# Assembly name:  bPoePal1.hap1.1
# Organism name:  Poecile palustris (marsh tit)
# Taxid:          48890
# BioSample:      SAMEA118680282
# BioProject:     PRJEB122960
# Submitter:      WELLCOME SANGER INSTITUTE
# Date:           2026-09-08
# Assembly type:  haploid (haplotype 1)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    CFWYJL01
# Assembly method: various
# Genome coverage: 61x
# Sequencing technology: Oxford Nanopore,Arima2
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_987201445.1
# Linked assembly: GCA_987201385.1 (haplotype 2)
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1_HAP1	assembled-molecule	1	Chromosome	OZ501339.1	<>	na	Primary Assembly	156791643	na
SUPER_2_HAP1	assembled-molecule	2	Chromosome	OZ501340.1	<>	na	Primary Assembly	124059363	na
SUPER_3_HAP1	assembled-molecule	3	Chromosome	OZ501341.1	<>	na	Primary Assembly	120609054	na
SUPER_4_HAP1	assembled-molecule	4	Chromosome	OZ501342.1	<>	na	Primary Assembly	79561154	na
SUPER_5_HAP1	assembled-molecule	5	Chromosome	OZ501343.1	<>	na	Primary Assembly	76972822	na
SUPER_6_HAP1	assembled-molecule	6	Chromosome	OZ501344.1	<>	na	Primary Assembly	66714265	na
SUPER_7_HAP1	assembled-molecule	7	Chromosome	OZ501345.1	<>	na	Primary Assembly	43528071	na
SUPER_8_HAP1	assembled-molecule	8	Chromosome	OZ501346.1	<>	na	Primary Assembly	37729341	na
SUPER_9_HAP1	assembled-molecule	9	Chromosome	OZ501347.1	<>	na	Primary Assembly	36823770	na
SUPER_10_HAP1	assembled-molecule	10	Chromosome	OZ501348.1	<>	na	Primary Assembly	27095017	na
SUPER_11_HAP1	assembled-molecule	11	Chromosome	OZ501349.1	<>	na	Primary Assembly	23138878	na
SUPER_12_HAP1	assembled-molecule	12	Chromosome	OZ501350.1	<>	na	Primary Assembly	23045330	na
SUPER_13_HAP1	assembled-molecule	13	Chromosome	OZ501351.1	<>	na	Primary Assembly	22804263	na
SUPER_14_HAP1	assembled-molecule	14	Chromosome	OZ501352.1	<>	na	Primary Assembly	21391343	na
SUPER_15_HAP1	assembled-molecule	15	Chromosome	OZ501353.1	<>	na	Primary Assembly	19998691	na
SUPER_16_HAP1	assembled-molecule	16	Chromosome	OZ501354.1	<>	na	Primary Assembly	17859592	na
SUPER_17_HAP1	assembled-molecule	17	Chromosome	OZ501355.1	<>	na	Primary Assembly	17015035	na
SUPER_18_HAP1	assembled-molecule	18	Chromosome	OZ501356.1	<>	na	Primary Assembly	15264793	na
SUPER_19_HAP1	assembled-molecule	19	Chromosome	OZ501357.1	<>	na	Primary Assembly	13486896	na
SUPER_20_HAP1	assembled-molecule	20	Chromosome	OZ501358.1	<>	na	Primary Assembly	11856487	na
SUPER_21_HAP1	assembled-molecule	21	Chromosome	OZ501359.1	<>	na	Primary Assembly	11316109	na
SUPER_22_HAP1	assembled-molecule	22	Chromosome	OZ501360.1	<>	na	Primary Assembly	9409098	na
SUPER_23_HAP1	assembled-molecule	23	Chromosome	OZ501361.1	<>	na	Primary Assembly	9105838	na
SUPER_24_HAP1	assembled-molecule	24	Chromosome	OZ501362.1	<>	na	Primary Assembly	8346680	na
SUPER_25_HAP1	assembled-molecule	25	Chromosome	OZ501363.1	<>	na	Primary Assembly	7822750	na
SUPER_26_HAP1	assembled-molecule	26	Chromosome	OZ501364.1	<>	na	Primary Assembly	7055539	na
SUPER_27_HAP1	assembled-molecule	27	Chromosome	OZ501365.1	<>	na	Primary Assembly	6733783	na
SUPER_28_HAP1	assembled-molecule	28	Chromosome	OZ501366.1	<>	na	Primary Assembly	6630864	na
SUPER_29_HAP1	assembled-molecule	29	Chromosome	OZ501367.1	<>	na	Primary Assembly	6598292	na
SUPER_30_HAP1	assembled-molecule	30	Chromosome	OZ501368.1	<>	na	Primary Assembly	5638690	na
SUPER_31_HAP1	assembled-molecule	31	Chromosome	OZ501369.1	<>	na	Primary Assembly	5092386	na
SUPER_32_HAP1	assembled-molecule	32	Chromosome	OZ501370.1	<>	na	Primary Assembly	5010029	na
SUPER_33_HAP1	assembled-molecule	33	Chromosome	OZ501371.1	<>	na	Primary Assembly	4161391	na
SUPER_34_HAP1	assembled-molecule	34	Chromosome	OZ501372.1	<>	na	Primary Assembly	3820164	na
SUPER_35_HAP1	assembled-molecule	35	Chromosome	OZ501373.1	<>	na	Primary Assembly	3742945	na
SUPER_36_HAP1	assembled-molecule	36	Chromosome	OZ501374.1	<>	na	Primary Assembly	3341954	na
SUPER_37_HAP1	assembled-molecule	37	Chromosome	OZ501375.1	<>	na	Primary Assembly	3086561	na
SUPER_38_HAP1	assembled-molecule	38	Chromosome	OZ501376.1	<>	na	Primary Assembly	2931102	na
SUPER_39_HAP1	assembled-molecule	39	Chromosome	OZ501377.1	<>	na	Primary Assembly	1804740	na
SUPER_W_HAP1	assembled-molecule	W	Chromosome	OZ501378.1	<>	na	Primary Assembly	33349732	na
SUPER_Z_HAP1	assembled-molecule	Z	Chromosome	OZ501379.1	<>	na	Primary Assembly	82090606	na
HAP1_SCAFFOLD_44	unplaced-scaffold	na	na	CFWYJL010000001.1	<>	na	Primary Assembly	2543238	na
HAP1_SCAFFOLD_45	unplaced-scaffold	na	na	CFWYJL010000002.1	<>	na	Primary Assembly	2375602	na
HAP1_SCAFFOLD_48	unplaced-scaffold	na	na	CFWYJL010000003.1	<>	na	Primary Assembly	1172363	na
HAP1_SCAFFOLD_49	unplaced-scaffold	na	na	CFWYJL010000004.1	<>	na	Primary Assembly	1055219	na
HAP1_SCAFFOLD_50	unplaced-scaffold	na	na	CFWYJL010000005.1	<>	na	Primary Assembly	1002141	na
HAP1_SCAFFOLD_51	unplaced-scaffold	na	na	CFWYJL010000006.1	<>	na	Primary Assembly	864031	na
HAP1_SCAFFOLD_52	unplaced-scaffold	na	na	CFWYJL010000007.1	<>	na	Primary Assembly	841057	na
HAP1_SCAFFOLD_55	unplaced-scaffold	na	na	CFWYJL010000008.1	<>	na	Primary Assembly	651334	na
HAP1_SCAFFOLD_57	unplaced-scaffold	na	na	CFWYJL010000009.1	<>	na	Primary Assembly	457776	na
HAP1_SCAFFOLD_59	unplaced-scaffold	na	na	CFWYJL010000010.1	<>	na	Primary Assembly	332742	na
HAP1_SCAFFOLD_61	unplaced-scaffold	na	na	CFWYJL010000011.1	<>	na	Primary Assembly	233982	na
HAP1_SCAFFOLD_62	unplaced-scaffold	na	na	CFWYJL010000012.1	<>	na	Primary Assembly	221120	na
HAP1_SCAFFOLD_64	unplaced-scaffold	na	na	CFWYJL010000013.1	<>	na	Primary Assembly	210971	na
HAP1_SCAFFOLD_68	unplaced-scaffold	na	na	CFWYJL010000014.1	<>	na	Primary Assembly	190031	na
HAP1_SCAFFOLD_69	unplaced-scaffold	na	na	CFWYJL010000015.1	<>	na	Primary Assembly	186854	na
HAP1_SCAFFOLD_70	unplaced-scaffold	na	na	CFWYJL010000016.1	<>	na	Primary Assembly	165183	na
HAP1_SCAFFOLD_72	unplaced-scaffold	na	na	CFWYJL010000017.1	<>	na	Primary Assembly	138700	na
HAP1_SCAFFOLD_73	unplaced-scaffold	na	na	CFWYJL010000018.1	<>	na	Primary Assembly	135024	na
HAP1_SCAFFOLD_74	unplaced-scaffold	na	na	CFWYJL010000019.1	<>	na	Primary Assembly	134043	na
HAP1_SCAFFOLD_75	unplaced-scaffold	na	na	CFWYJL010000020.1	<>	na	Primary Assembly	131554	na
HAP1_SCAFFOLD_76	unplaced-scaffold	na	na	CFWYJL010000021.1	<>	na	Primary Assembly	128759	na
HAP1_SCAFFOLD_78	unplaced-scaffold	na	na	CFWYJL010000022.1	<>	na	Primary Assembly	95837	na
HAP1_SCAFFOLD_79	unplaced-scaffold	na	na	CFWYJL010000023.1	<>	na	Primary Assembly	85031	na
HAP1_SCAFFOLD_80	unplaced-scaffold	na	na	CFWYJL010000024.1	<>	na	Primary Assembly	70632	na
HAP1_SCAFFOLD_81	unplaced-scaffold	na	na	CFWYJL010000025.1	<>	na	Primary Assembly	63326	na
HAP1_SCAFFOLD_82	unplaced-scaffold	na	na	CFWYJL010000026.1	<>	na	Primary Assembly	42974	na
HAP1_SCAFFOLD_83	unplaced-scaffold	na	na	CFWYJL010000027.1	<>	na	Primary Assembly	34819	na
HAP1_SCAFFOLD_84	unplaced-scaffold	na	na	CFWYJL010000028.1	<>	na	Primary Assembly	26718	na
HAP1_SCAFFOLD_85	unplaced-scaffold	na	na	CFWYJL010000029.1	<>	na	Primary Assembly	15757	na
HAP1_SCAFFOLD_86	unplaced-scaffold	na	na	CFWYJL010000030.1	<>	na	Primary Assembly	11370	na
HAP1_SCAFFOLD_87	unplaced-scaffold	na	na	CFWYJL010000031.1	<>	na	Primary Assembly	11176	na
HAP1_SCAFFOLD_88	unplaced-scaffold	na	na	CFWYJL010000032.1	<>	na	Primary Assembly	9004	na
HAP1_SCAFFOLD_89	unplaced-scaffold	na	na	CFWYJL010000033.1	<>	na	Primary Assembly	8951	na
HAP1_SCAFFOLD_90	unplaced-scaffold	na	na	CFWYJL010000034.1	<>	na	Primary Assembly	8623	na
HAP1_SCAFFOLD_91	unplaced-scaffold	na	na	CFWYJL010000035.1	<>	na	Primary Assembly	7962	na
HAP1_SCAFFOLD_92	unplaced-scaffold	na	na	CFWYJL010000036.1	<>	na	Primary Assembly	7815	na
HAP1_SCAFFOLD_93	unplaced-scaffold	na	na	CFWYJL010000037.1	<>	na	Primary Assembly	7530	na
HAP1_SCAFFOLD_94	unplaced-scaffold	na	na	CFWYJL010000038.1	<>	na	Primary Assembly	7380	na
HAP1_SCAFFOLD_95	unplaced-scaffold	na	na	CFWYJL010000039.1	<>	na	Primary Assembly	7312	na
HAP1_SCAFFOLD_96	unplaced-scaffold	na	na	CFWYJL010000040.1	<>	na	Primary Assembly	6902	na
HAP1_SCAFFOLD_97	unplaced-scaffold	na	na	CFWYJL010000041.1	<>	na	Primary Assembly	6298	na
HAP1_SCAFFOLD_98	unplaced-scaffold	na	na	CFWYJL010000042.1	<>	na	Primary Assembly	4995	na
HAP1_SCAFFOLD_99	unplaced-scaffold	na	na	CFWYJL010000043.1	<>	na	Primary Assembly	4866	na
HAP1_SCAFFOLD_100	unplaced-scaffold	na	na	CFWYJL010000044.1	<>	na	Primary Assembly	4398	na
HAP1_SCAFFOLD_101	unplaced-scaffold	na	na	CFWYJL010000045.1	<>	na	Primary Assembly	4297	na
HAP1_SCAFFOLD_102	unplaced-scaffold	na	na	CFWYJL010000046.1	<>	na	Primary Assembly	4010	na
HAP1_SCAFFOLD_103	unplaced-scaffold	na	na	CFWYJL010000047.1	<>	na	Primary Assembly	3844	na
HAP1_SCAFFOLD_104	unplaced-scaffold	na	na	CFWYJL010000048.1	<>	na	Primary Assembly	3511	na
HAP1_SCAFFOLD_105	unplaced-scaffold	na	na	CFWYJL010000049.1	<>	na	Primary Assembly	3326	na
HAP1_SCAFFOLD_106	unplaced-scaffold	na	na	CFWYJL010000050.1	<>	na	Primary Assembly	3316	na
HAP1_SCAFFOLD_107	unplaced-scaffold	na	na	CFWYJL010000051.1	<>	na	Primary Assembly	3266	na
HAP1_SCAFFOLD_108	unplaced-scaffold	na	na	CFWYJL010000052.1	<>	na	Primary Assembly	2901	na
HAP1_SCAFFOLD_109	unplaced-scaffold	na	na	CFWYJL010000053.1	<>	na	Primary Assembly	2876	na
HAP1_SCAFFOLD_110	unplaced-scaffold	na	na	CFWYJL010000054.1	<>	na	Primary Assembly	2830	na
HAP1_SCAFFOLD_111	unplaced-scaffold	na	na	CFWYJL010000055.1	<>	na	Primary Assembly	2780	na
HAP1_SCAFFOLD_112	unplaced-scaffold	na	na	CFWYJL010000056.1	<>	na	Primary Assembly	2741	na
HAP1_SCAFFOLD_113	unplaced-scaffold	na	na	CFWYJL010000057.1	<>	na	Primary Assembly	2731	na
HAP1_SCAFFOLD_114	unplaced-scaffold	na	na	CFWYJL010000058.1	<>	na	Primary Assembly	2687	na
HAP1_SCAFFOLD_115	unplaced-scaffold	na	na	CFWYJL010000059.1	<>	na	Primary Assembly	2658	na
HAP1_SCAFFOLD_116	unplaced-scaffold	na	na	CFWYJL010000060.1	<>	na	Primary Assembly	2631	na
HAP1_SCAFFOLD_117	unplaced-scaffold	na	na	CFWYJL010000061.1	<>	na	Primary Assembly	2555	na
HAP1_SCAFFOLD_118	unplaced-scaffold	na	na	CFWYJL010000062.1	<>	na	Primary Assembly	2522	na
HAP1_SCAFFOLD_119	unplaced-scaffold	na	na	CFWYJL010000063.1	<>	na	Primary Assembly	2339	na
HAP1_SCAFFOLD_120	unplaced-scaffold	na	na	CFWYJL010000064.1	<>	na	Primary Assembly	1996	na
HAP1_SCAFFOLD_121	unplaced-scaffold	na	na	CFWYJL010000065.1	<>	na	Primary Assembly	1902	na
HAP1_SCAFFOLD_122	unplaced-scaffold	na	na	CFWYJL010000066.1	<>	na	Primary Assembly	1894	na
HAP1_SCAFFOLD_123	unplaced-scaffold	na	na	CFWYJL010000067.1	<>	na	Primary Assembly	1817	na
HAP1_SCAFFOLD_124	unplaced-scaffold	na	na	CFWYJL010000068.1	<>	na	Primary Assembly	1291	na
scaffold_MT_1	assembled-molecule	MT	Mitochondrion	OZ501380.1	<>	na	non-nuclear	16775	na