# Assembly name: bPhyTrc2.hap1.1 # Organism name: Phylloscopus trochilus (Willow warbler) # Taxid: 9182 # BioSample: SAMEA118680309 # BioProject: PRJEB122737 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-09-08 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CFWXWX01 # Assembly method: various # Genome coverage: 62x # Sequencing technology: Oxford Nanopore,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_987197715.1 # Linked assembly: GCA_987196545.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1_HAP1 assembled-molecule 1 Chromosome OZ500722.1 <> na Primary Assembly 160859051 na SUPER_2_HAP1 assembled-molecule 2 Chromosome OZ500723.1 <> na Primary Assembly 129476711 na SUPER_3_HAP1 assembled-molecule 3 Chromosome OZ500724.1 <> na Primary Assembly 123656582 na SUPER_4_HAP1 assembled-molecule 4 Chromosome OZ500725.1 <> na Primary Assembly 80569377 na SUPER_5_HAP1 assembled-molecule 5 Chromosome OZ500726.1 <> na Primary Assembly 78265034 na SUPER_6_HAP1 assembled-molecule 6 Chromosome OZ500727.1 <> na Primary Assembly 65876413 na SUPER_7_HAP1 assembled-molecule 7 Chromosome OZ500728.1 <> na Primary Assembly 44502346 na SUPER_8_HAP1 assembled-molecule 8 Chromosome OZ500729.1 <> na Primary Assembly 38292429 na SUPER_9_HAP1 assembled-molecule 9 Chromosome OZ500730.1 <> na Primary Assembly 34922437 na SUPER_10_HAP1 assembled-molecule 10 Chromosome OZ500731.1 <> na Primary Assembly 28818742 na SUPER_11_HAP1 assembled-molecule 11 Chromosome OZ500732.1 <> na Primary Assembly 24046599 na SUPER_12_HAP1 assembled-molecule 12 Chromosome OZ500733.1 <> na Primary Assembly 23732607 na SUPER_13_HAP1 assembled-molecule 13 Chromosome OZ500734.1 <> na Primary Assembly 22867672 na SUPER_14_HAP1 assembled-molecule 14 Chromosome OZ500735.1 <> na Primary Assembly 22490928 na SUPER_15_HAP1 assembled-molecule 15 Chromosome OZ500736.1 <> na Primary Assembly 20587216 na SUPER_16_HAP1 assembled-molecule 16 Chromosome OZ500737.1 <> na Primary Assembly 17612774 na SUPER_17_HAP1 assembled-molecule 17 Chromosome OZ500738.1 <> na Primary Assembly 15619138 na SUPER_18_HAP1 assembled-molecule 18 Chromosome OZ500739.1 <> na Primary Assembly 14784733 na SUPER_19_HAP1 assembled-molecule 19 Chromosome OZ500740.1 <> na Primary Assembly 13166651 na SUPER_20_HAP1 assembled-molecule 20 Chromosome OZ500741.1 <> na Primary Assembly 12476411 na SUPER_21_HAP1 assembled-molecule 21 Chromosome OZ500742.1 <> na Primary Assembly 12080921 na SUPER_22_HAP1 assembled-molecule 22 Chromosome OZ500743.1 <> na Primary Assembly 11903964 na SUPER_23_HAP1 assembled-molecule 23 Chromosome OZ500744.1 <> na Primary Assembly 10624164 na SUPER_24_HAP1 assembled-molecule 24 Chromosome OZ500745.1 <> na Primary Assembly 9481877 na SUPER_25_HAP1 assembled-molecule 25 Chromosome OZ500746.1 <> na Primary Assembly 8637739 na SUPER_26_HAP1 assembled-molecule 26 Chromosome OZ500747.1 <> na Primary Assembly 8493994 na SUPER_27_HAP1 assembled-molecule 27 Chromosome OZ500748.1 <> na Primary Assembly 8143812 na SUPER_28_HAP1 assembled-molecule 28 Chromosome OZ500749.1 <> na Primary Assembly 8089035 na SUPER_29_HAP1 assembled-molecule 29 Chromosome OZ500750.1 <> na Primary Assembly 7906035 na SUPER_30_HAP1 assembled-molecule 30 Chromosome OZ500751.1 <> na Primary Assembly 7655811 na SUPER_31_HAP1 assembled-molecule 31 Chromosome OZ500752.1 <> na Primary Assembly 7300814 na SUPER_32_HAP1 assembled-molecule 32 Chromosome OZ500753.1 <> na Primary Assembly 7125901 na SUPER_33_HAP1 assembled-molecule 33 Chromosome OZ500754.1 <> na Primary Assembly 6723920 na SUPER_34_HAP1 assembled-molecule 34 Chromosome OZ500755.1 <> na Primary Assembly 6508777 na SUPER_35_HAP1 assembled-molecule 35 Chromosome OZ500756.1 <> na Primary Assembly 5699074 na SUPER_36_HAP1 assembled-molecule 36 Chromosome OZ500757.1 <> na Primary Assembly 5596600 na SUPER_37_HAP1 assembled-molecule 37 Chromosome OZ500758.1 <> na Primary Assembly 4482948 na SUPER_38_HAP1 assembled-molecule 38 Chromosome OZ500759.1 <> na Primary Assembly 4292245 na SUPER_39_HAP1 assembled-molecule 39 Chromosome OZ500760.1 <> na Primary Assembly 4098566 na SUPER_W_HAP1 assembled-molecule W Chromosome OZ500761.1 <> na Primary Assembly 41766219 na SUPER_Z_HAP1 assembled-molecule Z Chromosome OZ500762.1 <> na Primary Assembly 90589511 na HAP1_SCAFFOLD_47 unplaced-scaffold na na CFWXWX010000001.1 <> na Primary Assembly 1761624 na HAP1_SCAFFOLD_49 unplaced-scaffold na na CFWXWX010000002.1 <> na Primary Assembly 1217825 na HAP1_SCAFFOLD_51 unplaced-scaffold na na CFWXWX010000003.1 <> na Primary Assembly 810628 na HAP1_SCAFFOLD_52 unplaced-scaffold na na CFWXWX010000004.1 <> na Primary Assembly 621436 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CFWXWX010000005.1 <> na Primary Assembly 423424 na HAP1_SCAFFOLD_56 unplaced-scaffold na na CFWXWX010000006.1 <> na Primary Assembly 399849 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CFWXWX010000007.1 <> na Primary Assembly 327258 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CFWXWX010000008.1 <> na Primary Assembly 317089 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CFWXWX010000009.1 <> na Primary Assembly 313448 na HAP1_SCAFFOLD_61 unplaced-scaffold na na CFWXWX010000010.1 <> na Primary Assembly 275729 na HAP1_SCAFFOLD_63 unplaced-scaffold na na CFWXWX010000011.1 <> na Primary Assembly 265415 na HAP1_SCAFFOLD_64 unplaced-scaffold na na CFWXWX010000012.1 <> na Primary Assembly 255437 na HAP1_SCAFFOLD_66 unplaced-scaffold na na CFWXWX010000013.1 <> na Primary Assembly 185612 na HAP1_SCAFFOLD_67 unplaced-scaffold na na CFWXWX010000014.1 <> na Primary Assembly 180119 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CFWXWX010000015.1 <> na Primary Assembly 92205 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CFWXWX010000016.1 <> na Primary Assembly 85299 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CFWXWX010000017.1 <> na Primary Assembly 63490 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CFWXWX010000018.1 <> na Primary Assembly 63305 na HAP1_SCAFFOLD_77 unplaced-scaffold na na CFWXWX010000019.1 <> na Primary Assembly 13712 na HAP1_SCAFFOLD_78 unplaced-scaffold na na CFWXWX010000020.1 <> na Primary Assembly 9075 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CFWXWX010000021.1 <> na Primary Assembly 8889 na HAP1_SCAFFOLD_80 unplaced-scaffold na na CFWXWX010000022.1 <> na Primary Assembly 6852 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CFWXWX010000023.1 <> na Primary Assembly 6045 na HAP1_SCAFFOLD_82 unplaced-scaffold na na CFWXWX010000024.1 <> na Primary Assembly 5351 na HAP1_SCAFFOLD_83 unplaced-scaffold na na CFWXWX010000025.1 <> na Primary Assembly 4714 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CFWXWX010000026.1 <> na Primary Assembly 4429 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CFWXWX010000027.1 <> na Primary Assembly 4176 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CFWXWX010000028.1 <> na Primary Assembly 3600 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CFWXWX010000029.1 <> na Primary Assembly 3548 na HAP1_SCAFFOLD_88 unplaced-scaffold na na CFWXWX010000030.1 <> na Primary Assembly 3141 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CFWXWX010000031.1 <> na Primary Assembly 3067 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CFWXWX010000032.1 <> na Primary Assembly 2946 na HAP1_SCAFFOLD_91 unplaced-scaffold na na CFWXWX010000033.1 <> na Primary Assembly 2864 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CFWXWX010000034.1 <> na Primary Assembly 2715 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CFWXWX010000035.1 <> na Primary Assembly 2683 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CFWXWX010000036.1 <> na Primary Assembly 2014 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CFWXWX010000037.1 <> na Primary Assembly 1532 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CFWXWX010000038.1 <> na Primary Assembly 1475 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ500763.1 <> na non-nuclear 16937 na