# Assembly name: bCarCar1.hap1.1 # Organism name: Carduelis carduelis (Eurasian goldfinch) # Taxid: 37600 # BioSample: SAMEA117632800 # BioProject: PRJEB122701 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-09-08 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CFWXVN01 # Assembly method: various # Genome coverage: 59x # Sequencing technology: Oxford Nanopore,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_987197145.1 # Linked assembly: GCA_987196765.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ500244.1 <> na Primary Assembly 157510207 na SUPER_2 assembled-molecule 2 Chromosome OZ500245.1 <> na Primary Assembly 119117479 na SUPER_3 assembled-molecule 3 Chromosome OZ500246.1 <> na Primary Assembly 118583930 na SUPER_4 assembled-molecule 4 Chromosome OZ500247.1 <> na Primary Assembly 74991369 na SUPER_5 assembled-molecule 5 Chromosome OZ500248.1 <> na Primary Assembly 73323400 na SUPER_6 assembled-molecule 6 Chromosome OZ500249.1 <> na Primary Assembly 65493233 na SUPER_7 assembled-molecule 7 Chromosome OZ500250.1 <> na Primary Assembly 36905336 na SUPER_8 assembled-molecule 8 Chromosome OZ500251.1 <> na Primary Assembly 35678842 na SUPER_9 assembled-molecule 9 Chromosome OZ500252.1 <> na Primary Assembly 34185361 na SUPER_10 assembled-molecule 10 Chromosome OZ500253.1 <> na Primary Assembly 27170837 na SUPER_11 assembled-molecule 11 Chromosome OZ500254.1 <> na Primary Assembly 23039780 na SUPER_12 assembled-molecule 12 Chromosome OZ500255.1 <> na Primary Assembly 22150002 na SUPER_13 assembled-molecule 13 Chromosome OZ500256.1 <> na Primary Assembly 21642657 na SUPER_14 assembled-molecule 14 Chromosome OZ500257.1 <> na Primary Assembly 19584952 na SUPER_15 assembled-molecule 15 Chromosome OZ500258.1 <> na Primary Assembly 18797314 na SUPER_16 assembled-molecule 16 Chromosome OZ500259.1 <> na Primary Assembly 16390400 na SUPER_17 assembled-molecule 17 Chromosome OZ500260.1 <> na Primary Assembly 15212000 na SUPER_18 assembled-molecule 18 Chromosome OZ500261.1 <> na Primary Assembly 14185000 na SUPER_19 assembled-molecule 19 Chromosome OZ500262.1 <> na Primary Assembly 12929731 na SUPER_20 assembled-molecule 20 Chromosome OZ500263.1 <> na Primary Assembly 11393942 na SUPER_21 assembled-molecule 21 Chromosome OZ500264.1 <> na Primary Assembly 11290215 na SUPER_22 assembled-molecule 22 Chromosome OZ500265.1 <> na Primary Assembly 10706414 na SUPER_23 assembled-molecule 23 Chromosome OZ500266.1 <> na Primary Assembly 8230959 na SUPER_24 assembled-molecule 24 Chromosome OZ500267.1 <> na Primary Assembly 8178000 na SUPER_25 assembled-molecule 25 Chromosome OZ500268.1 <> na Primary Assembly 7022980 na SUPER_26 assembled-molecule 26 Chromosome OZ500269.1 <> na Primary Assembly 6915000 na SUPER_27 assembled-molecule 27 Chromosome OZ500270.1 <> na Primary Assembly 5200200 na SUPER_28 assembled-molecule 28 Chromosome OZ500271.1 <> na Primary Assembly 6600287 na SUPER_29 assembled-molecule 29 Chromosome OZ500272.1 <> na Primary Assembly 6547000 na SUPER_30 assembled-molecule 30 Chromosome OZ500273.1 <> na Primary Assembly 6318000 na SUPER_31 assembled-molecule 31 Chromosome OZ500274.1 <> na Primary Assembly 5543297 na SUPER_32 assembled-molecule 32 Chromosome OZ500275.1 <> na Primary Assembly 5287513 na SUPER_33 assembled-molecule 33 Chromosome OZ500276.1 <> na Primary Assembly 4793144 na SUPER_34 assembled-molecule 34 Chromosome OZ500277.1 <> na Primary Assembly 3800000 na SUPER_35 assembled-molecule 35 Chromosome OZ500278.1 <> na Primary Assembly 3570000 na SUPER_36 assembled-molecule 36 Chromosome OZ500279.1 <> na Primary Assembly 3252000 na SUPER_37 assembled-molecule 37 Chromosome OZ500280.1 <> na Primary Assembly 2664000 na SUPER_38 assembled-molecule 38 Chromosome OZ500281.1 <> na Primary Assembly 2587000 na SUPER_39 assembled-molecule 39 Chromosome OZ500282.1 <> na Primary Assembly 2426802 na SUPER_40 assembled-molecule 40 Chromosome OZ500283.1 <> na Primary Assembly 1500000 na SUPER_W assembled-molecule W Chromosome OZ500284.1 <> na Primary Assembly 27876946 na SUPER_Z assembled-molecule Z Chromosome OZ500285.1 <> na Primary Assembly 91131308 na SUPER_27_unloc_1 unlocalized-scaffold 27 Chromosome CFWXVN010000001.1 <> na Primary Assembly 1659000 na SUPER_W_unloc_1 unlocalized-scaffold W Chromosome CFWXVN010000002.1 <> na Primary Assembly 1535000 na SUPER_W_unloc_2 unlocalized-scaffold W Chromosome CFWXVN010000003.1 <> na Primary Assembly 1308000 na SUPER_W_unloc_3 unlocalized-scaffold W Chromosome CFWXVN010000004.1 <> na Primary Assembly 1190000 na SUPER_W_unloc_4 unlocalized-scaffold W Chromosome CFWXVN010000005.1 <> na Primary Assembly 701000 na SUPER_W_unloc_5 unlocalized-scaffold W Chromosome CFWXVN010000006.1 <> na Primary Assembly 372000 na SUPER_W_unloc_6 unlocalized-scaffold W Chromosome CFWXVN010000007.1 <> na Primary Assembly 194000 na SUPER_W_unloc_7 unlocalized-scaffold W Chromosome CFWXVN010000008.1 <> na Primary Assembly 171000 na SUPER_W_unloc_8 unlocalized-scaffold W Chromosome CFWXVN010000009.1 <> na Primary Assembly 56438 na HAP1_SCAFFOLD_14 unplaced-scaffold na na CFWXVN010000010.1 <> na Primary Assembly 221167 na HAP1_SCAFFOLD_42 unplaced-scaffold na na CFWXVN010000011.1 <> na Primary Assembly 2692000 na HAP1_SCAFFOLD_48 unplaced-scaffold na na CFWXVN010000012.1 <> na Primary Assembly 1529000 na HAP1_SCAFFOLD_49 unplaced-scaffold na na CFWXVN010000013.1 <> na Primary Assembly 1511575 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CFWXVN010000014.1 <> na Primary Assembly 1469899 na HAP1_SCAFFOLD_53 unplaced-scaffold na na CFWXVN010000015.1 <> na Primary Assembly 1273971 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CFWXVN010000016.1 <> na Primary Assembly 1193295 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CFWXVN010000017.1 <> na Primary Assembly 796659 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CFWXVN010000018.1 <> na Primary Assembly 678145 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CFWXVN010000019.1 <> na Primary Assembly 653688 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CFWXVN010000020.1 <> na Primary Assembly 644052 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CFWXVN010000021.1 <> na Primary Assembly 609582 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CFWXVN010000022.1 <> na Primary Assembly 603958 na HAP1_SCAFFOLD_67 unplaced-scaffold na na CFWXVN010000023.1 <> na Primary Assembly 537000 na HAP1_SCAFFOLD_69 unplaced-scaffold na na CFWXVN010000024.1 <> na Primary Assembly 494542 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CFWXVN010000025.1 <> na Primary Assembly 474854 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CFWXVN010000026.1 <> na Primary Assembly 455592 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CFWXVN010000027.1 <> na Primary Assembly 430810 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CFWXVN010000028.1 <> na Primary Assembly 418451 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CFWXVN010000029.1 <> na Primary Assembly 376000 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CFWXVN010000030.1 <> na Primary Assembly 369069 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CFWXVN010000031.1 <> na Primary Assembly 349489 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CFWXVN010000032.1 <> na Primary Assembly 280000 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CFWXVN010000033.1 <> na Primary Assembly 326928 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CFWXVN010000034.1 <> na Primary Assembly 301327 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CFWXVN010000035.1 <> na Primary Assembly 298000 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CFWXVN010000036.1 <> na Primary Assembly 234000 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CFWXVN010000037.1 <> na Primary Assembly 215692 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CFWXVN010000038.1 <> na Primary Assembly 202000 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CFWXVN010000039.1 <> na Primary Assembly 198725 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CFWXVN010000040.1 <> na Primary Assembly 185974 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CFWXVN010000041.1 <> na Primary Assembly 167000 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CFWXVN010000042.1 <> na Primary Assembly 160681 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CFWXVN010000043.1 <> na Primary Assembly 160000 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CFWXVN010000044.1 <> na Primary Assembly 158048 na HAP1_SCAFFOLD_101 unplaced-scaffold na na CFWXVN010000045.1 <> na Primary Assembly 157000 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CFWXVN010000046.1 <> na Primary Assembly 155177 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CFWXVN010000047.1 <> na Primary Assembly 153454 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CFWXVN010000048.1 <> na Primary Assembly 152972 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CFWXVN010000049.1 <> na Primary Assembly 142000 na HAP1_SCAFFOLD_108 unplaced-scaffold na na CFWXVN010000050.1 <> na Primary Assembly 134000 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CFWXVN010000051.1 <> na Primary Assembly 133000 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CFWXVN010000052.1 <> na Primary Assembly 132204 na HAP1_SCAFFOLD_111 unplaced-scaffold na na CFWXVN010000053.1 <> na Primary Assembly 128931 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CFWXVN010000054.1 <> na Primary Assembly 125000 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CFWXVN010000055.1 <> na Primary Assembly 124000 na HAP1_SCAFFOLD_115 unplaced-scaffold na na CFWXVN010000056.1 <> na Primary Assembly 121017 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CFWXVN010000057.1 <> na Primary Assembly 119000 na HAP1_SCAFFOLD_117 unplaced-scaffold na na CFWXVN010000058.1 <> na Primary Assembly 119000 na HAP1_SCAFFOLD_118 unplaced-scaffold na na CFWXVN010000059.1 <> na Primary Assembly 117000 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CFWXVN010000060.1 <> na Primary Assembly 113000 na HAP1_SCAFFOLD_120 unplaced-scaffold na na CFWXVN010000061.1 <> na Primary Assembly 111000 na HAP1_SCAFFOLD_121 unplaced-scaffold na na CFWXVN010000062.1 <> na Primary Assembly 109613 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CFWXVN010000063.1 <> na Primary Assembly 107000 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CFWXVN010000064.1 <> na Primary Assembly 105909 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CFWXVN010000065.1 <> na Primary Assembly 102776 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CFWXVN010000066.1 <> na Primary Assembly 102000 na HAP1_SCAFFOLD_128 unplaced-scaffold na na CFWXVN010000067.1 <> na Primary Assembly 95826 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CFWXVN010000068.1 <> na Primary Assembly 93000 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CFWXVN010000069.1 <> na Primary Assembly 85282 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CFWXVN010000070.1 <> na Primary Assembly 84000 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CFWXVN010000071.1 <> na Primary Assembly 83000 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CFWXVN010000072.1 <> na Primary Assembly 81000 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CFWXVN010000073.1 <> na Primary Assembly 79000 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CFWXVN010000074.1 <> na Primary Assembly 78000 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CFWXVN010000075.1 <> na Primary Assembly 72000 na HAP1_SCAFFOLD_138 unplaced-scaffold na na CFWXVN010000076.1 <> na Primary Assembly 71000 na HAP1_SCAFFOLD_139 unplaced-scaffold na na CFWXVN010000077.1 <> na Primary Assembly 67886 na HAP1_SCAFFOLD_140 unplaced-scaffold na na CFWXVN010000078.1 <> na Primary Assembly 65494 na HAP1_SCAFFOLD_141 unplaced-scaffold na na CFWXVN010000079.1 <> na Primary Assembly 65000 na HAP1_SCAFFOLD_142 unplaced-scaffold na na CFWXVN010000080.1 <> na Primary Assembly 63861 na HAP1_SCAFFOLD_143 unplaced-scaffold na na CFWXVN010000081.1 <> na Primary Assembly 60000 na HAP1_SCAFFOLD_144 unplaced-scaffold na na CFWXVN010000082.1 <> na Primary Assembly 59835 na HAP1_SCAFFOLD_145 unplaced-scaffold na na CFWXVN010000083.1 <> na Primary Assembly 54000 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CFWXVN010000084.1 <> na Primary Assembly 54000 na HAP1_SCAFFOLD_147 unplaced-scaffold na na CFWXVN010000085.1 <> na Primary Assembly 41000 na HAP1_SCAFFOLD_148 unplaced-scaffold na na CFWXVN010000086.1 <> na Primary Assembly 37225 na HAP1_SCAFFOLD_149 unplaced-scaffold na na CFWXVN010000087.1 <> na Primary Assembly 33000 na HAP1_SCAFFOLD_150 unplaced-scaffold na na CFWXVN010000088.1 <> na Primary Assembly 32000 na HAP1_SCAFFOLD_151 unplaced-scaffold na na CFWXVN010000089.1 <> na Primary Assembly 25000 na HAP1_SCAFFOLD_152 unplaced-scaffold na na CFWXVN010000090.1 <> na Primary Assembly 8947 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CFWXVN010000091.1 <> na Primary Assembly 2000 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ500286.1 <> na non-nuclear 16818 na