# Assembly name: lpSchNigr1.hap1.2 # Organism name: Schoenus nigricans (monocots) # Taxid: 76506 # BioSample: SAMEA110450292 # BioProject: PRJEB90882 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-04-27 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CBFDZK02 # Assembly method: various # Genome coverage: 143x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_965614465.2 # Linked assembly: GCA_965614435.2 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_965614464.2 Primary Assembly ## GCA_965614466.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ277373.1 <> na Primary Assembly 73774427 na SUPER_2 assembled-molecule 2 Chromosome OZ277374.1 <> na Primary Assembly 49669960 na SUPER_3 assembled-molecule 3 Chromosome OZ277375.1 <> na Primary Assembly 43812618 na SUPER_4 assembled-molecule 4 Chromosome OZ277376.1 <> na Primary Assembly 41564868 na SUPER_5 assembled-molecule 5 Chromosome OZ277377.1 <> na Primary Assembly 41350767 na SUPER_6 assembled-molecule 6 Chromosome OZ277378.1 <> na Primary Assembly 40469237 na SUPER_7 assembled-molecule 7 Chromosome OZ277379.1 <> na Primary Assembly 39133425 na SUPER_8 assembled-molecule 8 Chromosome OZ277380.1 <> na Primary Assembly 38215946 na SUPER_9 assembled-molecule 9 Chromosome OZ277381.1 <> na Primary Assembly 38118163 na SUPER_10 assembled-molecule 10 Chromosome OZ277382.1 <> na Primary Assembly 36737198 na SUPER_11 assembled-molecule 11 Chromosome OZ277383.1 <> na Primary Assembly 36512541 na SUPER_12 assembled-molecule 12 Chromosome OZ277384.1 <> na Primary Assembly 35126180 na SUPER_13 assembled-molecule 13 Chromosome OZ277385.1 <> na Primary Assembly 32877710 na SUPER_14 assembled-molecule 14 Chromosome OZ277386.1 <> na Primary Assembly 31711859 na SUPER_15 assembled-molecule 15 Chromosome OZ277387.1 <> na Primary Assembly 30627533 na SUPER_16 assembled-molecule 16 Chromosome OZ277388.1 <> na Primary Assembly 30073268 na SUPER_17 assembled-molecule 17 Chromosome OZ277389.1 <> na Primary Assembly 29732852 na SUPER_18 assembled-molecule 18 Chromosome OZ277390.1 <> na Primary Assembly 29399474 na SUPER_19 assembled-molecule 19 Chromosome OZ277391.1 <> na Primary Assembly 28260402 na SUPER_20 assembled-molecule 20 Chromosome OZ277392.1 <> na Primary Assembly 21489263 na SUPER_21 assembled-molecule 21 Chromosome OZ277393.1 <> na Primary Assembly 21334702 na HAP1_SCAFFOLD_34 unplaced-scaffold na na CBFDZK020000001.1 <> na Primary Assembly 375895 na HAP1_SCAFFOLD_35 unplaced-scaffold na na CBFDZK020000002.1 <> na Primary Assembly 368774 na HAP1_SCAFFOLD_40 unplaced-scaffold na na CBFDZK020000003.1 <> na Primary Assembly 250793 na HAP1_SCAFFOLD_42 unplaced-scaffold na na CBFDZK020000004.1 <> na Primary Assembly 243073 na HAP1_SCAFFOLD_46 unplaced-scaffold na na CBFDZK020000005.1 <> na Primary Assembly 224660 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CBFDZK020000006.1 <> na Primary Assembly 210624 na HAP1_SCAFFOLD_51 unplaced-scaffold na na CBFDZK020000007.1 <> na Primary Assembly 205770 na HAP1_SCAFFOLD_52 unplaced-scaffold na na CBFDZK020000008.1 <> na Primary Assembly 203482 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CBFDZK020000009.1 <> na Primary Assembly 175537 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CBFDZK020000010.1 <> na Primary Assembly 173764 na HAP1_SCAFFOLD_62 unplaced-scaffold na na CBFDZK020000011.1 <> na Primary Assembly 171231 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CBFDZK020000012.1 <> na Primary Assembly 170691 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CBFDZK020000013.1 <> na Primary Assembly 167057 na HAP1_SCAFFOLD_66 unplaced-scaffold na na CBFDZK020000014.1 <> na Primary Assembly 164775 na HAP1_SCAFFOLD_69 unplaced-scaffold na na CBFDZK020000015.1 <> na Primary Assembly 158161 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CBFDZK020000016.1 <> na Primary Assembly 146726 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CBFDZK020000017.1 <> na Primary Assembly 143494 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CBFDZK020000018.1 <> na Primary Assembly 128447 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CBFDZK020000019.1 <> na Primary Assembly 127073 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CBFDZK020000020.1 <> na Primary Assembly 119260 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CBFDZK020000021.1 <> na Primary Assembly 118976 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CBFDZK020000022.1 <> na Primary Assembly 117585 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CBFDZK020000023.1 <> na Primary Assembly 113314 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CBFDZK020000024.1 <> na Primary Assembly 112709 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CBFDZK020000025.1 <> na Primary Assembly 110764 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CBFDZK020000026.1 <> na Primary Assembly 110084 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CBFDZK020000027.1 <> na Primary Assembly 109186 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CBFDZK020000028.1 <> na Primary Assembly 106352 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CBFDZK020000029.1 <> na Primary Assembly 102807 na HAP1_SCAFFOLD_117 unplaced-scaffold na na CBFDZK020000030.1 <> na Primary Assembly 102415 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CBFDZK020000031.1 <> na Primary Assembly 95496 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CBFDZK020000032.1 <> na Primary Assembly 91748 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CBFDZK020000033.1 <> na Primary Assembly 90818 na HAP1_SCAFFOLD_143 unplaced-scaffold na na CBFDZK020000034.1 <> na Primary Assembly 88389 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CBFDZK020000035.1 <> na Primary Assembly 87242 na HAP1_SCAFFOLD_147 unplaced-scaffold na na CBFDZK020000036.1 <> na Primary Assembly 86643 na HAP1_SCAFFOLD_171 unplaced-scaffold na na CBFDZK020000037.1 <> na Primary Assembly 80633 na HAP1_SCAFFOLD_178 unplaced-scaffold na na CBFDZK020000038.1 <> na Primary Assembly 79342 na HAP1_SCAFFOLD_181 unplaced-scaffold na na CBFDZK020000039.1 <> na Primary Assembly 78350 na HAP1_SCAFFOLD_190 unplaced-scaffold na na CBFDZK020000040.1 <> na Primary Assembly 75361 na HAP1_SCAFFOLD_196 unplaced-scaffold na na CBFDZK020000041.1 <> na Primary Assembly 73411 na HAP1_SCAFFOLD_207 unplaced-scaffold na na CBFDZK020000042.1 <> na Primary Assembly 71052 na HAP1_SCAFFOLD_231 unplaced-scaffold na na CBFDZK020000043.1 <> na Primary Assembly 66565 na HAP1_SCAFFOLD_240 unplaced-scaffold na na CBFDZK020000044.1 <> na Primary Assembly 65048 na HAP1_SCAFFOLD_255 unplaced-scaffold na na CBFDZK020000045.1 <> na Primary Assembly 63000 na HAP1_SCAFFOLD_290 unplaced-scaffold na na CBFDZK020000046.1 <> na Primary Assembly 59449 na HAP1_SCAFFOLD_297 unplaced-scaffold na na CBFDZK020000047.1 <> na Primary Assembly 58977 na HAP1_SCAFFOLD_319 unplaced-scaffold na na CBFDZK020000048.1 <> na Primary Assembly 57124 na HAP1_SCAFFOLD_333 unplaced-scaffold na na CBFDZK020000049.1 <> na Primary Assembly 56000 na HAP1_SCAFFOLD_334 unplaced-scaffold na na CBFDZK020000050.1 <> na Primary Assembly 55610 na HAP1_SCAFFOLD_343 unplaced-scaffold na na CBFDZK020000051.1 <> na Primary Assembly 54904 na HAP1_SCAFFOLD_346 unplaced-scaffold na na CBFDZK020000052.1 <> na Primary Assembly 54787 na HAP1_SCAFFOLD_352 unplaced-scaffold na na CBFDZK020000053.1 <> na Primary Assembly 54310 na HAP1_SCAFFOLD_395 unplaced-scaffold na na CBFDZK020000054.1 <> na Primary Assembly 52010 na HAP1_SCAFFOLD_402 unplaced-scaffold na na CBFDZK020000055.1 <> na Primary Assembly 51597 na HAP1_SCAFFOLD_403 unplaced-scaffold na na CBFDZK020000056.1 <> na Primary Assembly 51537 na HAP1_SCAFFOLD_410 unplaced-scaffold na na CBFDZK020000057.1 <> na Primary Assembly 51045 na HAP1_SCAFFOLD_436 unplaced-scaffold na na CBFDZK020000058.1 <> na Primary Assembly 49797 na HAP1_SCAFFOLD_442 unplaced-scaffold na na CBFDZK020000059.1 <> na Primary Assembly 49455 na HAP1_SCAFFOLD_448 unplaced-scaffold na na CBFDZK020000060.1 <> na Primary Assembly 48960 na HAP1_SCAFFOLD_462 unplaced-scaffold na na CBFDZK020000061.1 <> na Primary Assembly 48415 na HAP1_SCAFFOLD_488 unplaced-scaffold na na CBFDZK020000062.1 <> na Primary Assembly 47291 na HAP1_SCAFFOLD_510 unplaced-scaffold na na CBFDZK020000063.1 <> na Primary Assembly 46444 na HAP1_SCAFFOLD_519 unplaced-scaffold na na CBFDZK020000064.1 <> na Primary Assembly 46300 na HAP1_SCAFFOLD_543 unplaced-scaffold na na CBFDZK020000065.1 <> na Primary Assembly 45237 na HAP1_SCAFFOLD_613 unplaced-scaffold na na CBFDZK020000066.1 <> na Primary Assembly 42686 na HAP1_SCAFFOLD_637 unplaced-scaffold na na CBFDZK020000067.1 <> na Primary Assembly 41958 na HAP1_SCAFFOLD_680 unplaced-scaffold na na CBFDZK020000068.1 <> na Primary Assembly 40645 na HAP1_SCAFFOLD_738 unplaced-scaffold na na CBFDZK020000069.1 <> na Primary Assembly 39230 na HAP1_SCAFFOLD_831 unplaced-scaffold na na CBFDZK020000070.1 <> na Primary Assembly 36722 na HAP1_SCAFFOLD_898 unplaced-scaffold na na CBFDZK020000071.1 <> na Primary Assembly 34817 na HAP1_SCAFFOLD_911 unplaced-scaffold na na CBFDZK020000072.1 <> na Primary Assembly 34275 na HAP1_SCAFFOLD_955 unplaced-scaffold na na CBFDZK020000073.1 <> na Primary Assembly 32924 na HAP1_SCAFFOLD_956 unplaced-scaffold na na CBFDZK020000074.1 <> na Primary Assembly 32866 na HAP1_SCAFFOLD_983 unplaced-scaffold na na CBFDZK020000075.1 <> na Primary Assembly 31712 na HAP1_SCAFFOLD_993 unplaced-scaffold na na CBFDZK020000076.1 <> na Primary Assembly 31233 na HAP1_SCAFFOLD_1000 unplaced-scaffold na na CBFDZK020000077.1 <> na Primary Assembly 31031 na HAP1_SCAFFOLD_1015 unplaced-scaffold na na CBFDZK020000078.1 <> na Primary Assembly 30584 na HAP1_SCAFFOLD_1057 unplaced-scaffold na na CBFDZK020000079.1 <> na Primary Assembly 28833 na HAP1_SCAFFOLD_1076 unplaced-scaffold na na CBFDZK020000080.1 <> na Primary Assembly 28000 na HAP1_SCAFFOLD_1097 unplaced-scaffold na na CBFDZK020000081.1 <> na Primary Assembly 27000 na HAP1_SCAFFOLD_1142 unplaced-scaffold na na CBFDZK020000082.1 <> na Primary Assembly 22000 na HAP1_SCAFFOLD_1143 unplaced-scaffold na na CBFDZK020000083.1 <> na Primary Assembly 21950 na HAP1_SCAFFOLD_1159 unplaced-scaffold na na CBFDZK020000084.1 <> na Primary Assembly 15478 na HAP1_SCAFFOLD_1167 unplaced-scaffold na na CBFDZK020000085.1 <> na Primary Assembly 10203 na scaffold_MT_1 assembled-molecule MT1 Mitochondrion OZ277394.1 <> na non-nuclear 1236502 na scaffold_MT_2 assembled-molecule MT2 Mitochondrion OZ277395.1 <> na non-nuclear 89476 na scaffold_MT_3 assembled-molecule MT3 Mitochondrion OZ277396.1 <> na non-nuclear 224810 na scaffold_MT_4 assembled-molecule MT4 Mitochondrion OZ277397.1 <> na non-nuclear 52535 na scaffold_MT_5 assembled-molecule MT5 Mitochondrion OZ277398.1 <> na non-nuclear 70215 na scaffold_Pltd_1 assembled-molecule Pltd Chloroplast OZ463249.1 <> na non-nuclear 180031 na