# Assembly name:  bCorFru1.hap1.1
# Organism name:  Corvus frugilegus (rook)
# Taxid:          75140
# BioSample:      SAMEA118680420
# BioProject:     PRJEB122715
# Submitter:      WELLCOME SANGER INSTITUTE
# Date:           2026-09-08
# Assembly type:  haploid (haplotype 1)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    CFWXTJ01
# Assembly method: various
# Genome coverage: 35x
# Sequencing technology: Oxford Nanopore,Arima2
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_987196625.1
# Linked assembly: GCA_987196725.1 (haplotype 2)
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1_HAP1	assembled-molecule	1	Chromosome	OZ499695.1	<>	na	Primary Assembly	160222809	na
SUPER_2_HAP1	assembled-molecule	2	Chromosome	OZ499696.1	<>	na	Primary Assembly	126765112	na
SUPER_3_HAP1	assembled-molecule	3	Chromosome	OZ499697.1	<>	na	Primary Assembly	123669328	na
SUPER_4_HAP1	assembled-molecule	4	Chromosome	OZ499698.1	<>	na	Primary Assembly	77958562	na
SUPER_5_HAP1	assembled-molecule	5	Chromosome	OZ499699.1	<>	na	Primary Assembly	76331610	na
SUPER_6_HAP1	assembled-molecule	6	Chromosome	OZ499700.1	<>	na	Primary Assembly	66751875	na
SUPER_7_HAP1	assembled-molecule	7	Chromosome	OZ499701.1	<>	na	Primary Assembly	42434110	na
SUPER_8_HAP1	assembled-molecule	8	Chromosome	OZ499702.1	<>	na	Primary Assembly	39538562	na
SUPER_9_HAP1	assembled-molecule	9	Chromosome	OZ499703.1	<>	na	Primary Assembly	33834463	na
SUPER_10_HAP1	assembled-molecule	10	Chromosome	OZ499704.1	<>	na	Primary Assembly	29840848	na
SUPER_11_HAP1	assembled-molecule	11	Chromosome	OZ499705.1	<>	na	Primary Assembly	24100810	na
SUPER_12_HAP1	assembled-molecule	12	Chromosome	OZ499706.1	<>	na	Primary Assembly	23098902	na
SUPER_13_HAP1	assembled-molecule	13	Chromosome	OZ499707.1	<>	na	Primary Assembly	22844496	na
SUPER_14_HAP1	assembled-molecule	14	Chromosome	OZ499708.1	<>	na	Primary Assembly	22086821	na
SUPER_15_HAP1	assembled-molecule	15	Chromosome	OZ499709.1	<>	na	Primary Assembly	21751103	na
SUPER_16_HAP1	assembled-molecule	16	Chromosome	OZ499710.1	<>	na	Primary Assembly	18320695	na
SUPER_17_HAP1	assembled-molecule	17	Chromosome	OZ499711.1	<>	na	Primary Assembly	17422845	na
SUPER_18_HAP1	assembled-molecule	18	Chromosome	OZ499712.1	<>	na	Primary Assembly	16737908	na
SUPER_19_HAP1	assembled-molecule	19	Chromosome	OZ499713.1	<>	na	Primary Assembly	14296407	na
SUPER_20_HAP1	assembled-molecule	20	Chromosome	OZ499714.1	<>	na	Primary Assembly	13313200	na
SUPER_21_HAP1	assembled-molecule	21	Chromosome	OZ499715.1	<>	na	Primary Assembly	13146225	na
SUPER_22_HAP1	assembled-molecule	22	Chromosome	OZ499716.1	<>	na	Primary Assembly	12146685	na
SUPER_23_HAP1	assembled-molecule	23	Chromosome	OZ499717.1	<>	na	Primary Assembly	10090805	na
SUPER_24_HAP1	assembled-molecule	24	Chromosome	OZ499718.1	<>	na	Primary Assembly	9480997	na
SUPER_25_HAP1	assembled-molecule	25	Chromosome	OZ499719.1	<>	na	Primary Assembly	9340593	na
SUPER_26_HAP1	assembled-molecule	26	Chromosome	OZ499720.1	<>	na	Primary Assembly	8680355	na
SUPER_27_HAP1	assembled-molecule	27	Chromosome	OZ499721.1	<>	na	Primary Assembly	8212301	na
SUPER_28_HAP1	assembled-molecule	28	Chromosome	OZ499722.1	<>	na	Primary Assembly	7829637	na
SUPER_29_HAP1	assembled-molecule	29	Chromosome	OZ499723.1	<>	na	Primary Assembly	7805042	na
SUPER_30_HAP1	assembled-molecule	30	Chromosome	OZ499724.1	<>	na	Primary Assembly	7668210	na
SUPER_31_HAP1	assembled-molecule	31	Chromosome	OZ499725.1	<>	na	Primary Assembly	7582397	na
SUPER_32_HAP1	assembled-molecule	32	Chromosome	OZ499726.1	<>	na	Primary Assembly	7170340	na
SUPER_33_HAP1	assembled-molecule	33	Chromosome	OZ499727.1	<>	na	Primary Assembly	5833313	na
SUPER_34_HAP1	assembled-molecule	34	Chromosome	OZ499728.1	<>	na	Primary Assembly	5611597	na
SUPER_35_HAP1	assembled-molecule	35	Chromosome	OZ499729.1	<>	na	Primary Assembly	5081994	na
SUPER_36_HAP1	assembled-molecule	36	Chromosome	OZ499730.1	<>	na	Primary Assembly	4879549	na
SUPER_37_HAP1	assembled-molecule	37	Chromosome	OZ499731.1	<>	na	Primary Assembly	4564547	na
SUPER_38_HAP1	assembled-molecule	38	Chromosome	OZ499732.1	<>	na	Primary Assembly	4488901	na
SUPER_39_HAP1	assembled-molecule	39	Chromosome	OZ499733.1	<>	na	Primary Assembly	3919253	na
SUPER_W_HAP1	assembled-molecule	W	Chromosome	OZ499734.1	<>	na	Primary Assembly	32811667	na
SUPER_Z_HAP1	assembled-molecule	Z	Chromosome	OZ499735.1	<>	na	Primary Assembly	81222373	na
SUPER_11_HAP1_unloc_1	unlocalized-scaffold	11	Chromosome	CFWXTJ010000001.1	<>	na	Primary Assembly	461931	na
HAP1_SCAFFOLD_54	unplaced-scaffold	na	na	CFWXTJ010000002.1	<>	na	Primary Assembly	3304490	na
HAP1_SCAFFOLD_56	unplaced-scaffold	na	na	CFWXTJ010000003.1	<>	na	Primary Assembly	2561031	na
HAP1_SCAFFOLD_57	unplaced-scaffold	na	na	CFWXTJ010000004.1	<>	na	Primary Assembly	2095797	na
HAP1_SCAFFOLD_58	unplaced-scaffold	na	na	CFWXTJ010000005.1	<>	na	Primary Assembly	1668579	na
HAP1_SCAFFOLD_59	unplaced-scaffold	na	na	CFWXTJ010000006.1	<>	na	Primary Assembly	1420561	na
HAP1_SCAFFOLD_63	unplaced-scaffold	na	na	CFWXTJ010000007.1	<>	na	Primary Assembly	971432	na
HAP1_SCAFFOLD_64	unplaced-scaffold	na	na	CFWXTJ010000008.1	<>	na	Primary Assembly	938696	na
HAP1_SCAFFOLD_65	unplaced-scaffold	na	na	CFWXTJ010000009.1	<>	na	Primary Assembly	872695	na
HAP1_SCAFFOLD_66	unplaced-scaffold	na	na	CFWXTJ010000010.1	<>	na	Primary Assembly	871560	na
HAP1_SCAFFOLD_67	unplaced-scaffold	na	na	CFWXTJ010000011.1	<>	na	Primary Assembly	798176	na
HAP1_SCAFFOLD_68	unplaced-scaffold	na	na	CFWXTJ010000012.1	<>	na	Primary Assembly	789185	na
HAP1_SCAFFOLD_70	unplaced-scaffold	na	na	CFWXTJ010000013.1	<>	na	Primary Assembly	729305	na
HAP1_SCAFFOLD_71	unplaced-scaffold	na	na	CFWXTJ010000014.1	<>	na	Primary Assembly	714204	na
HAP1_SCAFFOLD_72	unplaced-scaffold	na	na	CFWXTJ010000015.1	<>	na	Primary Assembly	662494	na
HAP1_SCAFFOLD_73	unplaced-scaffold	na	na	CFWXTJ010000016.1	<>	na	Primary Assembly	630620	na
HAP1_SCAFFOLD_74	unplaced-scaffold	na	na	CFWXTJ010000017.1	<>	na	Primary Assembly	503735	na
HAP1_SCAFFOLD_75	unplaced-scaffold	na	na	CFWXTJ010000018.1	<>	na	Primary Assembly	496066	na
HAP1_SCAFFOLD_76	unplaced-scaffold	na	na	CFWXTJ010000019.1	<>	na	Primary Assembly	493229	na
HAP1_SCAFFOLD_77	unplaced-scaffold	na	na	CFWXTJ010000020.1	<>	na	Primary Assembly	493226	na
HAP1_SCAFFOLD_78	unplaced-scaffold	na	na	CFWXTJ010000021.1	<>	na	Primary Assembly	488394	na
HAP1_SCAFFOLD_80	unplaced-scaffold	na	na	CFWXTJ010000022.1	<>	na	Primary Assembly	448083	na
HAP1_SCAFFOLD_81	unplaced-scaffold	na	na	CFWXTJ010000023.1	<>	na	Primary Assembly	409392	na
HAP1_SCAFFOLD_82	unplaced-scaffold	na	na	CFWXTJ010000024.1	<>	na	Primary Assembly	403418	na
HAP1_SCAFFOLD_83	unplaced-scaffold	na	na	CFWXTJ010000025.1	<>	na	Primary Assembly	390390	na
HAP1_SCAFFOLD_84	unplaced-scaffold	na	na	CFWXTJ010000026.1	<>	na	Primary Assembly	387387	na
HAP1_SCAFFOLD_86	unplaced-scaffold	na	na	CFWXTJ010000027.1	<>	na	Primary Assembly	369705	na
HAP1_SCAFFOLD_87	unplaced-scaffold	na	na	CFWXTJ010000028.1	<>	na	Primary Assembly	360167	na
HAP1_SCAFFOLD_89	unplaced-scaffold	na	na	CFWXTJ010000029.1	<>	na	Primary Assembly	350427	na
HAP1_SCAFFOLD_90	unplaced-scaffold	na	na	CFWXTJ010000030.1	<>	na	Primary Assembly	327048	na
HAP1_SCAFFOLD_92	unplaced-scaffold	na	na	CFWXTJ010000031.1	<>	na	Primary Assembly	316228	na
HAP1_SCAFFOLD_93	unplaced-scaffold	na	na	CFWXTJ010000032.1	<>	na	Primary Assembly	307350	na
HAP1_SCAFFOLD_94	unplaced-scaffold	na	na	CFWXTJ010000033.1	<>	na	Primary Assembly	305116	na
HAP1_SCAFFOLD_95	unplaced-scaffold	na	na	CFWXTJ010000034.1	<>	na	Primary Assembly	304527	na
HAP1_SCAFFOLD_96	unplaced-scaffold	na	na	CFWXTJ010000035.1	<>	na	Primary Assembly	300069	na
HAP1_SCAFFOLD_97	unplaced-scaffold	na	na	CFWXTJ010000036.1	<>	na	Primary Assembly	294421	na
HAP1_SCAFFOLD_98	unplaced-scaffold	na	na	CFWXTJ010000037.1	<>	na	Primary Assembly	292748	na
HAP1_SCAFFOLD_99	unplaced-scaffold	na	na	CFWXTJ010000038.1	<>	na	Primary Assembly	291013	na
HAP1_SCAFFOLD_100	unplaced-scaffold	na	na	CFWXTJ010000039.1	<>	na	Primary Assembly	290441	na
HAP1_SCAFFOLD_102	unplaced-scaffold	na	na	CFWXTJ010000040.1	<>	na	Primary Assembly	281822	na
HAP1_SCAFFOLD_103	unplaced-scaffold	na	na	CFWXTJ010000041.1	<>	na	Primary Assembly	281362	na
HAP1_SCAFFOLD_104	unplaced-scaffold	na	na	CFWXTJ010000042.1	<>	na	Primary Assembly	276849	na
HAP1_SCAFFOLD_105	unplaced-scaffold	na	na	CFWXTJ010000043.1	<>	na	Primary Assembly	276704	na
HAP1_SCAFFOLD_106	unplaced-scaffold	na	na	CFWXTJ010000044.1	<>	na	Primary Assembly	266385	na
HAP1_SCAFFOLD_107	unplaced-scaffold	na	na	CFWXTJ010000045.1	<>	na	Primary Assembly	248670	na
HAP1_SCAFFOLD_108	unplaced-scaffold	na	na	CFWXTJ010000046.1	<>	na	Primary Assembly	244523	na
HAP1_SCAFFOLD_109	unplaced-scaffold	na	na	CFWXTJ010000047.1	<>	na	Primary Assembly	229931	na
HAP1_SCAFFOLD_110	unplaced-scaffold	na	na	CFWXTJ010000048.1	<>	na	Primary Assembly	216492	na
HAP1_SCAFFOLD_112	unplaced-scaffold	na	na	CFWXTJ010000049.1	<>	na	Primary Assembly	208654	na
HAP1_SCAFFOLD_113	unplaced-scaffold	na	na	CFWXTJ010000050.1	<>	na	Primary Assembly	208076	na
HAP1_SCAFFOLD_114	unplaced-scaffold	na	na	CFWXTJ010000051.1	<>	na	Primary Assembly	201186	na
HAP1_SCAFFOLD_115	unplaced-scaffold	na	na	CFWXTJ010000052.1	<>	na	Primary Assembly	191950	na
HAP1_SCAFFOLD_117	unplaced-scaffold	na	na	CFWXTJ010000053.1	<>	na	Primary Assembly	177890	na
HAP1_SCAFFOLD_119	unplaced-scaffold	na	na	CFWXTJ010000054.1	<>	na	Primary Assembly	167278	na
HAP1_SCAFFOLD_120	unplaced-scaffold	na	na	CFWXTJ010000055.1	<>	na	Primary Assembly	166790	na
HAP1_SCAFFOLD_121	unplaced-scaffold	na	na	CFWXTJ010000056.1	<>	na	Primary Assembly	161849	na
HAP1_SCAFFOLD_122	unplaced-scaffold	na	na	CFWXTJ010000057.1	<>	na	Primary Assembly	155639	na
HAP1_SCAFFOLD_123	unplaced-scaffold	na	na	CFWXTJ010000058.1	<>	na	Primary Assembly	143388	na
HAP1_SCAFFOLD_124	unplaced-scaffold	na	na	CFWXTJ010000059.1	<>	na	Primary Assembly	132975	na
HAP1_SCAFFOLD_125	unplaced-scaffold	na	na	CFWXTJ010000060.1	<>	na	Primary Assembly	131005	na
HAP1_SCAFFOLD_126	unplaced-scaffold	na	na	CFWXTJ010000061.1	<>	na	Primary Assembly	124277	na
HAP1_SCAFFOLD_127	unplaced-scaffold	na	na	CFWXTJ010000062.1	<>	na	Primary Assembly	102523	na
HAP1_SCAFFOLD_128	unplaced-scaffold	na	na	CFWXTJ010000063.1	<>	na	Primary Assembly	70539	na
scaffold_MT_1	assembled-molecule	MT	Mitochondrion	OZ499736.1	<>	na	non-nuclear	16928	na