# Assembly name: cjLepCupr1.1 # Organism name: Lepidozia cupressina (liverworts) # Taxid: 402117 # BioSample: SAMEA111383040 # BioProject: PRJEB94091 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2025-07-27 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CBFFQY01 # Assembly method: various # Genome coverage: 39x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_965644175.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_965644174.1 Primary Assembly ## GCA_965644176.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ286300.1 <> na Primary Assembly 129990731 na SUPER_2 assembled-molecule 2 Chromosome OZ286301.1 <> na Primary Assembly 69739682 na SUPER_3 assembled-molecule 3 Chromosome OZ286302.1 <> na Primary Assembly 68374566 na SUPER_4 assembled-molecule 4 Chromosome OZ286303.1 <> na Primary Assembly 55480921 na SUPER_5 assembled-molecule 5 Chromosome OZ286304.1 <> na Primary Assembly 54488955 na SUPER_6 assembled-molecule 6 Chromosome OZ286305.1 <> na Primary Assembly 52240391 na SUPER_7 assembled-molecule 7 Chromosome OZ286306.1 <> na Primary Assembly 49632899 na SUPER_8 assembled-molecule 8 Chromosome OZ286307.1 <> na Primary Assembly 41610877 na SUPER_9 assembled-molecule 9 Chromosome OZ286308.1 <> na Primary Assembly 41345972 na SUPER_10 assembled-molecule 10 Chromosome OZ286309.1 <> na Primary Assembly 15544995 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome CBFFQY010000001.1 <> na Primary Assembly 49051 na SUPER_1_unloc_2 unlocalized-scaffold 1 Chromosome CBFFQY010000002.1 <> na Primary Assembly 38787 na SUPER_1_unloc_3 unlocalized-scaffold 1 Chromosome CBFFQY010000003.1 <> na Primary Assembly 37974 na SUPER_1_unloc_4 unlocalized-scaffold 1 Chromosome CBFFQY010000004.1 <> na Primary Assembly 34437 na SUPER_1_unloc_5 unlocalized-scaffold 1 Chromosome CBFFQY010000005.1 <> na Primary Assembly 33817 na SUPER_1_unloc_6 unlocalized-scaffold 1 Chromosome CBFFQY010000006.1 <> na Primary Assembly 33372 na SUPER_6_unloc_1 unlocalized-scaffold 6 Chromosome CBFFQY010000007.1 <> na Primary Assembly 30076 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome CBFFQY010000008.1 <> na Primary Assembly 72991 na SCAFFOLD_56 unplaced-scaffold na na CBFFQY010000009.1 <> na Primary Assembly 84394 na SCAFFOLD_73 unplaced-scaffold na na CBFFQY010000010.1 <> na Primary Assembly 47889 na SCAFFOLD_75 unplaced-scaffold na na CBFFQY010000011.1 <> na Primary Assembly 39744 na SCAFFOLD_78 unplaced-scaffold na na CBFFQY010000012.1 <> na Primary Assembly 38751 na SCAFFOLD_79 unplaced-scaffold na na CBFFQY010000013.1 <> na Primary Assembly 38724 na SCAFFOLD_80 unplaced-scaffold na na CBFFQY010000014.1 <> na Primary Assembly 37985 na SCAFFOLD_83 unplaced-scaffold na na CBFFQY010000015.1 <> na Primary Assembly 37766 na SCAFFOLD_85 unplaced-scaffold na na CBFFQY010000016.1 <> na Primary Assembly 37263 na SCAFFOLD_87 unplaced-scaffold na na CBFFQY010000017.1 <> na Primary Assembly 36860 na SCAFFOLD_90 unplaced-scaffold na na CBFFQY010000018.1 <> na Primary Assembly 34490 na SCAFFOLD_97 unplaced-scaffold na na CBFFQY010000019.1 <> na Primary Assembly 33257 na SCAFFOLD_99 unplaced-scaffold na na CBFFQY010000020.1 <> na Primary Assembly 32915 na SCAFFOLD_100 unplaced-scaffold na na CBFFQY010000021.1 <> na Primary Assembly 32811 na SCAFFOLD_101 unplaced-scaffold na na CBFFQY010000022.1 <> na Primary Assembly 32354 na SCAFFOLD_104 unplaced-scaffold na na CBFFQY010000023.1 <> na Primary Assembly 32058 na SCAFFOLD_106 unplaced-scaffold na na CBFFQY010000024.1 <> na Primary Assembly 31652 na SCAFFOLD_107 unplaced-scaffold na na CBFFQY010000025.1 <> na Primary Assembly 31595 na SCAFFOLD_110 unplaced-scaffold na na CBFFQY010000026.1 <> na Primary Assembly 30757 na SCAFFOLD_117 unplaced-scaffold na na CBFFQY010000027.1 <> na Primary Assembly 30369 na SCAFFOLD_118 unplaced-scaffold na na CBFFQY010000028.1 <> na Primary Assembly 30277 na SCAFFOLD_121 unplaced-scaffold na na CBFFQY010000029.1 <> na Primary Assembly 29674 na SCAFFOLD_123 unplaced-scaffold na na CBFFQY010000030.1 <> na Primary Assembly 29475 na SCAFFOLD_130 unplaced-scaffold na na CBFFQY010000031.1 <> na Primary Assembly 28814 na SCAFFOLD_136 unplaced-scaffold na na CBFFQY010000032.1 <> na Primary Assembly 28399 na SCAFFOLD_140 unplaced-scaffold na na CBFFQY010000033.1 <> na Primary Assembly 28155 na SCAFFOLD_145 unplaced-scaffold na na CBFFQY010000034.1 <> na Primary Assembly 28008 na SCAFFOLD_153 unplaced-scaffold na na CBFFQY010000035.1 <> na Primary Assembly 27587 na SCAFFOLD_155 unplaced-scaffold na na CBFFQY010000036.1 <> na Primary Assembly 27447 na SCAFFOLD_159 unplaced-scaffold na na CBFFQY010000037.1 <> na Primary Assembly 27153 na SCAFFOLD_170 unplaced-scaffold na na CBFFQY010000038.1 <> na Primary Assembly 26486 na SCAFFOLD_174 unplaced-scaffold na na CBFFQY010000039.1 <> na Primary Assembly 26367 na SCAFFOLD_177 unplaced-scaffold na na CBFFQY010000040.1 <> na Primary Assembly 26263 na SCAFFOLD_183 unplaced-scaffold na na CBFFQY010000041.1 <> na Primary Assembly 25870 na SCAFFOLD_191 unplaced-scaffold na na CBFFQY010000042.1 <> na Primary Assembly 25633 na SCAFFOLD_193 unplaced-scaffold na na CBFFQY010000043.1 <> na Primary Assembly 25489 na SCAFFOLD_195 unplaced-scaffold na na CBFFQY010000044.1 <> na Primary Assembly 25462 na SCAFFOLD_196 unplaced-scaffold na na CBFFQY010000045.1 <> na Primary Assembly 25444 na SCAFFOLD_210 unplaced-scaffold na na CBFFQY010000046.1 <> na Primary Assembly 24806 na SCAFFOLD_213 unplaced-scaffold na na CBFFQY010000047.1 <> na Primary Assembly 24677 na SCAFFOLD_219 unplaced-scaffold na na CBFFQY010000048.1 <> na Primary Assembly 24381 na SCAFFOLD_223 unplaced-scaffold na na CBFFQY010000049.1 <> na Primary Assembly 24270 na SCAFFOLD_226 unplaced-scaffold na na CBFFQY010000050.1 <> na Primary Assembly 24147 na SCAFFOLD_229 unplaced-scaffold na na CBFFQY010000051.1 <> na Primary Assembly 24011 na SCAFFOLD_233 unplaced-scaffold na na CBFFQY010000052.1 <> na Primary Assembly 23904 na SCAFFOLD_237 unplaced-scaffold na na CBFFQY010000053.1 <> na Primary Assembly 23829 na SCAFFOLD_239 unplaced-scaffold na na CBFFQY010000054.1 <> na Primary Assembly 23787 na SCAFFOLD_240 unplaced-scaffold na na CBFFQY010000055.1 <> na Primary Assembly 23754 na SCAFFOLD_248 unplaced-scaffold na na CBFFQY010000056.1 <> na Primary Assembly 23408 na SCAFFOLD_249 unplaced-scaffold na na CBFFQY010000057.1 <> na Primary Assembly 23347 na SCAFFOLD_253 unplaced-scaffold na na CBFFQY010000058.1 <> na Primary Assembly 23267 na SCAFFOLD_255 unplaced-scaffold na na CBFFQY010000059.1 <> na Primary Assembly 23202 na SCAFFOLD_256 unplaced-scaffold na na CBFFQY010000060.1 <> na Primary Assembly 23169 na SCAFFOLD_260 unplaced-scaffold na na CBFFQY010000061.1 <> na Primary Assembly 23080 na SCAFFOLD_262 unplaced-scaffold na na CBFFQY010000062.1 <> na Primary Assembly 22963 na SCAFFOLD_264 unplaced-scaffold na na CBFFQY010000063.1 <> na Primary Assembly 22883 na SCAFFOLD_266 unplaced-scaffold na na CBFFQY010000064.1 <> na Primary Assembly 22862 na SCAFFOLD_267 unplaced-scaffold na na CBFFQY010000065.1 <> na Primary Assembly 22840 na SCAFFOLD_269 unplaced-scaffold na na CBFFQY010000066.1 <> na Primary Assembly 22807 na SCAFFOLD_275 unplaced-scaffold na na CBFFQY010000067.1 <> na Primary Assembly 22611 na SCAFFOLD_280 unplaced-scaffold na na CBFFQY010000068.1 <> na Primary Assembly 22543 na SCAFFOLD_284 unplaced-scaffold na na CBFFQY010000069.1 <> na Primary Assembly 22502 na SCAFFOLD_287 unplaced-scaffold na na CBFFQY010000070.1 <> na Primary Assembly 22411 na SCAFFOLD_289 unplaced-scaffold na na CBFFQY010000071.1 <> na Primary Assembly 22406 na SCAFFOLD_296 unplaced-scaffold na na CBFFQY010000072.1 <> na Primary Assembly 22184 na SCAFFOLD_297 unplaced-scaffold na na CBFFQY010000073.1 <> na Primary Assembly 22169 na SCAFFOLD_300 unplaced-scaffold na na CBFFQY010000074.1 <> na Primary Assembly 22154 na SCAFFOLD_305 unplaced-scaffold na na CBFFQY010000075.1 <> na Primary Assembly 22019 na SCAFFOLD_306 unplaced-scaffold na na CBFFQY010000076.1 <> na Primary Assembly 22017 na SCAFFOLD_308 unplaced-scaffold na na CBFFQY010000077.1 <> na Primary Assembly 21995 na SCAFFOLD_317 unplaced-scaffold na na CBFFQY010000078.1 <> na Primary Assembly 21782 na SCAFFOLD_319 unplaced-scaffold na na CBFFQY010000079.1 <> na Primary Assembly 21774 na SCAFFOLD_327 unplaced-scaffold na na CBFFQY010000080.1 <> na Primary Assembly 21618 na SCAFFOLD_332 unplaced-scaffold na na CBFFQY010000081.1 <> na Primary Assembly 21558 na SCAFFOLD_334 unplaced-scaffold na na CBFFQY010000082.1 <> na Primary Assembly 21513 na SCAFFOLD_336 unplaced-scaffold na na CBFFQY010000083.1 <> na Primary Assembly 21464 na SCAFFOLD_347 unplaced-scaffold na na CBFFQY010000084.1 <> na Primary Assembly 21292 na SCAFFOLD_350 unplaced-scaffold na na CBFFQY010000085.1 <> na Primary Assembly 21237 na SCAFFOLD_351 unplaced-scaffold na na CBFFQY010000086.1 <> na Primary Assembly 21177 na SCAFFOLD_357 unplaced-scaffold na na CBFFQY010000087.1 <> na Primary Assembly 21078 na SCAFFOLD_358 unplaced-scaffold na na CBFFQY010000088.1 <> na Primary Assembly 21076 na SCAFFOLD_359 unplaced-scaffold na na CBFFQY010000089.1 <> na Primary Assembly 21072 na SCAFFOLD_361 unplaced-scaffold na na CBFFQY010000090.1 <> na Primary Assembly 21065 na SCAFFOLD_371 unplaced-scaffold na na CBFFQY010000091.1 <> na Primary Assembly 20917 na SCAFFOLD_374 unplaced-scaffold na na CBFFQY010000092.1 <> na Primary Assembly 20823 na SCAFFOLD_375 unplaced-scaffold na na CBFFQY010000093.1 <> na Primary Assembly 20782 na SCAFFOLD_378 unplaced-scaffold na na CBFFQY010000094.1 <> na Primary Assembly 20719 na SCAFFOLD_380 unplaced-scaffold na na CBFFQY010000095.1 <> na Primary Assembly 20675 na SCAFFOLD_383 unplaced-scaffold na na CBFFQY010000096.1 <> na Primary Assembly 20629 na SCAFFOLD_384 unplaced-scaffold na na CBFFQY010000097.1 <> na Primary Assembly 20618 na SCAFFOLD_385 unplaced-scaffold na na CBFFQY010000098.1 <> na Primary Assembly 20611 na SCAFFOLD_386 unplaced-scaffold na na CBFFQY010000099.1 <> na Primary Assembly 20603 na SCAFFOLD_387 unplaced-scaffold na na CBFFQY010000100.1 <> na Primary Assembly 20594 na SCAFFOLD_393 unplaced-scaffold na na CBFFQY010000101.1 <> na Primary Assembly 20482 na SCAFFOLD_395 unplaced-scaffold na na CBFFQY010000102.1 <> na Primary Assembly 20474 na SCAFFOLD_402 unplaced-scaffold na na CBFFQY010000103.1 <> na Primary Assembly 20380 na SCAFFOLD_405 unplaced-scaffold na na CBFFQY010000104.1 <> na Primary Assembly 20260 na SCAFFOLD_423 unplaced-scaffold na na CBFFQY010000105.1 <> na Primary Assembly 19841 na SCAFFOLD_429 unplaced-scaffold na na CBFFQY010000106.1 <> na Primary Assembly 19749 na SCAFFOLD_444 unplaced-scaffold na na CBFFQY010000107.1 <> na Primary Assembly 19502 na SCAFFOLD_449 unplaced-scaffold na na CBFFQY010000108.1 <> na Primary Assembly 19418 na SCAFFOLD_454 unplaced-scaffold na na CBFFQY010000109.1 <> na Primary Assembly 19375 na SCAFFOLD_465 unplaced-scaffold na na CBFFQY010000110.1 <> na Primary Assembly 19198 na SCAFFOLD_466 unplaced-scaffold na na CBFFQY010000111.1 <> na Primary Assembly 19136 na SCAFFOLD_470 unplaced-scaffold na na CBFFQY010000112.1 <> na Primary Assembly 19066 na SCAFFOLD_471 unplaced-scaffold na na CBFFQY010000113.1 <> na Primary Assembly 19061 na SCAFFOLD_477 unplaced-scaffold na na CBFFQY010000114.1 <> na Primary Assembly 18998 na SCAFFOLD_478 unplaced-scaffold na na CBFFQY010000115.1 <> na Primary Assembly 18990 na SCAFFOLD_480 unplaced-scaffold na na CBFFQY010000116.1 <> na Primary Assembly 18971 na SCAFFOLD_482 unplaced-scaffold na na CBFFQY010000117.1 <> na Primary Assembly 18951 na SCAFFOLD_486 unplaced-scaffold na na CBFFQY010000118.1 <> na Primary Assembly 18927 na SCAFFOLD_498 unplaced-scaffold na na CBFFQY010000119.1 <> na Primary Assembly 18798 na SCAFFOLD_499 unplaced-scaffold na na CBFFQY010000120.1 <> na Primary Assembly 18782 na SCAFFOLD_500 unplaced-scaffold na na CBFFQY010000121.1 <> na Primary Assembly 18770 na SCAFFOLD_505 unplaced-scaffold na na CBFFQY010000122.1 <> na Primary Assembly 18722 na SCAFFOLD_512 unplaced-scaffold na na CBFFQY010000123.1 <> na Primary Assembly 18620 na SCAFFOLD_518 unplaced-scaffold na na CBFFQY010000124.1 <> na Primary Assembly 18537 na SCAFFOLD_531 unplaced-scaffold na na CBFFQY010000125.1 <> na Primary Assembly 18342 na SCAFFOLD_554 unplaced-scaffold na na CBFFQY010000126.1 <> na Primary Assembly 18057 na SCAFFOLD_561 unplaced-scaffold na na CBFFQY010000127.1 <> na Primary Assembly 17980 na SCAFFOLD_567 unplaced-scaffold na na CBFFQY010000128.1 <> na Primary Assembly 17916 na SCAFFOLD_575 unplaced-scaffold na na CBFFQY010000129.1 <> na Primary Assembly 17859 na SCAFFOLD_583 unplaced-scaffold na na CBFFQY010000130.1 <> na Primary Assembly 17759 na SCAFFOLD_584 unplaced-scaffold na na CBFFQY010000131.1 <> na Primary Assembly 17758 na SCAFFOLD_585 unplaced-scaffold na na CBFFQY010000132.1 <> na Primary Assembly 17749 na SCAFFOLD_587 unplaced-scaffold na na CBFFQY010000133.1 <> na Primary Assembly 17715 na SCAFFOLD_593 unplaced-scaffold na na CBFFQY010000134.1 <> na Primary Assembly 17662 na SCAFFOLD_602 unplaced-scaffold na na CBFFQY010000135.1 <> na Primary Assembly 17533 na SCAFFOLD_611 unplaced-scaffold na na CBFFQY010000136.1 <> na Primary Assembly 17401 na SCAFFOLD_614 unplaced-scaffold na na CBFFQY010000137.1 <> na Primary Assembly 17356 na SCAFFOLD_616 unplaced-scaffold na na CBFFQY010000138.1 <> na Primary Assembly 17340 na SCAFFOLD_623 unplaced-scaffold na na CBFFQY010000139.1 <> na Primary Assembly 17267 na SCAFFOLD_638 unplaced-scaffold na na CBFFQY010000140.1 <> na Primary Assembly 17019 na SCAFFOLD_639 unplaced-scaffold na na CBFFQY010000141.1 <> na Primary Assembly 17013 na SCAFFOLD_640 unplaced-scaffold na na CBFFQY010000142.1 <> na Primary Assembly 17010 na SCAFFOLD_653 unplaced-scaffold na na CBFFQY010000143.1 <> na Primary Assembly 16867 na SCAFFOLD_654 unplaced-scaffold na na CBFFQY010000144.1 <> na Primary Assembly 16864 na SCAFFOLD_659 unplaced-scaffold na na CBFFQY010000145.1 <> na Primary Assembly 16755 na SCAFFOLD_662 unplaced-scaffold na na CBFFQY010000146.1 <> na Primary Assembly 16752 na SCAFFOLD_666 unplaced-scaffold na na CBFFQY010000147.1 <> na Primary Assembly 16725 na SCAFFOLD_668 unplaced-scaffold na na CBFFQY010000148.1 <> na Primary Assembly 16693 na SCAFFOLD_671 unplaced-scaffold na na CBFFQY010000149.1 <> na Primary Assembly 16671 na SCAFFOLD_677 unplaced-scaffold na na CBFFQY010000150.1 <> na Primary Assembly 16592 na SCAFFOLD_687 unplaced-scaffold na na CBFFQY010000151.1 <> na Primary Assembly 16503 na SCAFFOLD_690 unplaced-scaffold na na CBFFQY010000152.1 <> na Primary Assembly 16484 na SCAFFOLD_692 unplaced-scaffold na na CBFFQY010000153.1 <> na Primary Assembly 16466 na SCAFFOLD_698 unplaced-scaffold na na CBFFQY010000154.1 <> na Primary Assembly 16428 na SCAFFOLD_723 unplaced-scaffold na na CBFFQY010000155.1 <> na Primary Assembly 16084 na SCAFFOLD_727 unplaced-scaffold na na CBFFQY010000156.1 <> na Primary Assembly 16006 na SCAFFOLD_744 unplaced-scaffold na na CBFFQY010000157.1 <> na Primary Assembly 15831 na SCAFFOLD_747 unplaced-scaffold na na CBFFQY010000158.1 <> na Primary Assembly 15774 na SCAFFOLD_752 unplaced-scaffold na na CBFFQY010000159.1 <> na Primary Assembly 15695 na SCAFFOLD_754 unplaced-scaffold na na CBFFQY010000160.1 <> na Primary Assembly 15680 na SCAFFOLD_783 unplaced-scaffold na na CBFFQY010000161.1 <> na Primary Assembly 15290 na SCAFFOLD_790 unplaced-scaffold na na CBFFQY010000162.1 <> na Primary Assembly 15242 na SCAFFOLD_799 unplaced-scaffold na na CBFFQY010000163.1 <> na Primary Assembly 15099 na SCAFFOLD_816 unplaced-scaffold na na CBFFQY010000164.1 <> na Primary Assembly 14782 na SCAFFOLD_819 unplaced-scaffold na na CBFFQY010000165.1 <> na Primary Assembly 14707 na SCAFFOLD_827 unplaced-scaffold na na CBFFQY010000166.1 <> na Primary Assembly 14499 na SCAFFOLD_828 unplaced-scaffold na na CBFFQY010000167.1 <> na Primary Assembly 14493 na SCAFFOLD_840 unplaced-scaffold na na CBFFQY010000168.1 <> na Primary Assembly 14406 na SCAFFOLD_857 unplaced-scaffold na na CBFFQY010000169.1 <> na Primary Assembly 14159 na SCAFFOLD_864 unplaced-scaffold na na CBFFQY010000170.1 <> na Primary Assembly 14101 na SCAFFOLD_869 unplaced-scaffold na na CBFFQY010000171.1 <> na Primary Assembly 14067 na SCAFFOLD_874 unplaced-scaffold na na CBFFQY010000172.1 <> na Primary Assembly 14023 na SCAFFOLD_880 unplaced-scaffold na na CBFFQY010000173.1 <> na Primary Assembly 13880 na SCAFFOLD_894 unplaced-scaffold na na CBFFQY010000174.1 <> na Primary Assembly 13627 na SCAFFOLD_897 unplaced-scaffold na na CBFFQY010000175.1 <> na Primary Assembly 13570 na SCAFFOLD_900 unplaced-scaffold na na CBFFQY010000176.1 <> na Primary Assembly 13539 na SCAFFOLD_909 unplaced-scaffold na na CBFFQY010000177.1 <> na Primary Assembly 13432 na SCAFFOLD_922 unplaced-scaffold na na CBFFQY010000178.1 <> na Primary Assembly 13028 na SCAFFOLD_946 unplaced-scaffold na na CBFFQY010000179.1 <> na Primary Assembly 12006 na SCAFFOLD_970 unplaced-scaffold na na CBFFQY010000180.1 <> na Primary Assembly 10412 na SCAFFOLD_973 unplaced-scaffold na na CBFFQY010000181.1 <> na Primary Assembly 9884 na SCAFFOLD_975 unplaced-scaffold na na CBFFQY010000182.1 <> na Primary Assembly 9767 na SCAFFOLD_976 unplaced-scaffold na na CBFFQY010000183.1 <> na Primary Assembly 9725 na SCAFFOLD_984 unplaced-scaffold na na CBFFQY010000184.1 <> na Primary Assembly 9033 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ286310.1 <> na non-nuclear 166351 na scaffold_Pltd_1 assembled-molecule Pltd Chloroplast OZ286311.1 <> na non-nuclear 118674 na