# Assembly name:  bGarGla1.hap1.1
# Organism name:  Garrulus glandarius (Eurasian jay)
# Taxid:          56783
# BioSample:      SAMEA118680280
# BioProject:     PRJEB122720
# Submitter:      WELLCOME SANGER INSTITUTE
# Date:           2026-09-08
# Assembly type:  haploid (haplotype 1)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    CFWXTM01
# Assembly method: various
# Genome coverage: 65x
# Sequencing technology: Oxford Nanopore,Arima2
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_987195975.1
# Linked assembly: GCA_987197675.1 (haplotype 2)
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1_HAP1	assembled-molecule	1	Chromosome	OZ499737.1	<>	na	Primary Assembly	164530762	na
SUPER_2_HAP1	assembled-molecule	2	Chromosome	OZ499738.1	<>	na	Primary Assembly	125069302	na
SUPER_3_HAP1	assembled-molecule	3	Chromosome	OZ499739.1	<>	na	Primary Assembly	118997103	na
SUPER_4_HAP1	assembled-molecule	4	Chromosome	OZ499740.1	<>	na	Primary Assembly	78704105	na
SUPER_5_HAP1	assembled-molecule	5	Chromosome	OZ499741.1	<>	na	Primary Assembly	77323741	na
SUPER_6_HAP1	assembled-molecule	6	Chromosome	OZ499742.1	<>	na	Primary Assembly	68395236	na
SUPER_7_HAP1	assembled-molecule	7	Chromosome	OZ499743.1	<>	na	Primary Assembly	42550361	na
SUPER_8_HAP1	assembled-molecule	8	Chromosome	OZ499744.1	<>	na	Primary Assembly	39076363	na
SUPER_9_HAP1	assembled-molecule	9	Chromosome	OZ499745.1	<>	na	Primary Assembly	34187396	na
SUPER_10_HAP1	assembled-molecule	10	Chromosome	OZ499746.1	<>	na	Primary Assembly	34176738	na
SUPER_11_HAP1	assembled-molecule	11	Chromosome	OZ499747.1	<>	na	Primary Assembly	28861432	na
SUPER_12_HAP1	assembled-molecule	12	Chromosome	OZ499748.1	<>	na	Primary Assembly	28573364	na
SUPER_13_HAP1	assembled-molecule	13	Chromosome	OZ499749.1	<>	na	Primary Assembly	27398857	na
SUPER_14_HAP1	assembled-molecule	14	Chromosome	OZ499750.1	<>	na	Primary Assembly	25337105	na
SUPER_15_HAP1	assembled-molecule	15	Chromosome	OZ499751.1	<>	na	Primary Assembly	24486653	na
SUPER_16_HAP1	assembled-molecule	16	Chromosome	OZ499752.1	<>	na	Primary Assembly	21255360	na
SUPER_17_HAP1	assembled-molecule	17	Chromosome	OZ499753.1	<>	na	Primary Assembly	17993001	na
SUPER_18_HAP1	assembled-molecule	18	Chromosome	OZ499754.1	<>	na	Primary Assembly	17441975	na
SUPER_19_HAP1	assembled-molecule	19	Chromosome	OZ499770.1	<>	na	Primary Assembly	17380205	na
SUPER_20_HAP1	assembled-molecule	20	Chromosome	OZ499755.1	<>	na	Primary Assembly	16894089	na
SUPER_21_HAP1	assembled-molecule	21	Chromosome	OZ499756.1	<>	na	Primary Assembly	14048225	na
SUPER_22_HAP1	assembled-molecule	22	Chromosome	OZ499757.1	<>	na	Primary Assembly	13481327	na
SUPER_23_HAP1	assembled-molecule	23	Chromosome	OZ499758.1	<>	na	Primary Assembly	12975554	na
SUPER_24_HAP1	assembled-molecule	24	Chromosome	OZ499759.1	<>	na	Primary Assembly	12115750	na
SUPER_25_HAP1	assembled-molecule	25	Chromosome	OZ499760.1	<>	na	Primary Assembly	10289256	na
SUPER_26_HAP1	assembled-molecule	26	Chromosome	OZ499761.1	<>	na	Primary Assembly	10174607	na
SUPER_27_HAP1	assembled-molecule	27	Chromosome	OZ499762.1	<>	na	Primary Assembly	9703458	na
SUPER_28_HAP1	assembled-molecule	28	Chromosome	OZ499763.1	<>	na	Primary Assembly	9209322	na
SUPER_29_HAP1	assembled-molecule	29	Chromosome	OZ499764.1	<>	na	Primary Assembly	8934048	na
SUPER_30_HAP1	assembled-molecule	30	Chromosome	OZ499765.1	<>	na	Primary Assembly	8769497	na
SUPER_31_HAP1	assembled-molecule	31	Chromosome	OZ499766.1	<>	na	Primary Assembly	8629152	na
SUPER_32_HAP1	assembled-molecule	32	Chromosome	OZ499767.1	<>	na	Primary Assembly	8248560	na
SUPER_33_HAP1	assembled-molecule	33	Chromosome	OZ499768.1	<>	na	Primary Assembly	7843449	na
SUPER_34_HAP1	assembled-molecule	34	Chromosome	OZ499769.1	<>	na	Primary Assembly	7225387	na
SUPER_35_HAP1	assembled-molecule	35	Chromosome	OZ499771.1	<>	na	Primary Assembly	6558215	na
SUPER_36_HAP1	assembled-molecule	36	Chromosome	OZ499772.1	<>	na	Primary Assembly	6479945	na
SUPER_37_HAP1	assembled-molecule	37	Chromosome	OZ499773.1	<>	na	Primary Assembly	6461357	na
SUPER_38_HAP1	assembled-molecule	38	Chromosome	OZ499774.1	<>	na	Primary Assembly	4993023	na
SUPER_W_HAP1	assembled-molecule	W	Chromosome	OZ499775.1	<>	na	Primary Assembly	45347863	na
SUPER_Z_HAP1	assembled-molecule	Z	Chromosome	OZ499776.1	<>	na	Primary Assembly	91189489	na
SUPER_Z_unloc_1_HAP1	unlocalized-scaffold	Z	Chromosome	CFWXTM010000001.1	<>	na	Primary Assembly	701764	na
SUPER_Z_unloc_2_HAP1	unlocalized-scaffold	Z	Chromosome	CFWXTM010000002.1	<>	na	Primary Assembly	451430	na
SUPER_Z_unloc_3_HAP1	unlocalized-scaffold	Z	Chromosome	CFWXTM010000003.1	<>	na	Primary Assembly	283811	na
SUPER_Z_unloc_4_HAP1	unlocalized-scaffold	Z	Chromosome	CFWXTM010000004.1	<>	na	Primary Assembly	214331	na
SUPER_Z_unloc_5_HAP1	unlocalized-scaffold	Z	Chromosome	CFWXTM010000005.1	<>	na	Primary Assembly	184754	na
HAP1_SCAFFOLD_42	unplaced-scaffold	na	na	CFWXTM010000006.1	<>	na	Primary Assembly	3959728	na
HAP1_SCAFFOLD_44	unplaced-scaffold	na	na	CFWXTM010000007.1	<>	na	Primary Assembly	3298575	na
HAP1_SCAFFOLD_45	unplaced-scaffold	na	na	CFWXTM010000008.1	<>	na	Primary Assembly	2280821	na
HAP1_SCAFFOLD_46	unplaced-scaffold	na	na	CFWXTM010000009.1	<>	na	Primary Assembly	1797575	na
HAP1_SCAFFOLD_47	unplaced-scaffold	na	na	CFWXTM010000010.1	<>	na	Primary Assembly	1555901	na
HAP1_SCAFFOLD_48	unplaced-scaffold	na	na	CFWXTM010000011.1	<>	na	Primary Assembly	1498052	na
HAP1_SCAFFOLD_49	unplaced-scaffold	na	na	CFWXTM010000012.1	<>	na	Primary Assembly	1323184	na
HAP1_SCAFFOLD_50	unplaced-scaffold	na	na	CFWXTM010000013.1	<>	na	Primary Assembly	1322905	na
HAP1_SCAFFOLD_51	unplaced-scaffold	na	na	CFWXTM010000014.1	<>	na	Primary Assembly	1247066	na
HAP1_SCAFFOLD_52	unplaced-scaffold	na	na	CFWXTM010000015.1	<>	na	Primary Assembly	1070799	na
HAP1_SCAFFOLD_53	unplaced-scaffold	na	na	CFWXTM010000016.1	<>	na	Primary Assembly	1026000	na
HAP1_SCAFFOLD_54	unplaced-scaffold	na	na	CFWXTM010000017.1	<>	na	Primary Assembly	918750	na
HAP1_SCAFFOLD_55	unplaced-scaffold	na	na	CFWXTM010000018.1	<>	na	Primary Assembly	898306	na
HAP1_SCAFFOLD_56	unplaced-scaffold	na	na	CFWXTM010000019.1	<>	na	Primary Assembly	864853	na
HAP1_SCAFFOLD_57	unplaced-scaffold	na	na	CFWXTM010000020.1	<>	na	Primary Assembly	828670	na
HAP1_SCAFFOLD_58	unplaced-scaffold	na	na	CFWXTM010000021.1	<>	na	Primary Assembly	803173	na
HAP1_SCAFFOLD_60	unplaced-scaffold	na	na	CFWXTM010000022.1	<>	na	Primary Assembly	767982	na
HAP1_SCAFFOLD_61	unplaced-scaffold	na	na	CFWXTM010000023.1	<>	na	Primary Assembly	755775	na
HAP1_SCAFFOLD_62	unplaced-scaffold	na	na	CFWXTM010000024.1	<>	na	Primary Assembly	723999	na
HAP1_SCAFFOLD_64	unplaced-scaffold	na	na	CFWXTM010000025.1	<>	na	Primary Assembly	710766	na
HAP1_SCAFFOLD_65	unplaced-scaffold	na	na	CFWXTM010000026.1	<>	na	Primary Assembly	673379	na
HAP1_SCAFFOLD_66	unplaced-scaffold	na	na	CFWXTM010000027.1	<>	na	Primary Assembly	648703	na
HAP1_SCAFFOLD_67	unplaced-scaffold	na	na	CFWXTM010000028.1	<>	na	Primary Assembly	628121	na
HAP1_SCAFFOLD_68	unplaced-scaffold	na	na	CFWXTM010000029.1	<>	na	Primary Assembly	616870	na
HAP1_SCAFFOLD_69	unplaced-scaffold	na	na	CFWXTM010000030.1	<>	na	Primary Assembly	579738	na
HAP1_SCAFFOLD_70	unplaced-scaffold	na	na	CFWXTM010000031.1	<>	na	Primary Assembly	571326	na
HAP1_SCAFFOLD_71	unplaced-scaffold	na	na	CFWXTM010000032.1	<>	na	Primary Assembly	563763	na
HAP1_SCAFFOLD_72	unplaced-scaffold	na	na	CFWXTM010000033.1	<>	na	Primary Assembly	534312	na
HAP1_SCAFFOLD_73	unplaced-scaffold	na	na	CFWXTM010000034.1	<>	na	Primary Assembly	510411	na
HAP1_SCAFFOLD_74	unplaced-scaffold	na	na	CFWXTM010000035.1	<>	na	Primary Assembly	497745	na
HAP1_SCAFFOLD_75	unplaced-scaffold	na	na	CFWXTM010000036.1	<>	na	Primary Assembly	495351	na
HAP1_SCAFFOLD_78	unplaced-scaffold	na	na	CFWXTM010000037.1	<>	na	Primary Assembly	372732	na
HAP1_SCAFFOLD_81	unplaced-scaffold	na	na	CFWXTM010000038.1	<>	na	Primary Assembly	319212	na
HAP1_SCAFFOLD_82	unplaced-scaffold	na	na	CFWXTM010000039.1	<>	na	Primary Assembly	271704	na
HAP1_SCAFFOLD_83	unplaced-scaffold	na	na	CFWXTM010000040.1	<>	na	Primary Assembly	266855	na
HAP1_SCAFFOLD_84	unplaced-scaffold	na	na	CFWXTM010000041.1	<>	na	Primary Assembly	264287	na
HAP1_SCAFFOLD_85	unplaced-scaffold	na	na	CFWXTM010000042.1	<>	na	Primary Assembly	256424	na
HAP1_SCAFFOLD_86	unplaced-scaffold	na	na	CFWXTM010000043.1	<>	na	Primary Assembly	246356	na
HAP1_SCAFFOLD_87	unplaced-scaffold	na	na	CFWXTM010000044.1	<>	na	Primary Assembly	235725	na
HAP1_SCAFFOLD_88	unplaced-scaffold	na	na	CFWXTM010000045.1	<>	na	Primary Assembly	227477	na
HAP1_SCAFFOLD_89	unplaced-scaffold	na	na	CFWXTM010000046.1	<>	na	Primary Assembly	226584	na
HAP1_SCAFFOLD_90	unplaced-scaffold	na	na	CFWXTM010000047.1	<>	na	Primary Assembly	221820	na
HAP1_SCAFFOLD_91	unplaced-scaffold	na	na	CFWXTM010000048.1	<>	na	Primary Assembly	198752	na
HAP1_SCAFFOLD_92	unplaced-scaffold	na	na	CFWXTM010000049.1	<>	na	Primary Assembly	198697	na
HAP1_SCAFFOLD_94	unplaced-scaffold	na	na	CFWXTM010000050.1	<>	na	Primary Assembly	171922	na
HAP1_SCAFFOLD_95	unplaced-scaffold	na	na	CFWXTM010000051.1	<>	na	Primary Assembly	160127	na
HAP1_SCAFFOLD_96	unplaced-scaffold	na	na	CFWXTM010000052.1	<>	na	Primary Assembly	154758	na
HAP1_SCAFFOLD_97	unplaced-scaffold	na	na	CFWXTM010000053.1	<>	na	Primary Assembly	153208	na
HAP1_SCAFFOLD_98	unplaced-scaffold	na	na	CFWXTM010000054.1	<>	na	Primary Assembly	125240	na
HAP1_SCAFFOLD_99	unplaced-scaffold	na	na	CFWXTM010000055.1	<>	na	Primary Assembly	120578	na
HAP1_SCAFFOLD_100	unplaced-scaffold	na	na	CFWXTM010000056.1	<>	na	Primary Assembly	106370	na
HAP1_SCAFFOLD_101	unplaced-scaffold	na	na	CFWXTM010000057.1	<>	na	Primary Assembly	93039	na
HAP1_SCAFFOLD_102	unplaced-scaffold	na	na	CFWXTM010000058.1	<>	na	Primary Assembly	70285	na
HAP1_SCAFFOLD_103	unplaced-scaffold	na	na	CFWXTM010000059.1	<>	na	Primary Assembly	68172	na
HAP1_SCAFFOLD_104	unplaced-scaffold	na	na	CFWXTM010000060.1	<>	na	Primary Assembly	57639	na
HAP1_SCAFFOLD_105	unplaced-scaffold	na	na	CFWXTM010000061.1	<>	na	Primary Assembly	54867	na
HAP1_SCAFFOLD_106	unplaced-scaffold	na	na	CFWXTM010000062.1	<>	na	Primary Assembly	4294	na
scaffold_MT_1	assembled-molecule	MT	Mitochondrion	OZ499777.1	<>	na	non-nuclear	16908	na