# Assembly name: bTroTro1.hap1.1 # Organism name: Troglodytes troglodytes (Eurasian wren) # Taxid: 36278 # BioSample: SAMEA117632810 # BioProject: PRJEB122758 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-09-08 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CFWXSW01 # Assembly method: various # Genome coverage: 67x # Sequencing technology: Oxford Nanopore,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_987195935.1 # Linked assembly: GCA_987196855.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ499262.1 <> na Primary Assembly 154018334 na SUPER_2 assembled-molecule 2 Chromosome OZ499263.1 <> na Primary Assembly 117145255 na SUPER_3 assembled-molecule 3 Chromosome OZ499264.1 <> na Primary Assembly 115867568 na SUPER_4 assembled-molecule 4 Chromosome OZ499265.1 <> na Primary Assembly 81197285 na SUPER_5 assembled-molecule 5 Chromosome OZ499266.1 <> na Primary Assembly 76236200 na SUPER_6 assembled-molecule 6 Chromosome OZ499267.1 <> na Primary Assembly 66272659 na SUPER_7 assembled-molecule 7 Chromosome OZ499268.1 <> na Primary Assembly 45943200 na SUPER_8 assembled-molecule 8 Chromosome OZ499269.1 <> na Primary Assembly 40800499 na SUPER_9 assembled-molecule 9 Chromosome OZ499270.1 <> na Primary Assembly 27690480 na SUPER_10 assembled-molecule 10 Chromosome OZ499271.1 <> na Primary Assembly 26554000 na SUPER_11 assembled-molecule 11 Chromosome OZ499272.1 <> na Primary Assembly 24371299 na SUPER_12 assembled-molecule 12 Chromosome OZ499273.1 <> na Primary Assembly 23367295 na SUPER_13 assembled-molecule 13 Chromosome OZ499274.1 <> na Primary Assembly 21553667 na SUPER_14 assembled-molecule 14 Chromosome OZ499275.1 <> na Primary Assembly 19999209 na SUPER_15 assembled-molecule 15 Chromosome OZ499276.1 <> na Primary Assembly 18862182 na SUPER_16 assembled-molecule 16 Chromosome OZ499277.1 <> na Primary Assembly 18515670 na SUPER_17 assembled-molecule 17 Chromosome OZ499278.1 <> na Primary Assembly 15568004 na SUPER_18 assembled-molecule 18 Chromosome OZ499279.1 <> na Primary Assembly 15050051 na SUPER_19 assembled-molecule 19 Chromosome OZ499280.1 <> na Primary Assembly 13041823 na SUPER_20 assembled-molecule 20 Chromosome OZ499281.1 <> na Primary Assembly 12595577 na SUPER_21 assembled-molecule 21 Chromosome OZ499282.1 <> na Primary Assembly 12265291 na SUPER_22 assembled-molecule 22 Chromosome OZ499283.1 <> na Primary Assembly 11219907 na SUPER_23 assembled-molecule 23 Chromosome OZ499284.1 <> na Primary Assembly 10590000 na SUPER_24 assembled-molecule 24 Chromosome OZ499285.1 <> na Primary Assembly 10534000 na SUPER_25 assembled-molecule 25 Chromosome OZ499286.1 <> na Primary Assembly 10279192 na SUPER_26 assembled-molecule 26 Chromosome OZ499287.1 <> na Primary Assembly 9793233 na SUPER_27 assembled-molecule 27 Chromosome OZ499288.1 <> na Primary Assembly 9641056 na SUPER_28 assembled-molecule 28 Chromosome OZ499289.1 <> na Primary Assembly 8718255 na SUPER_29 assembled-molecule 29 Chromosome OZ499290.1 <> na Primary Assembly 8615195 na SUPER_30 assembled-molecule 30 Chromosome OZ499291.1 <> na Primary Assembly 8591000 na SUPER_31 assembled-molecule 31 Chromosome OZ499292.1 <> na Primary Assembly 7748713 na SUPER_32 assembled-molecule 32 Chromosome OZ499293.1 <> na Primary Assembly 7725278 na SUPER_33 assembled-molecule 33 Chromosome OZ499294.1 <> na Primary Assembly 7561201 na SUPER_34 assembled-molecule 34 Chromosome OZ499295.1 <> na Primary Assembly 7406974 na SUPER_35 assembled-molecule 35 Chromosome OZ499296.1 <> na Primary Assembly 7190974 na SUPER_36 assembled-molecule 36 Chromosome OZ499297.1 <> na Primary Assembly 6359856 na SUPER_37 assembled-molecule 37 Chromosome OZ499298.1 <> na Primary Assembly 4913136 na SUPER_38 assembled-molecule 38 Chromosome OZ499299.1 <> na Primary Assembly 4296880 na SUPER_39 assembled-molecule 39 Chromosome OZ499300.1 <> na Primary Assembly 4197968 na SUPER_40 assembled-molecule 40 Chromosome OZ499301.1 <> na Primary Assembly 3102000 na SUPER_W assembled-molecule W Chromosome OZ499302.1 <> na Primary Assembly 47018415 na SUPER_Z assembled-molecule Z Chromosome OZ499303.1 <> na Primary Assembly 111053117 na HAP1_SCAFFOLD_45 unplaced-scaffold na na CFWXSW010000001.1 <> na Primary Assembly 3125000 na HAP1_SCAFFOLD_47 unplaced-scaffold na na CFWXSW010000002.1 <> na Primary Assembly 2533313 na HAP1_SCAFFOLD_48 unplaced-scaffold na na CFWXSW010000003.1 <> na Primary Assembly 2192000 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CFWXSW010000004.1 <> na Primary Assembly 2050976 na HAP1_SCAFFOLD_51 unplaced-scaffold na na CFWXSW010000005.1 <> na Primary Assembly 2035000 na HAP1_SCAFFOLD_52 unplaced-scaffold na na CFWXSW010000006.1 <> na Primary Assembly 2025000 na HAP1_SCAFFOLD_53 unplaced-scaffold na na CFWXSW010000007.1 <> na Primary Assembly 1797000 na HAP1_SCAFFOLD_54 unplaced-scaffold na na CFWXSW010000008.1 <> na Primary Assembly 1729077 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CFWXSW010000009.1 <> na Primary Assembly 1438963 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CFWXSW010000010.1 <> na Primary Assembly 965000 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CFWXSW010000011.1 <> na Primary Assembly 918000 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CFWXSW010000012.1 <> na Primary Assembly 787930 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CFWXSW010000013.1 <> na Primary Assembly 659000 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CFWXSW010000014.1 <> na Primary Assembly 632000 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CFWXSW010000015.1 <> na Primary Assembly 562614 na HAP1_SCAFFOLD_68 unplaced-scaffold na na CFWXSW010000016.1 <> na Primary Assembly 412552 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CFWXSW010000017.1 <> na Primary Assembly 391043 na HAP1_SCAFFOLD_71 unplaced-scaffold na na CFWXSW010000018.1 <> na Primary Assembly 362000 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CFWXSW010000019.1 <> na Primary Assembly 351938 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CFWXSW010000020.1 <> na Primary Assembly 328000 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CFWXSW010000021.1 <> na Primary Assembly 312810 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CFWXSW010000022.1 <> na Primary Assembly 276000 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CFWXSW010000023.1 <> na Primary Assembly 271000 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CFWXSW010000024.1 <> na Primary Assembly 264000 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CFWXSW010000025.1 <> na Primary Assembly 246200 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CFWXSW010000026.1 <> na Primary Assembly 232000 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CFWXSW010000027.1 <> na Primary Assembly 222000 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CFWXSW010000028.1 <> na Primary Assembly 211004 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CFWXSW010000029.1 <> na Primary Assembly 203673 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CFWXSW010000030.1 <> na Primary Assembly 184941 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CFWXSW010000031.1 <> na Primary Assembly 182022 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CFWXSW010000032.1 <> na Primary Assembly 180000 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CFWXSW010000033.1 <> na Primary Assembly 180000 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CFWXSW010000034.1 <> na Primary Assembly 174000 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CFWXSW010000035.1 <> na Primary Assembly 173758 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CFWXSW010000036.1 <> na Primary Assembly 173654 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CFWXSW010000037.1 <> na Primary Assembly 170165 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CFWXSW010000038.1 <> na Primary Assembly 169495 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CFWXSW010000039.1 <> na Primary Assembly 166000 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CFWXSW010000040.1 <> na Primary Assembly 163000 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CFWXSW010000041.1 <> na Primary Assembly 156850 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CFWXSW010000042.1 <> na Primary Assembly 155298 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CFWXSW010000043.1 <> na Primary Assembly 155000 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CFWXSW010000044.1 <> na Primary Assembly 154000 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CFWXSW010000045.1 <> na Primary Assembly 154000 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CFWXSW010000046.1 <> na Primary Assembly 153000 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CFWXSW010000047.1 <> na Primary Assembly 150143 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CFWXSW010000048.1 <> na Primary Assembly 145000 na HAP1_SCAFFOLD_111 unplaced-scaffold na na CFWXSW010000049.1 <> na Primary Assembly 143000 na HAP1_SCAFFOLD_112 unplaced-scaffold na na CFWXSW010000050.1 <> na Primary Assembly 138000 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CFWXSW010000051.1 <> na Primary Assembly 133000 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CFWXSW010000052.1 <> na Primary Assembly 132739 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CFWXSW010000053.1 <> na Primary Assembly 120078 na HAP1_SCAFFOLD_120 unplaced-scaffold na na CFWXSW010000054.1 <> na Primary Assembly 117224 na HAP1_SCAFFOLD_121 unplaced-scaffold na na CFWXSW010000055.1 <> na Primary Assembly 114000 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CFWXSW010000056.1 <> na Primary Assembly 111936 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CFWXSW010000057.1 <> na Primary Assembly 111000 na HAP1_SCAFFOLD_124 unplaced-scaffold na na CFWXSW010000058.1 <> na Primary Assembly 110930 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CFWXSW010000059.1 <> na Primary Assembly 110276 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CFWXSW010000060.1 <> na Primary Assembly 110000 na HAP1_SCAFFOLD_127 unplaced-scaffold na na CFWXSW010000061.1 <> na Primary Assembly 110000 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CFWXSW010000062.1 <> na Primary Assembly 108000 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CFWXSW010000063.1 <> na Primary Assembly 107000 na HAP1_SCAFFOLD_131 unplaced-scaffold na na CFWXSW010000064.1 <> na Primary Assembly 103717 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CFWXSW010000065.1 <> na Primary Assembly 101605 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CFWXSW010000066.1 <> na Primary Assembly 94000 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CFWXSW010000067.1 <> na Primary Assembly 91000 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CFWXSW010000068.1 <> na Primary Assembly 89000 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CFWXSW010000069.1 <> na Primary Assembly 89000 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CFWXSW010000070.1 <> na Primary Assembly 87616 na HAP1_SCAFFOLD_138 unplaced-scaffold na na CFWXSW010000071.1 <> na Primary Assembly 86935 na HAP1_SCAFFOLD_139 unplaced-scaffold na na CFWXSW010000072.1 <> na Primary Assembly 84730 na HAP1_SCAFFOLD_140 unplaced-scaffold na na CFWXSW010000073.1 <> na Primary Assembly 84249 na HAP1_SCAFFOLD_141 unplaced-scaffold na na CFWXSW010000074.1 <> na Primary Assembly 84000 na HAP1_SCAFFOLD_142 unplaced-scaffold na na CFWXSW010000075.1 <> na Primary Assembly 83000 na HAP1_SCAFFOLD_143 unplaced-scaffold na na CFWXSW010000076.1 <> na Primary Assembly 82000 na HAP1_SCAFFOLD_144 unplaced-scaffold na na CFWXSW010000077.1 <> na Primary Assembly 81649 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CFWXSW010000078.1 <> na Primary Assembly 80972 na HAP1_SCAFFOLD_147 unplaced-scaffold na na CFWXSW010000079.1 <> na Primary Assembly 80000 na HAP1_SCAFFOLD_148 unplaced-scaffold na na CFWXSW010000080.1 <> na Primary Assembly 80000 na HAP1_SCAFFOLD_149 unplaced-scaffold na na CFWXSW010000081.1 <> na Primary Assembly 79000 na HAP1_SCAFFOLD_150 unplaced-scaffold na na CFWXSW010000082.1 <> na Primary Assembly 78398 na HAP1_SCAFFOLD_151 unplaced-scaffold na na CFWXSW010000083.1 <> na Primary Assembly 76000 na HAP1_SCAFFOLD_152 unplaced-scaffold na na CFWXSW010000084.1 <> na Primary Assembly 76000 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CFWXSW010000085.1 <> na Primary Assembly 74982 na HAP1_SCAFFOLD_154 unplaced-scaffold na na CFWXSW010000086.1 <> na Primary Assembly 73252 na HAP1_SCAFFOLD_155 unplaced-scaffold na na CFWXSW010000087.1 <> na Primary Assembly 73000 na HAP1_SCAFFOLD_156 unplaced-scaffold na na CFWXSW010000088.1 <> na Primary Assembly 72173 na HAP1_SCAFFOLD_157 unplaced-scaffold na na CFWXSW010000089.1 <> na Primary Assembly 72000 na HAP1_SCAFFOLD_158 unplaced-scaffold na na CFWXSW010000090.1 <> na Primary Assembly 71745 na HAP1_SCAFFOLD_159 unplaced-scaffold na na CFWXSW010000091.1 <> na Primary Assembly 70532 na HAP1_SCAFFOLD_160 unplaced-scaffold na na CFWXSW010000092.1 <> na Primary Assembly 69000 na HAP1_SCAFFOLD_161 unplaced-scaffold na na CFWXSW010000093.1 <> na Primary Assembly 66862 na HAP1_SCAFFOLD_162 unplaced-scaffold na na CFWXSW010000094.1 <> na Primary Assembly 66508 na HAP1_SCAFFOLD_163 unplaced-scaffold na na CFWXSW010000095.1 <> na Primary Assembly 66000 na HAP1_SCAFFOLD_164 unplaced-scaffold na na CFWXSW010000096.1 <> na Primary Assembly 65000 na HAP1_SCAFFOLD_165 unplaced-scaffold na na CFWXSW010000097.1 <> na Primary Assembly 64108 na HAP1_SCAFFOLD_166 unplaced-scaffold na na CFWXSW010000098.1 <> na Primary Assembly 64000 na HAP1_SCAFFOLD_167 unplaced-scaffold na na CFWXSW010000099.1 <> na Primary Assembly 63000 na HAP1_SCAFFOLD_168 unplaced-scaffold na na CFWXSW010000100.1 <> na Primary Assembly 62581 na HAP1_SCAFFOLD_169 unplaced-scaffold na na CFWXSW010000101.1 <> na Primary Assembly 61000 na HAP1_SCAFFOLD_170 unplaced-scaffold na na CFWXSW010000102.1 <> na Primary Assembly 60175 na HAP1_SCAFFOLD_171 unplaced-scaffold na na CFWXSW010000103.1 <> na Primary Assembly 58000 na HAP1_SCAFFOLD_172 unplaced-scaffold na na CFWXSW010000104.1 <> na Primary Assembly 55367 na HAP1_SCAFFOLD_173 unplaced-scaffold na na CFWXSW010000105.1 <> na Primary Assembly 54569 na HAP1_SCAFFOLD_174 unplaced-scaffold na na CFWXSW010000106.1 <> na Primary Assembly 53125 na HAP1_SCAFFOLD_175 unplaced-scaffold na na CFWXSW010000107.1 <> na Primary Assembly 52000 na HAP1_SCAFFOLD_176 unplaced-scaffold na na CFWXSW010000108.1 <> na Primary Assembly 52000 na HAP1_SCAFFOLD_177 unplaced-scaffold na na CFWXSW010000109.1 <> na Primary Assembly 51432 na HAP1_SCAFFOLD_178 unplaced-scaffold na na CFWXSW010000110.1 <> na Primary Assembly 51000 na HAP1_SCAFFOLD_179 unplaced-scaffold na na CFWXSW010000111.1 <> na Primary Assembly 50975 na HAP1_SCAFFOLD_180 unplaced-scaffold na na CFWXSW010000112.1 <> na Primary Assembly 46406 na HAP1_SCAFFOLD_181 unplaced-scaffold na na CFWXSW010000113.1 <> na Primary Assembly 42348 na HAP1_SCAFFOLD_182 unplaced-scaffold na na CFWXSW010000114.1 <> na Primary Assembly 41723 na HAP1_SCAFFOLD_183 unplaced-scaffold na na CFWXSW010000115.1 <> na Primary Assembly 40000 na HAP1_SCAFFOLD_184 unplaced-scaffold na na CFWXSW010000116.1 <> na Primary Assembly 37733 na HAP1_SCAFFOLD_185 unplaced-scaffold na na CFWXSW010000117.1 <> na Primary Assembly 36325 na HAP1_SCAFFOLD_186 unplaced-scaffold na na CFWXSW010000118.1 <> na Primary Assembly 36000 na HAP1_SCAFFOLD_187 unplaced-scaffold na na CFWXSW010000119.1 <> na Primary Assembly 34216 na HAP1_SCAFFOLD_188 unplaced-scaffold na na CFWXSW010000120.1 <> na Primary Assembly 34000 na HAP1_SCAFFOLD_190 unplaced-scaffold na na CFWXSW010000121.1 <> na Primary Assembly 30000 na HAP1_SCAFFOLD_191 unplaced-scaffold na na CFWXSW010000122.1 <> na Primary Assembly 27756 na HAP1_SCAFFOLD_192 unplaced-scaffold na na CFWXSW010000123.1 <> na Primary Assembly 26000 na HAP1_SCAFFOLD_193 unplaced-scaffold na na CFWXSW010000124.1 <> na Primary Assembly 24000 na HAP1_SCAFFOLD_194 unplaced-scaffold na na CFWXSW010000125.1 <> na Primary Assembly 23000 na HAP1_SCAFFOLD_195 unplaced-scaffold na na CFWXSW010000126.1 <> na Primary Assembly 22000 na HAP1_SCAFFOLD_196 unplaced-scaffold na na CFWXSW010000127.1 <> na Primary Assembly 21000 na HAP1_SCAFFOLD_197 unplaced-scaffold na na CFWXSW010000128.1 <> na Primary Assembly 17163 na HAP1_SCAFFOLD_198 unplaced-scaffold na na CFWXSW010000129.1 <> na Primary Assembly 10744 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ499304.1 <> na non-nuclear 16796 na