1 <> na Primary Assembly 37070096 na SUPER_20 assembled-molecule 20 Chromosome OZ261548.1 <> na Primary Assembly 36930509 na SUPER_21 assembled-molecule 21 Chromosome OZ261549.1 <> na Primary Assembly 36056235 na SUPER_22 assembled-molecule 22 Chromosome OZ261550.1 <> na Primary Assembly 35947707 na SUPER_23 assembled-molecule 23 Chromosome OZ261551.1 <> na Primary Assembly 30412398 na SUPER_24 assembled-molecule 24 Chromosome OZ261552.1 <> na Primary Assembly 26680188 na SUPER_7_unloc_1 unlocalized-scaffold 7 Chromosome CBDKDQ010000001.1 <> na Primary Assembly 343631 na SUPER_7_unloc_2 unlocalized-scaffold 7 Chromosome CBDKDQ010000002.1 <> na Primary Assembly 232000 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome CBDKDQ010000003.1 <> na Primary Assembly 240374 na SUPER_23_unloc_1 unlocalized-scaffold 23 Chromosome CBDKDQ010000004.1 <> na Primary Assembly 158000 na scaffold_25 unplaced-scaffold na na CBDKDQ010000005.1 <> na Primary Assembly 2475645 na scaffold_29 unplaced-scaffold na na CBDKDQ010000006.1 <> na Primary Assembly 1518100 na scaffold_31 unplaced-scaffold na na CBDKDQ010000007.1 <> na Primary Assembly 1014936 na scaffold_27 unplaced-scaffold na na CBDKDQ010000008.1 <> na Primary Assembly 944000 na scaffold_32 unplaced-scaffold na na CBDKDQ010000009.1 <> na Primary Assembly 877163 na scaffold_33 unplaced-scaffold na na CBDKDQ010000010.1 <> na Primary Assembly 816100 na scaffold_35 unplaced-scaffold na na CBDKDQ010000011.1 <> na Primary Assembly 742000 na scaffold_36 unplaced-scaffold na na CBDKDQ010000012.1 <> na Primary Assembly 641654 na scaffold_38 unplaced-scaffold na na CBDKDQ010000013.1 <> na Primary Assembly 601009 na scaffold_41 unplaced-scaffold na na CBDKDQ010000014.1 <> na Primary Assembly 506373 na scaffold_42 unplaced-scaffold na na CBDKDQ010000015.1 <> na Primary Assembly 469000 na scaffold_43 unplaced-scaffold na na CBDKDQ010000016.1 <> na Primary Assembly 395437 na scaffold_44 unplaced-scaffold na na CBDKDQ010000017.1 <> na Primary Assembly 379540 na scaffold_45 unplaced-scaffold na na CBDKDQ010000018.1 <> na Primary Assembly 378690 na scaffold_46 unplaced-scaffold na na CBDKDQ010000019.1 <> na Primary Assembly 352231 na scaffold_47 unplaced-scaffold na na CBDKDQ010000020.1 <> na Primary Assembly 350701 na scaffold_49 unplaced-scaffold na na CBDKDQ010000021.1 <> na Primary Assembly 323000 na scaffold_50 unplaced-scaffold na na CBDKDQ010000022.1 <> na Primary Assembly 319416 na scaffold_52 unplaced-scaffold na na CBDKDQ010000023.1 <> na Primary Assembly 290000 na scaffold_53 unplaced-scaffold na na CBDKDQ010000024.1 <> na Primary Assembly 275225 na scaffold_54 unplaced-scaffold na na CBDKDQ010000025.1 <> na Primary Assembly 252505 na scaffold_69 unplaced-scaffold na na CBDKDQ010000026.1 <> na Primary Assembly 181000 na scaffold_71 unplaced-scaffold na na CBDKDQ010000027.1 <> na Primary Assembly 174737 na scaffold_83 unplaced-scaffold na na CBDKDQ010000028.1 <> na Primary Assembly 149471 na scaffold_86 unplaced-scaffold na na CBDKDQ010000029.1 <> na Primary Assembly 147000 na scaffold_87 unplaced-scaffold na na CBDKDQ010000030.1 <> na Primary Assembly 143386 na scaffold_91 unplaced-scaffold na na CBDKDQ010000031.1 <> na Primary Assembly 141186 na scaffold_94 unplaced-scaffold na na CBDKDQ010000032.1 <> na Primary Assembly 134000 na scaffold_95 unplaced-scaffold na na CBDKDQ010000033.1 <> na Primary Assembly 134000 na scaffold_97 unplaced-scaffold na na CBDKDQ010000034.1 <> na Primary Assembly 126928 na scaffold_98 unplaced-scaffold na na CBDKDQ010000035.1 <> na Primary Assembly 125729 na scaffold_102 unplaced-scaffold na na CBDKDQ010000036.1 <> na Primary Assembly 122000 na scaffold_104 unplaced-scaffold na na CBDKDQ010000037.1 <> na Primary Assembly 121000 na scaffold_106 unplaced-scaffold na na CBDKDQ010000038.1 <> na Primary Assembly 120000 na scaffold_108 unplaced-scaffold na na CBDKDQ010000039.1 <> na Primary Assembly 117000 na scaffold_110 unplaced-scaffold na na CBDKDQ010000040.1 <> na Primary Assembly 114000 na scaffold_113 unplaced-scaffold na na CBDKDQ010000041.1 <> na Primary Assembly 109000 na scaffold_116 unplaced-scaffold na na CBDKDQ010000042.1 <> na Primary Assembly 106000 na scaffold_121 unplaced-scaffold na na CBDKDQ010000043.1 <> na Primary Assembly 94789 na scaffold_126 unplaced-scaffold na na CBDKDQ010000044.1 <> na Primary Assembly 91000 na scaffold_128 unplaced-scaffold na na CBDKDQ010000045.1 <> na Primary Assembly 88656 na scaffold_136 unplaced-scaffold na na CBDKDQ010000046.1 <> na Primary Assembly 84000 na scaffold_144 unplaced-scaffold na na CBDKDQ010000047.1 <> na Primary Assembly 79000 na scaffold_147 unplaced-scaffold na na CBDKDQ010000048.1 <> na Primary Assembly 76000 na scaffold_148 unplaced-scaffold na na CBDKDQ010000049.1 <> na Primary Assembly 74542 na scaffold_151 unplaced-scaffold na na CBDKDQ010000050.1 <> na Primary Assembly 72000 na scaffold_152 unplaced-scaffold na na CBDKDQ010000051.1 <> na Primary Assembly 71486 na scaffold_168 unplaced-scaffold na na CBDKDQ010000052.1 <> na Primary Assembly 61018 na scaffold_169 unplaced-scaffold na na CBDKDQ010000053.1 <> na Primary Assembly 60000 na scaffold_170 unplaced-scaffold na na CBDKDQ010000054.1 <> na Primary Assembly 59576 na scaffold_175 unplaced-scaffold na na CBDKDQ010000055.1 <> na Primary Assembly 58000 na scaffold_178 unplaced-scaffold na na CBDKDQ010000056.1 <> na Primary Assembly 57000 na scaffold_179 unplaced-scaffold na na CBDKDQ010000057.1 <> na Primary Assembly 56404 na scaffold_180 unplaced-scaffold na na CBDKDQ010000058.1 <> na Primary Assembly 54000 na scaffold_183 unplaced-scaffold na na CBDKDQ010000059.1 <> na Primary Assembly 53000 na scaffold_184 unplaced-scaffold na na CBDKDQ010000060.1 <> na Primary Assembly 53000 na scaffold_187 unplaced-scaffold na na CBDKDQ010000061.1 <> na Primary Assembly 52110 na scaffold_189 unplaced-scaffold na na CBDKDQ010000062.1 <> na Primary Assembly 51701 na scaffold_191 unplaced-scaffold na na CBDKDQ010000063.1 <> na Primary Assembly 51000 na scaffold_200 unplaced-scaffold na na CBDKDQ010000064.1 <> na Primary Assembly 45678 na scaffold_203 unplaced-scaffold na na CBDKDQ010000065.1 <> na Primary Assembly 44622 na scaffold_208 unplaced-scaffold na na CBDKDQ010000066.1 <> na Primary Assembly 42321 na scaffold_210 unplaced-scaffold na na CBDKDQ010000067.1 <> na Primary Assembly 42141 na scaffold_228 unplaced-scaffold na na CBDKDQ010000068.1 <> na Primary Assembly 36992 na scaffold_229 unplaced-scaffold na na CBDKDQ010000069.1 <> na Primary Assembly 36800 na scaffold_237 unplaced-scaffold na na CBDKDQ010000070.1 <> na Primary Assembly 33499 na scaffold_246 unplaced-scaffold na na CBDKDQ010000071.1 <> na Primary Assembly 31650 na scaffold_247 unplaced-scaffold na na CBDKDQ010000072.1 <> na Primary Assembly 31492 na scaffold_255 unplaced-scaffold na na CBDKDQ010000073.1 <> na Primary Assembly 29914 na scaffold_266 unplaced-scaffold na na CBDKDQ010000074.1 <> na Primary Assembly 27062 na scaffold_281 unplaced-scaffold na na CBDKDQ010000075.1 <> na Primary Assembly 23401 na scaffold_285 unplaced-scaffold na na CBDKDQ010000076.1 <> na Primary Assembly 22335 na scaffold_291 unplaced-scaffold na na CBDKDQ010000077.1 <> na Primary Assembly 21919 na scaffold_301 unplaced-scaffold na na CBDKDQ010000078.1 <> na Primary Assembly 20000 na scaffold_304 unplaced-scaffold na na CBDKDQ010000079.1 <> na Primary Assembly 19870 na scaffold_307 unplaced-scaffold na na CBDKDQ010000080.1 <> na Primary Assembly 19692 na scaffold_313 unplaced-scaffold na na CBDKDQ010000081.1 <> na Primary Assembly 19136 na scaffold_321 unplaced-scaffold na na CBDKDQ010000082.1 <> na Primary Assembly 17879 na scaffold_326 unplaced-scaffold na na CBDKDQ010000083.1 <> na Primary Assembly 17212 na scaffold_329 unplaced-scaffold na na CBDKDQ010000084.1 <> na Primary Assembly 16577 na scaffold_337 unplaced-scaffold na na CBDKDQ010000085.1 <> na Primary Assembly 15866 na scaffold_340 unplaced-scaffold na na CBDKDQ010000086.1 <> na Primary Assembly 15734 na scaffold_347 unplaced-scaffold na na CBDKDQ010000087.1 <> na Primary Assembly 14921 na scaffold_348 unplaced-scaffold na na CBDKDQ010000088.1 <> na Primary Assembly 14786 na scaffold_350 unplaced-scaffold na na CBDKDQ010000089.1 <> na Primary Assembly 14048 na scaffold_351 unplaced-scaffold na na CBDKDQ010000090.1 <> na Primary Assembly 13781 na scaffold_352 unplaced-scaffold na na CBDKDQ010000091.1 <> na Primary Assembly 13724 na scaffold_357 unplaced-scaffold na na CBDKDQ010000092.1 <> na Primary Assembly 13320 na scaffold_362 unplaced-scaffold na na CBDKDQ010000093.1 <> na Primary Assembly 12249 na scaffold_365 unplaced-scaffold na na CBDKDQ010000094.1 <> na Primary Assembly 11121 na scaffold_368 unplaced-scaffold na na CBDKDQ010000095.1 <> na Primary Assembly 11000 na scaffold_369 unplaced-scaffold na na CBDKDQ010000096.1 <> na Primary Assembly 10972 na scaffold_370 unplaced-scaffold na na CBDKDQ010000097.1 <> na Primary Assembly 10858 na scaffold_372 unplaced-scaffold na na CBDKDQ010000098.1 <> na Primary Assembly 10803 na scaffold_373 unplaced-scaffold na na CBDKDQ010000099.1 <> na Primary Assembly 10610 na scaffold_375 unplaced-scaffold na na CBDKDQ010000100.1 <> na Primary Assembly 10405 na scaffold_376 unplaced-scaffold na na CBDKDQ010000101.1 <> na Primary Assembly 10390 na scaffold_377 unplaced-scaffold na na CBDKDQ010000102.1 <> na Primary Assembly 10383 na mitochondrion_1 assembled-molecule MIT Mitochondrion OZ261553.1 <> na non-nuclear 16526 na