# Assembly name: ucChlLemn1.hap1.1 # Organism name: Chlorochytrium lemnae (green algae) # Taxid: 1199099 # BioSample: SAMEA12753557 # BioProject: PRJEB114329 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-06-22 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CFIRDV01 # Assembly method: various # Genome coverage: 282x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_984658185.1 # Linked assembly: GCA_984658155.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ479592.1 <> na Primary Assembly 3589600 na SUPER_2 assembled-molecule 2 Chromosome OZ479593.1 <> na Primary Assembly 3588278 na SUPER_3 assembled-molecule 3 Chromosome OZ479594.1 <> na Primary Assembly 3504286 na SUPER_4 assembled-molecule 4 Chromosome OZ479595.1 <> na Primary Assembly 3218320 na SUPER_5 assembled-molecule 5 Chromosome OZ479596.1 <> na Primary Assembly 3208450 na SUPER_6 assembled-molecule 6 Chromosome OZ479597.1 <> na Primary Assembly 2965595 na SUPER_7 assembled-molecule 7 Chromosome OZ479598.1 <> na Primary Assembly 2537306 na SUPER_8 assembled-molecule 8 Chromosome OZ479599.1 <> na Primary Assembly 2313782 na SUPER_9 assembled-molecule 9 Chromosome OZ479600.1 <> na Primary Assembly 2270653 na SUPER_10 assembled-molecule 10 Chromosome OZ479601.1 <> na Primary Assembly 2170689 na SUPER_11 assembled-molecule 11 Chromosome OZ479602.1 <> na Primary Assembly 2145661 na SUPER_12 assembled-molecule 12 Chromosome OZ479603.1 <> na Primary Assembly 1994165 na SUPER_13 assembled-molecule 13 Chromosome OZ479604.1 <> na Primary Assembly 1902755 na SUPER_14 assembled-molecule 14 Chromosome OZ479605.1 <> na Primary Assembly 1890795 na SUPER_15 assembled-molecule 15 Chromosome OZ479606.1 <> na Primary Assembly 1628073 na SUPER_16 assembled-molecule 16 Chromosome OZ479607.1 <> na Primary Assembly 1588876 na SUPER_17 assembled-molecule 17 Chromosome OZ479608.1 <> na Primary Assembly 1578058 na HAP1_SCAFFOLD_4 unplaced-scaffold na na CFIRDV010000001.1 <> na Primary Assembly 29364 na HAP1_SCAFFOLD_7 unplaced-scaffold na na CFIRDV010000002.1 <> na Primary Assembly 13792 na HAP1_SCAFFOLD_17 unplaced-scaffold na na CFIRDV010000003.1 <> na Primary Assembly 98512 na HAP1_SCAFFOLD_21 unplaced-scaffold na na CFIRDV010000004.1 <> na Primary Assembly 85000 na HAP1_SCAFFOLD_22 unplaced-scaffold na na CFIRDV010000005.1 <> na Primary Assembly 79470 na HAP1_SCAFFOLD_25 unplaced-scaffold na na CFIRDV010000006.1 <> na Primary Assembly 53701 na HAP1_SCAFFOLD_26 unplaced-scaffold na na CFIRDV010000007.1 <> na Primary Assembly 51547 na HAP1_SCAFFOLD_27 unplaced-scaffold na na CFIRDV010000008.1 <> na Primary Assembly 50086 na HAP1_SCAFFOLD_28 unplaced-scaffold na na CFIRDV010000009.1 <> na Primary Assembly 46321 na HAP1_SCAFFOLD_29 unplaced-scaffold na na CFIRDV010000010.1 <> na Primary Assembly 40422 na HAP1_SCAFFOLD_30 unplaced-scaffold na na CFIRDV010000011.1 <> na Primary Assembly 40184 na HAP1_SCAFFOLD_31 unplaced-scaffold na na CFIRDV010000012.1 <> na Primary Assembly 37844 na HAP1_SCAFFOLD_32 unplaced-scaffold na na CFIRDV010000013.1 <> na Primary Assembly 36849 na HAP1_SCAFFOLD_33 unplaced-scaffold na na CFIRDV010000014.1 <> na Primary Assembly 36071 na HAP1_SCAFFOLD_34 unplaced-scaffold na na CFIRDV010000015.1 <> na Primary Assembly 34830 na HAP1_SCAFFOLD_35 unplaced-scaffold na na CFIRDV010000016.1 <> na Primary Assembly 34399 na HAP1_SCAFFOLD_36 unplaced-scaffold na na CFIRDV010000017.1 <> na Primary Assembly 34177 na HAP1_SCAFFOLD_37 unplaced-scaffold na na CFIRDV010000018.1 <> na Primary Assembly 34147 na HAP1_SCAFFOLD_38 unplaced-scaffold na na CFIRDV010000019.1 <> na Primary Assembly 33902 na HAP1_SCAFFOLD_39 unplaced-scaffold na na CFIRDV010000020.1 <> na Primary Assembly 32009 na HAP1_SCAFFOLD_40 unplaced-scaffold na na CFIRDV010000021.1 <> na Primary Assembly 31700 na HAP1_SCAFFOLD_41 unplaced-scaffold na na CFIRDV010000022.1 <> na Primary Assembly 31166 na HAP1_SCAFFOLD_42 unplaced-scaffold na na CFIRDV010000023.1 <> na Primary Assembly 31093 na HAP1_SCAFFOLD_45 unplaced-scaffold na na CFIRDV010000024.1 <> na Primary Assembly 29138 na HAP1_SCAFFOLD_46 unplaced-scaffold na na CFIRDV010000025.1 <> na Primary Assembly 29067 na HAP1_SCAFFOLD_48 unplaced-scaffold na na CFIRDV010000026.1 <> na Primary Assembly 28646 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CFIRDV010000027.1 <> na Primary Assembly 27688 na HAP1_SCAFFOLD_51 unplaced-scaffold na na CFIRDV010000028.1 <> na Primary Assembly 27579 na HAP1_SCAFFOLD_53 unplaced-scaffold na na CFIRDV010000029.1 <> na Primary Assembly 27132 na HAP1_SCAFFOLD_54 unplaced-scaffold na na CFIRDV010000030.1 <> na Primary Assembly 26492 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CFIRDV010000031.1 <> na Primary Assembly 25937 na HAP1_SCAFFOLD_56 unplaced-scaffold na na CFIRDV010000032.1 <> na Primary Assembly 25447 na HAP1_SCAFFOLD_57 unplaced-scaffold na na CFIRDV010000033.1 <> na Primary Assembly 25179 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CFIRDV010000034.1 <> na Primary Assembly 25091 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CFIRDV010000035.1 <> na Primary Assembly 24821 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CFIRDV010000036.1 <> na Primary Assembly 24381 na HAP1_SCAFFOLD_62 unplaced-scaffold na na CFIRDV010000037.1 <> na Primary Assembly 23855 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CFIRDV010000038.1 <> na Primary Assembly 23290 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CFIRDV010000039.1 <> na Primary Assembly 23043 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CFIRDV010000040.1 <> na Primary Assembly 22752 na HAP1_SCAFFOLD_66 unplaced-scaffold na na CFIRDV010000041.1 <> na Primary Assembly 22534 na HAP1_SCAFFOLD_67 unplaced-scaffold na na CFIRDV010000042.1 <> na Primary Assembly 22291 na HAP1_SCAFFOLD_69 unplaced-scaffold na na CFIRDV010000043.1 <> na Primary Assembly 21223 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CFIRDV010000044.1 <> na Primary Assembly 21005 na HAP1_SCAFFOLD_71 unplaced-scaffold na na CFIRDV010000045.1 <> na Primary Assembly 20552 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CFIRDV010000046.1 <> na Primary Assembly 20030 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CFIRDV010000047.1 <> na Primary Assembly 19989 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CFIRDV010000048.1 <> na Primary Assembly 19831 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CFIRDV010000049.1 <> na Primary Assembly 19258 na HAP1_SCAFFOLD_76 unplaced-scaffold na na CFIRDV010000050.1 <> na Primary Assembly 18886 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CFIRDV010000051.1 <> na Primary Assembly 18802 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CFIRDV010000052.1 <> na Primary Assembly 18782 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CFIRDV010000053.1 <> na Primary Assembly 18694 na HAP1_SCAFFOLD_80 unplaced-scaffold na na CFIRDV010000054.1 <> na Primary Assembly 18572 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CFIRDV010000055.1 <> na Primary Assembly 18472 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CFIRDV010000056.1 <> na Primary Assembly 18280 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CFIRDV010000057.1 <> na Primary Assembly 18089 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CFIRDV010000058.1 <> na Primary Assembly 18083 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CFIRDV010000059.1 <> na Primary Assembly 17812 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CFIRDV010000060.1 <> na Primary Assembly 17524 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CFIRDV010000061.1 <> na Primary Assembly 16943 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CFIRDV010000062.1 <> na Primary Assembly 16727 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CFIRDV010000063.1 <> na Primary Assembly 16097 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CFIRDV010000064.1 <> na Primary Assembly 16064 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CFIRDV010000065.1 <> na Primary Assembly 16019 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CFIRDV010000066.1 <> na Primary Assembly 15873 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CFIRDV010000067.1 <> na Primary Assembly 15745 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CFIRDV010000068.1 <> na Primary Assembly 15289 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CFIRDV010000069.1 <> na Primary Assembly 15130 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CFIRDV010000070.1 <> na Primary Assembly 15092 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CFIRDV010000071.1 <> na Primary Assembly 14820 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CFIRDV010000072.1 <> na Primary Assembly 14569 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CFIRDV010000073.1 <> na Primary Assembly 14540 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CFIRDV010000074.1 <> na Primary Assembly 14421 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CFIRDV010000075.1 <> na Primary Assembly 14267 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CFIRDV010000076.1 <> na Primary Assembly 13662 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CFIRDV010000077.1 <> na Primary Assembly 13119 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CFIRDV010000078.1 <> na Primary Assembly 12583 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CFIRDV010000079.1 <> na Primary Assembly 12114 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ479609.1 <> na non-nuclear 21196 na scaffold_Pltd_1 assembled-molecule Pltd Chloroplast OZ479610.1 <> na non-nuclear 175428 na