# Assembly name: daScrUmbr1.hap1.1 # Organism name: Scrophularia umbrosa (eudicots) # Taxid: 942083 # BioSample: SAMEA114782674 # BioProject: PRJEB114407 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-06-26 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CFJLPB01 # Assembly method: various # Genome coverage: 75x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_984798885.1 # Linked assembly: GCA_984799045.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ482184.1 <> na Primary Assembly 62406656 na SUPER_2 assembled-molecule 2 Chromosome OZ482185.1 <> na Primary Assembly 60939175 na SUPER_3 assembled-molecule 3 Chromosome OZ482186.1 <> na Primary Assembly 60100463 na SUPER_4 assembled-molecule 4 Chromosome OZ482187.1 <> na Primary Assembly 56904508 na SUPER_5 assembled-molecule 5 Chromosome OZ482188.1 <> na Primary Assembly 52843221 na SUPER_6 assembled-molecule 6 Chromosome OZ482189.1 <> na Primary Assembly 49946310 na SUPER_7 assembled-molecule 7 Chromosome OZ482190.1 <> na Primary Assembly 49315706 na SUPER_8 assembled-molecule 8 Chromosome OZ482191.1 <> na Primary Assembly 48876655 na SUPER_9 assembled-molecule 9 Chromosome OZ482192.1 <> na Primary Assembly 48317411 na SUPER_10 assembled-molecule 10 Chromosome OZ482193.1 <> na Primary Assembly 47724839 na SUPER_11 assembled-molecule 11 Chromosome OZ482194.1 <> na Primary Assembly 47259137 na SUPER_12 assembled-molecule 12 Chromosome OZ482195.1 <> na Primary Assembly 46709319 na SUPER_13 assembled-molecule 13 Chromosome OZ482196.1 <> na Primary Assembly 46553122 na SUPER_14 assembled-molecule 14 Chromosome OZ482197.1 <> na Primary Assembly 46253288 na SUPER_15 assembled-molecule 15 Chromosome OZ482198.1 <> na Primary Assembly 45898842 na SUPER_16 assembled-molecule 16 Chromosome OZ482199.1 <> na Primary Assembly 45488736 na SUPER_17 assembled-molecule 17 Chromosome OZ482200.1 <> na Primary Assembly 45175639 na SUPER_18 assembled-molecule 18 Chromosome OZ482201.1 <> na Primary Assembly 45081007 na SUPER_19 assembled-molecule 19 Chromosome OZ482202.1 <> na Primary Assembly 44625275 na SUPER_20 assembled-molecule 20 Chromosome OZ482203.1 <> na Primary Assembly 38410325 na SUPER_21 assembled-molecule 21 Chromosome OZ482204.1 <> na Primary Assembly 43350416 na SUPER_22 assembled-molecule 22 Chromosome OZ482205.1 <> na Primary Assembly 42295688 na SUPER_23 assembled-molecule 23 Chromosome OZ482206.1 <> na Primary Assembly 42256511 na SUPER_24 assembled-molecule 24 Chromosome OZ482207.1 <> na Primary Assembly 39630412 na SUPER_25 assembled-molecule 25 Chromosome OZ482208.1 <> na Primary Assembly 37976729 na SUPER_26 assembled-molecule 26 Chromosome OZ482209.1 <> na Primary Assembly 36132946 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome CFJLPB010000001.1 <> na Primary Assembly 644995 na SUPER_20_unloc_2 unlocalized-scaffold 20 Chromosome CFJLPB010000002.1 <> na Primary Assembly 329930 na SUPER_20_unloc_3 unlocalized-scaffold 20 Chromosome CFJLPB010000003.1 <> na Primary Assembly 219209 na SUPER_20_unloc_4 unlocalized-scaffold 20 Chromosome CFJLPB010000004.1 <> na Primary Assembly 199196 na SUPER_20_unloc_5 unlocalized-scaffold 20 Chromosome CFJLPB010000005.1 <> na Primary Assembly 176749 na SUPER_20_unloc_6 unlocalized-scaffold 20 Chromosome CFJLPB010000006.1 <> na Primary Assembly 175564 na SUPER_20_unloc_7 unlocalized-scaffold 20 Chromosome CFJLPB010000007.1 <> na Primary Assembly 128249 na SUPER_20_unloc_8 unlocalized-scaffold 20 Chromosome CFJLPB010000008.1 <> na Primary Assembly 116169 na SUPER_20_unloc_9 unlocalized-scaffold 20 Chromosome CFJLPB010000009.1 <> na Primary Assembly 116127 na SUPER_20_unloc_10 unlocalized-scaffold 20 Chromosome CFJLPB010000010.1 <> na Primary Assembly 114051 na SUPER_20_unloc_11 unlocalized-scaffold 20 Chromosome CFJLPB010000011.1 <> na Primary Assembly 103083 na SUPER_20_unloc_12 unlocalized-scaffold 20 Chromosome CFJLPB010000012.1 <> na Primary Assembly 94905 na SUPER_20_unloc_13 unlocalized-scaffold 20 Chromosome CFJLPB010000013.1 <> na Primary Assembly 85926 na SUPER_20_unloc_14 unlocalized-scaffold 20 Chromosome CFJLPB010000014.1 <> na Primary Assembly 85154 na SUPER_20_unloc_15 unlocalized-scaffold 20 Chromosome CFJLPB010000015.1 <> na Primary Assembly 82361 na SUPER_20_unloc_16 unlocalized-scaffold 20 Chromosome CFJLPB010000016.1 <> na Primary Assembly 81058 na SUPER_20_unloc_17 unlocalized-scaffold 20 Chromosome CFJLPB010000017.1 <> na Primary Assembly 80504 na SUPER_20_unloc_18 unlocalized-scaffold 20 Chromosome CFJLPB010000018.1 <> na Primary Assembly 78261 na SUPER_20_unloc_19 unlocalized-scaffold 20 Chromosome CFJLPB010000019.1 <> na Primary Assembly 77580 na SUPER_20_unloc_20 unlocalized-scaffold 20 Chromosome CFJLPB010000020.1 <> na Primary Assembly 75823 na SUPER_20_unloc_21 unlocalized-scaffold 20 Chromosome CFJLPB010000021.1 <> na Primary Assembly 73522 na SUPER_20_unloc_22 unlocalized-scaffold 20 Chromosome CFJLPB010000022.1 <> na Primary Assembly 72754 na SUPER_20_unloc_23 unlocalized-scaffold 20 Chromosome CFJLPB010000023.1 <> na Primary Assembly 69201 na SUPER_20_unloc_24 unlocalized-scaffold 20 Chromosome CFJLPB010000024.1 <> na Primary Assembly 68944 na SUPER_20_unloc_25 unlocalized-scaffold 20 Chromosome CFJLPB010000025.1 <> na Primary Assembly 66947 na SUPER_20_unloc_26 unlocalized-scaffold 20 Chromosome CFJLPB010000026.1 <> na Primary Assembly 65927 na SUPER_20_unloc_27 unlocalized-scaffold 20 Chromosome CFJLPB010000027.1 <> na Primary Assembly 65355 na SUPER_20_unloc_28 unlocalized-scaffold 20 Chromosome CFJLPB010000028.1 <> na Primary Assembly 64374 na SUPER_20_unloc_29 unlocalized-scaffold 20 Chromosome CFJLPB010000029.1 <> na Primary Assembly 60793 na SUPER_20_unloc_30 unlocalized-scaffold 20 Chromosome CFJLPB010000030.1 <> na Primary Assembly 60630 na SUPER_20_unloc_31 unlocalized-scaffold 20 Chromosome CFJLPB010000031.1 <> na Primary Assembly 59161 na SUPER_20_unloc_32 unlocalized-scaffold 20 Chromosome CFJLPB010000032.1 <> na Primary Assembly 58827 na SUPER_20_unloc_33 unlocalized-scaffold 20 Chromosome CFJLPB010000033.1 <> na Primary Assembly 58107 na SUPER_20_unloc_34 unlocalized-scaffold 20 Chromosome CFJLPB010000034.1 <> na Primary Assembly 58059 na SUPER_20_unloc_35 unlocalized-scaffold 20 Chromosome CFJLPB010000035.1 <> na Primary Assembly 56344 na SUPER_20_unloc_36 unlocalized-scaffold 20 Chromosome CFJLPB010000036.1 <> na Primary Assembly 55875 na SUPER_20_unloc_37 unlocalized-scaffold 20 Chromosome CFJLPB010000037.1 <> na Primary Assembly 50942 na SUPER_20_unloc_38 unlocalized-scaffold 20 Chromosome CFJLPB010000038.1 <> na Primary Assembly 50235 na SUPER_20_unloc_39 unlocalized-scaffold 20 Chromosome CFJLPB010000039.1 <> na Primary Assembly 47599 na SUPER_20_unloc_40 unlocalized-scaffold 20 Chromosome CFJLPB010000040.1 <> na Primary Assembly 45454 na SUPER_20_unloc_41 unlocalized-scaffold 20 Chromosome CFJLPB010000041.1 <> na Primary Assembly 44490 na SUPER_20_unloc_42 unlocalized-scaffold 20 Chromosome CFJLPB010000042.1 <> na Primary Assembly 44482 na SUPER_20_unloc_43 unlocalized-scaffold 20 Chromosome CFJLPB010000043.1 <> na Primary Assembly 41786 na SUPER_20_unloc_44 unlocalized-scaffold 20 Chromosome CFJLPB010000044.1 <> na Primary Assembly 41567 na SUPER_20_unloc_45 unlocalized-scaffold 20 Chromosome CFJLPB010000045.1 <> na Primary Assembly 40279 na SUPER_20_unloc_46 unlocalized-scaffold 20 Chromosome CFJLPB010000046.1 <> na Primary Assembly 39671 na SUPER_20_unloc_47 unlocalized-scaffold 20 Chromosome CFJLPB010000047.1 <> na Primary Assembly 39455 na SUPER_20_unloc_48 unlocalized-scaffold 20 Chromosome CFJLPB010000048.1 <> na Primary Assembly 38903 na SUPER_20_unloc_49 unlocalized-scaffold 20 Chromosome CFJLPB010000049.1 <> na Primary Assembly 38679 na SUPER_20_unloc_50 unlocalized-scaffold 20 Chromosome CFJLPB010000050.1 <> na Primary Assembly 38111 na SUPER_20_unloc_51 unlocalized-scaffold 20 Chromosome CFJLPB010000051.1 <> na Primary Assembly 37396 na SUPER_20_unloc_52 unlocalized-scaffold 20 Chromosome CFJLPB010000052.1 <> na Primary Assembly 36980 na SUPER_20_unloc_53 unlocalized-scaffold 20 Chromosome CFJLPB010000053.1 <> na Primary Assembly 36932 na SUPER_20_unloc_54 unlocalized-scaffold 20 Chromosome CFJLPB010000054.1 <> na Primary Assembly 36867 na SUPER_20_unloc_55 unlocalized-scaffold 20 Chromosome CFJLPB010000055.1 <> na Primary Assembly 36635 na SUPER_20_unloc_56 unlocalized-scaffold 20 Chromosome CFJLPB010000056.1 <> na Primary Assembly 36402 na SUPER_20_unloc_57 unlocalized-scaffold 20 Chromosome CFJLPB010000057.1 <> na Primary Assembly 35870 na SUPER_20_unloc_58 unlocalized-scaffold 20 Chromosome CFJLPB010000058.1 <> na Primary Assembly 35128 na SUPER_20_unloc_59 unlocalized-scaffold 20 Chromosome CFJLPB010000059.1 <> na Primary Assembly 34958 na SUPER_20_unloc_60 unlocalized-scaffold 20 Chromosome CFJLPB010000060.1 <> na Primary Assembly 33589 na SUPER_20_unloc_61 unlocalized-scaffold 20 Chromosome CFJLPB010000061.1 <> na Primary Assembly 33471 na SUPER_20_unloc_62 unlocalized-scaffold 20 Chromosome CFJLPB010000062.1 <> na Primary Assembly 32646 na SUPER_20_unloc_63 unlocalized-scaffold 20 Chromosome CFJLPB010000063.1 <> na Primary Assembly 30908 na SUPER_20_unloc_64 unlocalized-scaffold 20 Chromosome CFJLPB010000064.1 <> na Primary Assembly 29848 na SUPER_20_unloc_65 unlocalized-scaffold 20 Chromosome CFJLPB010000065.1 <> na Primary Assembly 29708 na SUPER_20_unloc_66 unlocalized-scaffold 20 Chromosome CFJLPB010000066.1 <> na Primary Assembly 27191 na SUPER_20_unloc_67 unlocalized-scaffold 20 Chromosome CFJLPB010000067.1 <> na Primary Assembly 25012 na SUPER_20_unloc_68 unlocalized-scaffold 20 Chromosome CFJLPB010000068.1 <> na Primary Assembly 24885 na SUPER_20_unloc_69 unlocalized-scaffold 20 Chromosome CFJLPB010000069.1 <> na Primary Assembly 20943 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CFJLPB010000070.1 <> na Primary Assembly 126019 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CFJLPB010000071.1 <> na Primary Assembly 114000 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CFJLPB010000072.1 <> na Primary Assembly 82726 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CFJLPB010000073.1 <> na Primary Assembly 81081 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CFJLPB010000074.1 <> na Primary Assembly 69000 na HAP1_SCAFFOLD_142 unplaced-scaffold na na CFJLPB010000075.1 <> na Primary Assembly 66872 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CFJLPB010000076.1 <> na Primary Assembly 63000 na HAP1_SCAFFOLD_157 unplaced-scaffold na na CFJLPB010000077.1 <> na Primary Assembly 62305 na HAP1_SCAFFOLD_219 unplaced-scaffold na na CFJLPB010000078.1 <> na Primary Assembly 49785 na HAP1_SCAFFOLD_227 unplaced-scaffold na na CFJLPB010000079.1 <> na Primary Assembly 48458 na HAP1_SCAFFOLD_241 unplaced-scaffold na na CFJLPB010000080.1 <> na Primary Assembly 46638 na HAP1_SCAFFOLD_268 unplaced-scaffold na na CFJLPB010000081.1 <> na Primary Assembly 44407 na HAP1_SCAFFOLD_289 unplaced-scaffold na na CFJLPB010000082.1 <> na Primary Assembly 42916 na HAP1_SCAFFOLD_294 unplaced-scaffold na na CFJLPB010000083.1 <> na Primary Assembly 42549 na HAP1_SCAFFOLD_395 unplaced-scaffold na na CFJLPB010000084.1 <> na Primary Assembly 36376 na HAP1_SCAFFOLD_399 unplaced-scaffold na na CFJLPB010000085.1 <> na Primary Assembly 36110 na HAP1_SCAFFOLD_449 unplaced-scaffold na na CFJLPB010000086.1 <> na Primary Assembly 33100 na HAP1_SCAFFOLD_540 unplaced-scaffold na na CFJLPB010000087.1 <> na Primary Assembly 28431 na HAP1_SCAFFOLD_658 unplaced-scaffold na na CFJLPB010000088.1 <> na Primary Assembly 22722 na HAP1_SCAFFOLD_734 unplaced-scaffold na na CFJLPB010000089.1 <> na Primary Assembly 18518 na HAP1_SCAFFOLD_782 unplaced-scaffold na na CFJLPB010000090.1 <> na Primary Assembly 15707 na HAP1_SCAFFOLD_816 unplaced-scaffold na na CFJLPB010000091.1 <> na Primary Assembly 13651 na HAP1_SCAFFOLD_868 unplaced-scaffold na na CFJLPB010000092.1 <> na Primary Assembly 2000 na HAP1_SCAFFOLD_872 unplaced-scaffold na na CFJLPB010000093.1 <> na Primary Assembly 1000 na HAP1_SCAFFOLD_877 unplaced-scaffold na na CFJLPB010000094.1 <> na Primary Assembly 1000 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ482210.1 <> na non-nuclear 787095 na scaffold_Pltd_1 assembled-molecule Pltd Chloroplast OZ482211.1 <> na non-nuclear 153068 na