# Assembly name: bAleRuf2.hap1.1 # Organism name: Alectoris rufa (red-legged partridge) # Taxid: 9079 # BioSample: SAMEA118680286 # BioProject: PRJEB122688 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-09-09 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CFWXLP01 # Assembly method: various # Genome coverage: 68x # Sequencing technology: Oxford Nanopore,Arima2 # GenBank assembly accession: GCA_987193675.1 # Linked assembly: GCA_987195205.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ497864.1 <> na Primary Assembly 198760773 na SUPER_2 assembled-molecule 2 Chromosome OZ497865.1 <> na Primary Assembly 150940804 na SUPER_3 assembled-molecule 3 Chromosome OZ497866.1 <> na Primary Assembly 112681289 na SUPER_4 assembled-molecule 4 Chromosome OZ497867.1 <> na Primary Assembly 95927540 na SUPER_5 assembled-molecule 5 Chromosome OZ497868.1 <> na Primary Assembly 61697810 na SUPER_6 assembled-molecule 6 Chromosome OZ497869.1 <> na Primary Assembly 40157000 na SUPER_7 assembled-molecule 7 Chromosome OZ497870.1 <> na Primary Assembly 36166000 na SUPER_8 assembled-molecule 8 Chromosome OZ497871.1 <> na Primary Assembly 31006940 na SUPER_9 assembled-molecule 9 Chromosome OZ497872.1 <> na Primary Assembly 25583577 na SUPER_10 assembled-molecule 10 Chromosome OZ497873.1 <> na Primary Assembly 22169000 na SUPER_11 assembled-molecule 11 Chromosome OZ497874.1 <> na Primary Assembly 20488800 na SUPER_12 assembled-molecule 12 Chromosome OZ497875.1 <> na Primary Assembly 19778000 na SUPER_13 assembled-molecule 13 Chromosome OZ497876.1 <> na Primary Assembly 19700000 na SUPER_14 assembled-molecule 14 Chromosome OZ497877.1 <> na Primary Assembly 16801724 na SUPER_15 assembled-molecule 15 Chromosome OZ497878.1 <> na Primary Assembly 14826266 na SUPER_16 assembled-molecule 16 Chromosome OZ497879.1 <> na Primary Assembly 13342142 na SUPER_17 assembled-molecule 17 Chromosome OZ497880.1 <> na Primary Assembly 12943684 na SUPER_18 assembled-molecule 18 Chromosome OZ497881.1 <> na Primary Assembly 11723178 na SUPER_19 assembled-molecule 19 Chromosome OZ497882.1 <> na Primary Assembly 11420604 na SUPER_20 assembled-molecule 20 Chromosome OZ497883.1 <> na Primary Assembly 7350565 na SUPER_21 assembled-molecule 21 Chromosome OZ497884.1 <> na Primary Assembly 6484539 na SUPER_22 assembled-molecule 22 Chromosome OZ497885.1 <> na Primary Assembly 6402991 na SUPER_23 assembled-molecule 23 Chromosome OZ497886.1 <> na Primary Assembly 6336237 na SUPER_24 assembled-molecule 24 Chromosome OZ497887.1 <> na Primary Assembly 5267000 na SUPER_25 assembled-molecule 25 Chromosome OZ497888.1 <> na Primary Assembly 5066161 na SUPER_26 assembled-molecule 26 Chromosome OZ497889.1 <> na Primary Assembly 4722248 na SUPER_27 assembled-molecule 27 Chromosome OZ497890.1 <> na Primary Assembly 4676481 na SUPER_28 assembled-molecule 28 Chromosome OZ497891.1 <> na Primary Assembly 4664127 na SUPER_29 assembled-molecule 29 Chromosome OZ497892.1 <> na Primary Assembly 4569000 na SUPER_30 assembled-molecule 30 Chromosome OZ497893.1 <> na Primary Assembly 4314066 na SUPER_31 assembled-molecule 31 Chromosome OZ497894.1 <> na Primary Assembly 4308000 na SUPER_32 assembled-molecule 32 Chromosome OZ497895.1 <> na Primary Assembly 4209522 na SUPER_33 assembled-molecule 33 Chromosome OZ497896.1 <> na Primary Assembly 4205426 na SUPER_34 assembled-molecule 34 Chromosome OZ497897.1 <> na Primary Assembly 4066114 na SUPER_35 assembled-molecule 35 Chromosome OZ497898.1 <> na Primary Assembly 3774000 na SUPER_36 assembled-molecule 36 Chromosome OZ497899.1 <> na Primary Assembly 3551700 na SUPER_37 assembled-molecule 37 Chromosome OZ497900.1 <> na Primary Assembly 3386327 na SUPER_38 assembled-molecule 38 Chromosome OZ497901.1 <> na Primary Assembly 2708000 na SUPER_Z assembled-molecule Z Chromosome OZ497902.1 <> na Primary Assembly 86066457 na HAP1_SCAFFOLD_39 unplaced-scaffold na na CFWXLP010000001.1 <> na Primary Assembly 2659000 na HAP1_SCAFFOLD_42 unplaced-scaffold na na CFWXLP010000002.1 <> na Primary Assembly 1373969 na HAP1_SCAFFOLD_44 unplaced-scaffold na na CFWXLP010000003.1 <> na Primary Assembly 1192871 na HAP1_SCAFFOLD_47 unplaced-scaffold na na CFWXLP010000004.1 <> na Primary Assembly 941053 na HAP1_SCAFFOLD_49 unplaced-scaffold na na CFWXLP010000005.1 <> na Primary Assembly 889000 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CFWXLP010000006.1 <> na Primary Assembly 871227 na HAP1_SCAFFOLD_51 unplaced-scaffold na na CFWXLP010000007.1 <> na Primary Assembly 845011 na HAP1_SCAFFOLD_52 unplaced-scaffold na na CFWXLP010000008.1 <> na Primary Assembly 844771 na HAP1_SCAFFOLD_53 unplaced-scaffold na na CFWXLP010000009.1 <> na Primary Assembly 747567 na HAP1_SCAFFOLD_54 unplaced-scaffold na na CFWXLP010000010.1 <> na Primary Assembly 700691 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CFWXLP010000011.1 <> na Primary Assembly 618367 na HAP1_SCAFFOLD_56 unplaced-scaffold na na CFWXLP010000012.1 <> na Primary Assembly 600929 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CFWXLP010000013.1 <> na Primary Assembly 552106 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CFWXLP010000014.1 <> na Primary Assembly 516000 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CFWXLP010000015.1 <> na Primary Assembly 487000 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CFWXLP010000016.1 <> na Primary Assembly 388444 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CFWXLP010000017.1 <> na Primary Assembly 344000 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CFWXLP010000018.1 <> na Primary Assembly 339000 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CFWXLP010000019.1 <> na Primary Assembly 337156 na HAP1_SCAFFOLD_68 unplaced-scaffold na na CFWXLP010000020.1 <> na Primary Assembly 234254 na HAP1_SCAFFOLD_69 unplaced-scaffold na na CFWXLP010000021.1 <> na Primary Assembly 215534 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CFWXLP010000022.1 <> na Primary Assembly 210118 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CFWXLP010000023.1 <> na Primary Assembly 181435 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CFWXLP010000024.1 <> na Primary Assembly 146323 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CFWXLP010000025.1 <> na Primary Assembly 92000 na HAP1_SCAFFOLD_76 unplaced-scaffold na na CFWXLP010000026.1 <> na Primary Assembly 85000 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CFWXLP010000027.1 <> na Primary Assembly 81492 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CFWXLP010000028.1 <> na Primary Assembly 79485 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CFWXLP010000029.1 <> na Primary Assembly 77207 na HAP1_SCAFFOLD_80 unplaced-scaffold na na CFWXLP010000030.1 <> na Primary Assembly 72442 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CFWXLP010000031.1 <> na Primary Assembly 71000 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CFWXLP010000032.1 <> na Primary Assembly 65662 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CFWXLP010000033.1 <> na Primary Assembly 62000 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CFWXLP010000034.1 <> na Primary Assembly 59000 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CFWXLP010000035.1 <> na Primary Assembly 57000 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CFWXLP010000036.1 <> na Primary Assembly 57000 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CFWXLP010000037.1 <> na Primary Assembly 54559 na HAP1_SCAFFOLD_88 unplaced-scaffold na na CFWXLP010000038.1 <> na Primary Assembly 54361 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CFWXLP010000039.1 <> na Primary Assembly 53628 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CFWXLP010000040.1 <> na Primary Assembly 52646 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CFWXLP010000041.1 <> na Primary Assembly 51000 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CFWXLP010000042.1 <> na Primary Assembly 51000 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CFWXLP010000043.1 <> na Primary Assembly 35549 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CFWXLP010000044.1 <> na Primary Assembly 31000 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CFWXLP010000045.1 <> na Primary Assembly 24250 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CFWXLP010000046.1 <> na Primary Assembly 14823 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CFWXLP010000047.1 <> na Primary Assembly 13571 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CFWXLP010000048.1 <> na Primary Assembly 13226 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CFWXLP010000049.1 <> na Primary Assembly 10917 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CFWXLP010000050.1 <> na Primary Assembly 10194 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CFWXLP010000051.1 <> na Primary Assembly 9383 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CFWXLP010000052.1 <> na Primary Assembly 8917 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CFWXLP010000053.1 <> na Primary Assembly 8676 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CFWXLP010000054.1 <> na Primary Assembly 8518 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CFWXLP010000055.1 <> na Primary Assembly 8152 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CFWXLP010000056.1 <> na Primary Assembly 7995 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CFWXLP010000057.1 <> na Primary Assembly 6780 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CFWXLP010000058.1 <> na Primary Assembly 6776 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CFWXLP010000059.1 <> na Primary Assembly 6212 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CFWXLP010000060.1 <> na Primary Assembly 6120 na HAP1_SCAFFOLD_111 unplaced-scaffold na na CFWXLP010000061.1 <> na Primary Assembly 5988 na HAP1_SCAFFOLD_112 unplaced-scaffold na na CFWXLP010000062.1 <> na Primary Assembly 5901 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CFWXLP010000063.1 <> na Primary Assembly 5872 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CFWXLP010000064.1 <> na Primary Assembly 5307 na HAP1_SCAFFOLD_115 unplaced-scaffold na na CFWXLP010000065.1 <> na Primary Assembly 4583 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CFWXLP010000066.1 <> na Primary Assembly 4260 na HAP1_SCAFFOLD_117 unplaced-scaffold na na CFWXLP010000067.1 <> na Primary Assembly 4027 na HAP1_SCAFFOLD_118 unplaced-scaffold na na CFWXLP010000068.1 <> na Primary Assembly 3989 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CFWXLP010000069.1 <> na Primary Assembly 3837 na HAP1_SCAFFOLD_120 unplaced-scaffold na na CFWXLP010000070.1 <> na Primary Assembly 3694 na HAP1_SCAFFOLD_121 unplaced-scaffold na na CFWXLP010000071.1 <> na Primary Assembly 3562 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CFWXLP010000072.1 <> na Primary Assembly 3536 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CFWXLP010000073.1 <> na Primary Assembly 3443 na HAP1_SCAFFOLD_124 unplaced-scaffold na na CFWXLP010000074.1 <> na Primary Assembly 3409 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CFWXLP010000075.1 <> na Primary Assembly 3262 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CFWXLP010000076.1 <> na Primary Assembly 3172 na HAP1_SCAFFOLD_127 unplaced-scaffold na na CFWXLP010000077.1 <> na Primary Assembly 2832 na HAP1_SCAFFOLD_128 unplaced-scaffold na na CFWXLP010000078.1 <> na Primary Assembly 2701 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CFWXLP010000079.1 <> na Primary Assembly 2691 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CFWXLP010000080.1 <> na Primary Assembly 2657 na HAP1_SCAFFOLD_131 unplaced-scaffold na na CFWXLP010000081.1 <> na Primary Assembly 2288 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CFWXLP010000082.1 <> na Primary Assembly 2197 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CFWXLP010000083.1 <> na Primary Assembly 2029 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CFWXLP010000084.1 <> na Primary Assembly 1962 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CFWXLP010000085.1 <> na Primary Assembly 1882 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CFWXLP010000086.1 <> na Primary Assembly 1872 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CFWXLP010000087.1 <> na Primary Assembly 1856 na HAP1_SCAFFOLD_138 unplaced-scaffold na na CFWXLP010000088.1 <> na Primary Assembly 1851 na HAP1_SCAFFOLD_139 unplaced-scaffold na na CFWXLP010000089.1 <> na Primary Assembly 1530 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ497903.1 <> na non-nuclear 16693 na