# Assembly name: bLinCan2.hap1.1 # Organism name: Linaria cannabina (Eurasian linnet) # Taxid: 160757 # BioSample: SAMEA118680283 # BioProject: PRJEB122725 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-09-08 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CFWXSI01 # Assembly method: various # Genome coverage: 71x # Sequencing technology: Oxford Nanopore,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_987195915.1 # Linked assembly: GCA_987197665.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1_HAP1 assembled-molecule 1 Chromosome OZ499118.1 <> na Primary Assembly 161226309 na SUPER_2_HAP1 assembled-molecule 2 Chromosome OZ499119.1 <> na Primary Assembly 126841071 na SUPER_3_HAP1 assembled-molecule 3 Chromosome OZ499120.1 <> na Primary Assembly 125519984 na SUPER_4_HAP1 assembled-molecule 4 Chromosome OZ499121.1 <> na Primary Assembly 75686932 na SUPER_5_HAP1 assembled-molecule 5 Chromosome OZ499122.1 <> na Primary Assembly 73534814 na SUPER_6_HAP1 assembled-molecule 6 Chromosome OZ499123.1 <> na Primary Assembly 66565976 na SUPER_7_HAP1 assembled-molecule 7 Chromosome OZ499124.1 <> na Primary Assembly 37028761 na SUPER_8_HAP1 assembled-molecule 8 Chromosome OZ499125.1 <> na Primary Assembly 32308679 na SUPER_9_HAP1 assembled-molecule 9 Chromosome OZ499126.1 <> na Primary Assembly 31547295 na SUPER_10_HAP1 assembled-molecule 10 Chromosome OZ499127.1 <> na Primary Assembly 26135977 na SUPER_11_HAP1 assembled-molecule 11 Chromosome OZ499128.1 <> na Primary Assembly 22664395 na SUPER_12_HAP1 assembled-molecule 12 Chromosome OZ499129.1 <> na Primary Assembly 22234251 na SUPER_13_HAP1 assembled-molecule 13 Chromosome OZ499130.1 <> na Primary Assembly 21067411 na SUPER_14_HAP1 assembled-molecule 14 Chromosome OZ499131.1 <> na Primary Assembly 19890677 na SUPER_15_HAP1 assembled-molecule 15 Chromosome OZ499132.1 <> na Primary Assembly 18516788 na SUPER_16_HAP1 assembled-molecule 16 Chromosome OZ499133.1 <> na Primary Assembly 17908659 na SUPER_17_HAP1 assembled-molecule 17 Chromosome OZ499134.1 <> na Primary Assembly 16706215 na SUPER_18_HAP1 assembled-molecule 18 Chromosome OZ499135.1 <> na Primary Assembly 15000097 na SUPER_19_HAP1 assembled-molecule 19 Chromosome OZ499136.1 <> na Primary Assembly 14092735 na SUPER_20_HAP1 assembled-molecule 20 Chromosome OZ499137.1 <> na Primary Assembly 12495775 na SUPER_21_HAP1 assembled-molecule 21 Chromosome OZ499138.1 <> na Primary Assembly 12476066 na SUPER_22_HAP1 assembled-molecule 22 Chromosome OZ499139.1 <> na Primary Assembly 12237301 na SUPER_23_HAP1 assembled-molecule 23 Chromosome OZ499140.1 <> na Primary Assembly 12225132 na SUPER_24_HAP1 assembled-molecule 24 Chromosome OZ499141.1 <> na Primary Assembly 12207012 na SUPER_25_HAP1 assembled-molecule 25 Chromosome OZ499142.1 <> na Primary Assembly 11944913 na SUPER_26_HAP1 assembled-molecule 26 Chromosome OZ499143.1 <> na Primary Assembly 11453948 na SUPER_27_HAP1 assembled-molecule 27 Chromosome OZ499144.1 <> na Primary Assembly 8499344 na SUPER_28_HAP1 assembled-molecule 28 Chromosome OZ499145.1 <> na Primary Assembly 8435360 na SUPER_29_HAP1 assembled-molecule 29 Chromosome OZ499146.1 <> na Primary Assembly 8305857 na SUPER_30_HAP1 assembled-molecule 30 Chromosome OZ499147.1 <> na Primary Assembly 7695001 na SUPER_31_HAP1 assembled-molecule 31 Chromosome OZ499148.1 <> na Primary Assembly 7669224 na SUPER_32_HAP1 assembled-molecule 32 Chromosome OZ499149.1 <> na Primary Assembly 7372301 na SUPER_33_HAP1 assembled-molecule 33 Chromosome OZ499150.1 <> na Primary Assembly 7366839 na SUPER_34_HAP1 assembled-molecule 34 Chromosome OZ499151.1 <> na Primary Assembly 7300413 na SUPER_35_HAP1 assembled-molecule 35 Chromosome OZ499152.1 <> na Primary Assembly 7031265 na SUPER_36_HAP1 assembled-molecule 36 Chromosome OZ499153.1 <> na Primary Assembly 6459713 na SUPER_37_HAP1 assembled-molecule 37 Chromosome OZ499154.1 <> na Primary Assembly 6086601 na SUPER_38_HAP1 assembled-molecule 38 Chromosome OZ499155.1 <> na Primary Assembly 5635944 na SUPER_39_HAP1 assembled-molecule 39 Chromosome OZ499156.1 <> na Primary Assembly 5055629 na SUPER_40_HAP1 assembled-molecule 40 Chromosome OZ499157.1 <> na Primary Assembly 5045375 na SUPER_W_HAP1 assembled-molecule W Chromosome OZ499158.1 <> na Primary Assembly 33498347 na SUPER_Z_HAP1 assembled-molecule Z Chromosome OZ499159.1 <> na Primary Assembly 93158120 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CFWXSI010000001.1 <> na Primary Assembly 407693 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CFWXSI010000002.1 <> na Primary Assembly 392744 na HAP1_SCAFFOLD_62 unplaced-scaffold na na CFWXSI010000003.1 <> na Primary Assembly 385208 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CFWXSI010000004.1 <> na Primary Assembly 350311 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CFWXSI010000005.1 <> na Primary Assembly 348355 na HAP1_SCAFFOLD_66 unplaced-scaffold na na CFWXSI010000006.1 <> na Primary Assembly 301278 na HAP1_SCAFFOLD_67 unplaced-scaffold na na CFWXSI010000007.1 <> na Primary Assembly 295483 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CFWXSI010000008.1 <> na Primary Assembly 275770 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CFWXSI010000009.1 <> na Primary Assembly 272652 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CFWXSI010000010.1 <> na Primary Assembly 269832 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CFWXSI010000011.1 <> na Primary Assembly 251144 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CFWXSI010000012.1 <> na Primary Assembly 244757 na HAP1_SCAFFOLD_76 unplaced-scaffold na na CFWXSI010000013.1 <> na Primary Assembly 242783 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CFWXSI010000014.1 <> na Primary Assembly 235643 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CFWXSI010000015.1 <> na Primary Assembly 220580 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CFWXSI010000016.1 <> na Primary Assembly 219902 na HAP1_SCAFFOLD_80 unplaced-scaffold na na CFWXSI010000017.1 <> na Primary Assembly 217698 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CFWXSI010000018.1 <> na Primary Assembly 214268 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CFWXSI010000019.1 <> na Primary Assembly 211501 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CFWXSI010000020.1 <> na Primary Assembly 203848 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CFWXSI010000021.1 <> na Primary Assembly 197019 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CFWXSI010000022.1 <> na Primary Assembly 196302 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CFWXSI010000023.1 <> na Primary Assembly 194635 na HAP1_SCAFFOLD_88 unplaced-scaffold na na CFWXSI010000024.1 <> na Primary Assembly 189499 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CFWXSI010000025.1 <> na Primary Assembly 185894 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CFWXSI010000026.1 <> na Primary Assembly 185744 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CFWXSI010000027.1 <> na Primary Assembly 181354 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CFWXSI010000028.1 <> na Primary Assembly 177661 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CFWXSI010000029.1 <> na Primary Assembly 172012 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CFWXSI010000030.1 <> na Primary Assembly 160908 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CFWXSI010000031.1 <> na Primary Assembly 159033 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CFWXSI010000032.1 <> na Primary Assembly 154112 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CFWXSI010000033.1 <> na Primary Assembly 153304 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CFWXSI010000034.1 <> na Primary Assembly 152010 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CFWXSI010000035.1 <> na Primary Assembly 151489 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CFWXSI010000036.1 <> na Primary Assembly 151211 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CFWXSI010000037.1 <> na Primary Assembly 145324 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CFWXSI010000038.1 <> na Primary Assembly 143687 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CFWXSI010000039.1 <> na Primary Assembly 143178 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CFWXSI010000040.1 <> na Primary Assembly 124850 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CFWXSI010000041.1 <> na Primary Assembly 120580 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CFWXSI010000042.1 <> na Primary Assembly 120430 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CFWXSI010000043.1 <> na Primary Assembly 119453 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CFWXSI010000044.1 <> na Primary Assembly 118484 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CFWXSI010000045.1 <> na Primary Assembly 116983 na HAP1_SCAFFOLD_111 unplaced-scaffold na na CFWXSI010000046.1 <> na Primary Assembly 115949 na HAP1_SCAFFOLD_112 unplaced-scaffold na na CFWXSI010000047.1 <> na Primary Assembly 114522 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CFWXSI010000048.1 <> na Primary Assembly 112125 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CFWXSI010000049.1 <> na Primary Assembly 108027 na HAP1_SCAFFOLD_115 unplaced-scaffold na na CFWXSI010000050.1 <> na Primary Assembly 105905 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CFWXSI010000051.1 <> na Primary Assembly 97702 na HAP1_SCAFFOLD_118 unplaced-scaffold na na CFWXSI010000052.1 <> na Primary Assembly 94368 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CFWXSI010000053.1 <> na Primary Assembly 90948 na HAP1_SCAFFOLD_120 unplaced-scaffold na na CFWXSI010000054.1 <> na Primary Assembly 89070 na HAP1_SCAFFOLD_121 unplaced-scaffold na na CFWXSI010000055.1 <> na Primary Assembly 88850 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CFWXSI010000056.1 <> na Primary Assembly 88682 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CFWXSI010000057.1 <> na Primary Assembly 87610 na HAP1_SCAFFOLD_124 unplaced-scaffold na na CFWXSI010000058.1 <> na Primary Assembly 84776 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CFWXSI010000059.1 <> na Primary Assembly 84462 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CFWXSI010000060.1 <> na Primary Assembly 80799 na HAP1_SCAFFOLD_127 unplaced-scaffold na na CFWXSI010000061.1 <> na Primary Assembly 76617 na HAP1_SCAFFOLD_128 unplaced-scaffold na na CFWXSI010000062.1 <> na Primary Assembly 74670 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CFWXSI010000063.1 <> na Primary Assembly 71863 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CFWXSI010000064.1 <> na Primary Assembly 67688 na HAP1_SCAFFOLD_131 unplaced-scaffold na na CFWXSI010000065.1 <> na Primary Assembly 66643 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CFWXSI010000066.1 <> na Primary Assembly 66147 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CFWXSI010000067.1 <> na Primary Assembly 65312 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CFWXSI010000068.1 <> na Primary Assembly 63447 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CFWXSI010000069.1 <> na Primary Assembly 63401 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CFWXSI010000070.1 <> na Primary Assembly 61692 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CFWXSI010000071.1 <> na Primary Assembly 61160 na HAP1_SCAFFOLD_138 unplaced-scaffold na na CFWXSI010000072.1 <> na Primary Assembly 60925 na HAP1_SCAFFOLD_139 unplaced-scaffold na na CFWXSI010000073.1 <> na Primary Assembly 54744 na HAP1_SCAFFOLD_140 unplaced-scaffold na na CFWXSI010000074.1 <> na Primary Assembly 53618 na HAP1_SCAFFOLD_141 unplaced-scaffold na na CFWXSI010000075.1 <> na Primary Assembly 52669 na HAP1_SCAFFOLD_142 unplaced-scaffold na na CFWXSI010000076.1 <> na Primary Assembly 51042 na HAP1_SCAFFOLD_143 unplaced-scaffold na na CFWXSI010000077.1 <> na Primary Assembly 48144 na HAP1_SCAFFOLD_144 unplaced-scaffold na na CFWXSI010000078.1 <> na Primary Assembly 47367 na HAP1_SCAFFOLD_145 unplaced-scaffold na na CFWXSI010000079.1 <> na Primary Assembly 44861 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CFWXSI010000080.1 <> na Primary Assembly 44428 na HAP1_SCAFFOLD_147 unplaced-scaffold na na CFWXSI010000081.1 <> na Primary Assembly 41437 na HAP1_SCAFFOLD_148 unplaced-scaffold na na CFWXSI010000082.1 <> na Primary Assembly 40697 na HAP1_SCAFFOLD_149 unplaced-scaffold na na CFWXSI010000083.1 <> na Primary Assembly 36864 na HAP1_SCAFFOLD_150 unplaced-scaffold na na CFWXSI010000084.1 <> na Primary Assembly 36713 na HAP1_SCAFFOLD_151 unplaced-scaffold na na CFWXSI010000085.1 <> na Primary Assembly 36216 na HAP1_SCAFFOLD_152 unplaced-scaffold na na CFWXSI010000086.1 <> na Primary Assembly 35005 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CFWXSI010000087.1 <> na Primary Assembly 34904 na HAP1_SCAFFOLD_154 unplaced-scaffold na na CFWXSI010000088.1 <> na Primary Assembly 34139 na HAP1_SCAFFOLD_155 unplaced-scaffold na na CFWXSI010000089.1 <> na Primary Assembly 31223 na HAP1_SCAFFOLD_156 unplaced-scaffold na na CFWXSI010000090.1 <> na Primary Assembly 30306 na HAP1_SCAFFOLD_157 unplaced-scaffold na na CFWXSI010000091.1 <> na Primary Assembly 29891 na HAP1_SCAFFOLD_158 unplaced-scaffold na na CFWXSI010000092.1 <> na Primary Assembly 27855 na HAP1_SCAFFOLD_159 unplaced-scaffold na na CFWXSI010000093.1 <> na Primary Assembly 27746 na HAP1_SCAFFOLD_160 unplaced-scaffold na na CFWXSI010000094.1 <> na Primary Assembly 27111 na HAP1_SCAFFOLD_161 unplaced-scaffold na na CFWXSI010000095.1 <> na Primary Assembly 26395 na HAP1_SCAFFOLD_162 unplaced-scaffold na na CFWXSI010000096.1 <> na Primary Assembly 26280 na HAP1_SCAFFOLD_163 unplaced-scaffold na na CFWXSI010000097.1 <> na Primary Assembly 24418 na HAP1_SCAFFOLD_164 unplaced-scaffold na na CFWXSI010000098.1 <> na Primary Assembly 23764 na HAP1_SCAFFOLD_165 unplaced-scaffold na na CFWXSI010000099.1 <> na Primary Assembly 22050 na HAP1_SCAFFOLD_166 unplaced-scaffold na na CFWXSI010000100.1 <> na Primary Assembly 20969 na HAP1_SCAFFOLD_167 unplaced-scaffold na na CFWXSI010000101.1 <> na Primary Assembly 20846 na HAP1_SCAFFOLD_168 unplaced-scaffold na na CFWXSI010000102.1 <> na Primary Assembly 19161 na HAP1_SCAFFOLD_169 unplaced-scaffold na na CFWXSI010000103.1 <> na Primary Assembly 18971 na HAP1_SCAFFOLD_170 unplaced-scaffold na na CFWXSI010000104.1 <> na Primary Assembly 17505 na HAP1_SCAFFOLD_171 unplaced-scaffold na na CFWXSI010000105.1 <> na Primary Assembly 16339 na HAP1_SCAFFOLD_172 unplaced-scaffold na na CFWXSI010000106.1 <> na Primary Assembly 16116 na HAP1_SCAFFOLD_173 unplaced-scaffold na na CFWXSI010000107.1 <> na Primary Assembly 15825 na HAP1_SCAFFOLD_174 unplaced-scaffold na na CFWXSI010000108.1 <> na Primary Assembly 11912 na HAP1_SCAFFOLD_175 unplaced-scaffold na na CFWXSI010000109.1 <> na Primary Assembly 11317 na HAP1_SCAFFOLD_176 unplaced-scaffold na na CFWXSI010000110.1 <> na Primary Assembly 11000 na HAP1_SCAFFOLD_177 unplaced-scaffold na na CFWXSI010000111.1 <> na Primary Assembly 7762 na HAP1_SCAFFOLD_178 unplaced-scaffold na na CFWXSI010000112.1 <> na Primary Assembly 6824 na HAP1_SCAFFOLD_179 unplaced-scaffold na na CFWXSI010000113.1 <> na Primary Assembly 6793 na HAP1_SCAFFOLD_180 unplaced-scaffold na na CFWXSI010000114.1 <> na Primary Assembly 6714 na HAP1_SCAFFOLD_181 unplaced-scaffold na na CFWXSI010000115.1 <> na Primary Assembly 6708 na HAP1_SCAFFOLD_182 unplaced-scaffold na na CFWXSI010000116.1 <> na Primary Assembly 6515 na HAP1_SCAFFOLD_183 unplaced-scaffold na na CFWXSI010000117.1 <> na Primary Assembly 6154 na HAP1_SCAFFOLD_184 unplaced-scaffold na na CFWXSI010000118.1 <> na Primary Assembly 6113 na HAP1_SCAFFOLD_185 unplaced-scaffold na na CFWXSI010000119.1 <> na Primary Assembly 5834 na HAP1_SCAFFOLD_186 unplaced-scaffold na na CFWXSI010000120.1 <> na Primary Assembly 5467 na HAP1_SCAFFOLD_187 unplaced-scaffold na na CFWXSI010000121.1 <> na Primary Assembly 5438 na HAP1_SCAFFOLD_188 unplaced-scaffold na na CFWXSI010000122.1 <> na Primary Assembly 5114 na HAP1_SCAFFOLD_189 unplaced-scaffold na na CFWXSI010000123.1 <> na Primary Assembly 5037 na HAP1_SCAFFOLD_190 unplaced-scaffold na na CFWXSI010000124.1 <> na Primary Assembly 4527 na HAP1_SCAFFOLD_191 unplaced-scaffold na na CFWXSI010000125.1 <> na Primary Assembly 4317 na HAP1_SCAFFOLD_192 unplaced-scaffold na na CFWXSI010000126.1 <> na Primary Assembly 3665 na HAP1_SCAFFOLD_193 unplaced-scaffold na na CFWXSI010000127.1 <> na Primary Assembly 3658 na HAP1_SCAFFOLD_194 unplaced-scaffold na na CFWXSI010000128.1 <> na Primary Assembly 3531 na HAP1_SCAFFOLD_195 unplaced-scaffold na na CFWXSI010000129.1 <> na Primary Assembly 2858 na HAP1_SCAFFOLD_196 unplaced-scaffold na na CFWXSI010000130.1 <> na Primary Assembly 2703 na HAP1_SCAFFOLD_197 unplaced-scaffold na na CFWXSI010000131.1 <> na Primary Assembly 2427 na HAP1_SCAFFOLD_198 unplaced-scaffold na na CFWXSI010000132.1 <> na Primary Assembly 2370 na HAP1_SCAFFOLD_199 unplaced-scaffold na na CFWXSI010000133.1 <> na Primary Assembly 2017 na HAP1_SCAFFOLD_200 unplaced-scaffold na na CFWXSI010000134.1 <> na Primary Assembly 2016 na HAP1_SCAFFOLD_201 unplaced-scaffold na na CFWXSI010000135.1 <> na Primary Assembly 1747 na HAP1_SCAFFOLD_202 unplaced-scaffold na na CFWXSI010000136.1 <> na Primary Assembly 1457 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ499160.1 <> na non-nuclear 16816 na