# refseq assembly genbank ncbi ucsc NC_000067.6 1 CM000994.2 1 chr1 NC_000068.7 2 CM000995.2 2 chr2 NC_000069.6 3 CM000996.2 3 chr3 NC_000070.6 4 CM000997.2 4 chr4 NC_000071.6 5 CM000998.2 5 chr5 NC_000072.6 6 CM000999.2 6 chr6 NC_000073.6 7 CM001000.2 7 chr7 NC_000074.6 8 CM001001.2 8 chr8 NC_000075.6 9 CM001002.2 9 chr9 NC_000076.6 10 CM001003.2 10 chr10 NC_000077.6 11 CM001004.2 11 chr11 NC_000078.6 12 CM001005.2 12 chr12 NC_000079.6 13 CM001006.2 13 chr13 NC_000080.6 14 CM001007.2 14 chr14 NC_000081.6 15 CM001008.2 15 chr15 NC_000082.6 16 CM001009.2 16 chr16 NC_000083.6 17 CM001010.2 17 chr17 NC_000084.6 18 CM001011.2 18 chr18 NC_000085.6 19 CM001012.2 19 chr19 NC_000086.7 X CM001013.2 X chrX NC_000087.7 Y CM001014.2 Y chrY NC_005089.1 MT AY172335.1 MT chrM NT_039192.2 129S6/SVEVTAC_MMCHR1_CTG3 GL455991.1 NT_039192v2_alt NT_039194.5 129S6/SVEVTAC_MMCHR1_CTG4 GL455992.2 NT_039194v5_alt NT_039195.1 129X1/SVJ_MMCHR1_CTG2 GL456005.1 NT_039195v1_alt NT_039198.1 129S6/SVEVTAC_MMCHR1_CTG1 GL455993.1 NT_039198v1_alt NT_039223.3 129S1/SVIMJ_MMCHR2_CTG2 GL456024.2 NT_039223v3_alt NT_039247.2 MMCHR3_NODMRKTAC_CTG1 GL456045.2 NT_039247v2_alt NT_039248.1 129S1/SVIMJ_MMCHR3_CTG3 GL456006.1 NT_039248v1_alt NT_039252.1 MMCHR3_NOD_IDD3_1 GL456048.1 NT_039252v1_alt NT_039256.1 129S1/SVIMJ_MMCHR3_CTG2 GL456007.1 NT_039256v1_alt NT_039257.4 MMCHR3_NODMRKTAC_CTG2 GL456049.2 NT_039257v4_alt NT_039291.1 129S6/SVEVTAC_MMCHR4_CTG1 GL455994.1 NT_039291v1_alt NT_039292.1 UNKNOWN_MMCHR4_CTG1 GL456064.1 NT_039292v1_alt NT_039296.1 129X1/SVJ_MMCHR4_CTG2 GL456010.1 NT_039296v1_alt NT_039334.1 129S6/SVEVTAC_MMCHR5_CTG1 GL455995.1 NT_039334v1_alt NT_039367.1 129X1/SVJ_MMCHR6_CTG3 GL456065.1 NT_039367v1_alt NT_039372.2 129X1/SVJ_MMCHR6_CTG1 GL456012.2 NT_039372v2_alt NT_039373.1 129S1/SVIMJ_MMCHR6_CTG1 GL456025.1 NT_039373v1_alt NT_039382.4 129S1/SVIMJ_MMCHR6_CTG5 GL456026.2 NT_039382v4_alt NT_039443.1 129S2/SVPAS_MMCHR7_CTG1 GL456013.1 NT_039443v1_alt NT_039469.1 129S6/SVEVTAC_MMCHR8_CTG1 GL455996.1 NT_039469v1_alt NT_039470.1 129S6/SVEVTAC_MMCHR8_CTG2 GL455997.1 NT_039470v1_alt NT_039525.1 129X1/SVJ_MMCHR11_CTG3 GL456016.1 NT_039525v1_alt NT_039593.1 A/J_MMCHR13_CTG1 GL455990.1 NT_039593v1_alt NT_039594.3 129S6/SVEVTAC_MMCHR13_CTG1 GL455999.2 NT_039594v3_alt NT_039614.1 129S1/SVIMJ_MMCHR14_CTG3 GL456019.1 NT_039614v1_alt NT_039622.1 129S6/SVEVTAC_MMCHR15_CTG1 GL456000.1 NT_039622v1_alt NT_039630.5 129X1/SVJ_MMCHR16_CTG1 GL456028.2 NT_039630v5_alt NT_039634.4 129S6/SVEVTAC_MMCHR16_CTG6 GL456001.2 NT_039634v4_alt NT_039661.4 129S6/SVEVTAC_MMCHR17_CTG1 GL456021.2 NT_039661v4_alt NT_039662.3 129X1/SVJ_MMCHR17_CTG2 GL456022.2 NT_039662v3_alt NT_039666.2 129S6/SVEVTAC_MMCHR17_CTG2 GL456002.2 NT_039666v2_alt NT_039697.1 129P2/OLAHSD_MMCHR19_CTG1 GL456079.1 NT_039697v1_alt NT_039739.2 129S6/SVEVTAC_MMCHRX_CTG2 GL456003.2 NT_039739v2_alt NT_039744.2 129S1/SVIMJ_MMCHRX_CTG3 GL456032.1 NT_039744v2_alt NT_039747.4 129S1/SVIMJ_MMCHRX_CTG7 GL456033.2 NT_039747v4_alt NT_078572.1 129S1/SVIMJ_MMCHR7_CTG1 GL456014.1 NT_078572v1_alt NT_078651.1 UNKNOWN_MMCHR10_CTG3 GL456015.1 NT_078651v1_alt NT_078683.1 129S6/SVEVTAC_MMCHR11_CTG1 GL455998.1 NT_078683v1_alt NT_080256.1 MMCHRUN_NODMRKTAC_CTG1 GL456050.1 NT_080256v1_alt NT_080257.1 129S1/SVIMJ_MMCHR3_CTG4 GL456008.1 NT_080257v1_alt NT_095534.1 BALB/C_MMCHR7_CTG1 GL455989.1 NT_095534v1_alt NT_096355.1 BALB/C_MMCHR12_CTG1 GL456068.1 NT_096355v1_alt NT_096797.1 129X1/SVJ_MMCHR14_CTG1 GL456020.1 NT_096797v1_alt NT_097336.1 UNKNOWN_MMCHR17_CTG3 GL456069.1 NT_097336v1_alt NT_099024.1 129S6/SVEVTAC_MMCHRX_CTG6 GL456004.1 NT_099024v1_alt NT_109318.2 UNKNOWN_MMCHR4_CTG7 GL456009.1 NT_109318v2_alt NT_109599.1 129S1/SVIMJ_MMCHR5_CTG5 GL456011.1 NT_109599v1_alt NT_111920.1 129S1/SVIMJ_MMCHRX_CTG10 GL456031.1 NT_111920v1_alt NT_114257.4 MMCHR3_NOD_IDD18_1 GL456042.2 NT_114257v4_alt NT_114985.3 129S1/SVIMJ_MMCHR12_CTG1 GL456017.2 NT_114985v3_alt NT_114988.1 129S1/SVIMJ_MMCHR12_CTG3 GL456074.1 NT_114988v1_alt NT_162750.1 MMCHR1_RANDOM_CTG5 GL456221.1 chr1_NT_162750v1_random NT_165784.1 RIII_MMCHR18_CTG1 GL456070.1 NT_165784v1_alt NT_165789.2 MMCHRX_RANDOM_CTG2 GL456233.1 chrX_NT_165789v2_random NT_166280.1 MMCHR1_RANDOM_CTG1 GL456210.1 chr1_NT_166280v1_random NT_166281.1 MMCHR1_RANDOM_CTG2 GL456211.1 chr1_NT_166281v1_random NT_166282.1 MMCHR1_RANDOM_CTG3 GL456212.1 chr1_NT_166282v1_random NT_166283.1 MMCHR1_RANDOM_CTG4 GL456213.1 chr1_NT_166283v1_random NT_166287.2 MMCHR3_NOD_IDD18_2 GL456044.2 NT_166287v2_alt NT_166291.1 MMCHR4UN_CTG1 GL456216.1 chr4_NT_166291v1_random NT_166293.1 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG2 GL456075.1 NT_166293v1_alt NT_166294.1 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG3 GL456076.1 NT_166294v1_alt NT_166295.1 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG4 GL456077.1 NT_166295v1_alt NT_166299.2 MMCHR4_NOD_IDD9_2 GL456053.2 NT_166299v2_alt NT_166305.2 MMCHR6_CHORI29_IDD6_1+2 GL456054.2 NT_166305v2_alt NT_166307.1 MMCHR7_RANDOM_CTG1 GL456219.1 chr7_NT_166307v1_random NT_166317.2 MMCHR11_NOD_IDD4_2 GL456060.2 NT_166317v2_alt NT_166322.1 129S7/SVEVBRD-HPRT-B-M2_MMCHR12_CTG2 GL456078.1 NT_166322v1_alt NT_166338.1 MSCHRUN_CTG1 GL456239.1 chrUn_NT_166338v1 NT_166394.1 AKR/J_MMCHRY_CTG1 GL456080.1 NT_166394v1_alt NT_166396.1 CAST/EI_MMCHRY_CTG1 GL456071.1 NT_166396v1_alt NT_166397.1 AKR/J_MMCHRY_CTG2 GL456081.1 NT_166397v1_alt NT_166398.1 CAST/EI_MMCHRY_CTG2 GL456072.1 NT_166398v1_alt NT_166399.1 CAST/EI_MMCHRY_CTG3 GL456073.1 NT_166399v1_alt NT_166400.1 AKR/J_MMCHRY_CTG3 GL456082.1 NT_166400v1_alt NT_166433.1 RIII_MMCHR12_CTG1 GL456349.1 NT_166433v1_alt NT_166434.1 MMCHR4UN_CTG3 GL456350.1 chr4_NT_166434v1_random NT_166438.1 MMCHR5_RANDOM_CTG4 GL456354.1 chr5_NT_166438v1_random NT_166443.1 MSCHRUN_CTG13 GL456359.1 chrUn_NT_166443v1 NT_166444.1 MSCHRUN_CTG14 GL456360.1 chrUn_NT_166444v1 NT_166450.1 MSCHRUN_CTG21 GL456366.1 chrUn_NT_166450v1 NT_166451.1 MSCHRUN_CTG2 GL456367.1 chrUn_NT_166451v1 NT_166452.1 MSCHRUN_CTG22 GL456368.1 chrUn_NT_166452v1 NT_166454.1 MSCHRUN_CTG19 GL456370.1 chrUn_NT_166454v1 NT_166456.1 MSCHRUN_CTG16 GL456372.1 chrUn_NT_166456v1 NT_166462.1 MSCHRUN_CTG3 GL456378.1 chrUn_NT_166462v1 NT_166463.1 MSCHRUN_CTG20 GL456379.1 chrUn_NT_166463v1 NT_166465.1 MSCHRUN_CTG4 GL456381.1 chrUn_NT_166465v1 NT_166466.1 MSCHRUN_CTG5 GL456382.1 chrUn_NT_166466v1 NT_166467.1 MSCHRUN_CTG6 GL456383.1 chrUn_NT_166467v1 NT_166469.1 MSCHRUN_CTG7 GL456385.1 chrUn_NT_166469v1 NT_166471.1 MSCHRUN_CTG17 GL456387.1 chrUn_NT_166471v1 NT_166473.1 MSCHRUN_CTG18 GL456389.1 chrUn_NT_166473v1 NT_166474.1 MSCHRUN_CTG9 GL456390.1 chrUn_NT_166474v1 NT_166476.1 MSCHRUN_CTG10 GL456392.1 chrUn_NT_166476v1 NT_166477.1 MSCHRUN_CTG11 GL456393.1 chrUn_NT_166477v1 NT_166478.1 MSCHRUN_CTG12 GL456394.1 chrUn_NT_166478v1 NT_166480.1 MSCHRUN_CTG15 GL456396.1 chrUn_NT_166480v1 NT_186999.1 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG5 JH584268.1 NT_186999v1_alt NT_187000.1 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG6 JH584269.1 NT_187000v1_alt NT_187001.1 129S7/SVEVBRD-HPRT-B-M2_MMCHR15_CTG1 JH584270.1 NT_187001v1_alt NT_187002.1 MMCHR6_CHORI29_IDD6_3 JH584264.1 NT_187002v1_alt NT_187003.1 MMCHR11_CHORI29_IDD4_2Q JH584265.1 NT_187003v1_alt NT_187004.1 MMCHR17_CHO_IDD1 JH584266.1 NT_187004v1_alt NT_187005.1 MMCHR17_CHORI29_IDD16_1 JH584267.1 NT_187005v1_alt NT_187006.1 129S1/SVIMJ_MMCHR13_CTG1 JH584305.1 NT_187006v1_alt NT_187007.1 129S1/SVIMJ_MMCHR16_CTG1 JH584306.1 NT_187007v1_alt NT_187008.1 129S1/SVIMJ_MMCHR16_CTG2 JH584307.1 NT_187008v1_alt NT_187009.1 129S1/SVIMJ_MMCHR17_CTG2 JH590470.1 NT_187009v1_alt NT_187010.1 129S1/SVIMJ_MMCHR17_CTG3 JH584308.1 NT_187010v1_alt NT_187011.1 129S1/SVIMJ_MMCHR17_CTG4 JH584309.1 NT_187011v1_alt NT_187012.1 129S6/SVEVTAC_MMCHR16_CTG1 JH584310.1 NT_187012v1_alt NT_187013.1 129S6/SVEVTAC_MMCHR16_CTG2 JH584311.1 NT_187013v1_alt NT_187014.1 129S6/SVEVTAC_MMCHR16_CTG3 JH584312.1 NT_187014v1_alt NT_187015.1 129S6/SVEVTAC_MMCHR16_CTG4 JH584313.1 NT_187015v1_alt NT_187016.1 129S6/SVEVTAC_MMCHR16_CTG5 JH584314.1 NT_187016v1_alt NT_187017.1 129X1/SVJ_MMCHR1_CTG1 JH584315.1 NT_187017v1_alt NT_187018.1 UNKNOWN_MMCHR19_CTG2 JH584319.1 NT_187018v1_alt NT_187019.1 MMCHR1_NOD_IDD5_1 JH584320.1 NT_187019v1_alt NT_187020.1 MMCHR1_NOD_IDD5_3 JH584321.1 NT_187020v1_alt NT_187021.1 MMCHR1_NOD_IDD5_4 JH584322.1 NT_187021v1_alt NT_187022.1 MMCHR3_NOD_IDD10_1 JH584323.1 NT_187022v1_alt NT_187023.1 MMCHR4_NOD_IDD9_1 JH584324.1 NT_187023v1_alt NT_187024.1 MMCHR4_NOD_IDD9_1M JH584325.1 NT_187024v1_alt NT_187025.1 MMCHR4_NOD_IDD9_3 JH584326.1 NT_187025v1_alt NT_187026.1 MMCHR11_NOD_IDD4_1 JH584327.1 NT_187026v1_alt NT_187027.1 MMCHR17_NOD_IDD1 JH584328.1 NT_187027v1_alt NT_187028.1 CAST/EI_MMCHR11_CTG1 JH584316.1 NT_187028v1_alt NT_187029.1 CAST/EI_MMCHR11_CTG3 JH584317.1 NT_187029v1_alt NT_187030.1 CAST/EI_MMCHR18_CTG1 JH584318.1 NT_187030v1_alt NT_187052.1 MMCHR4UN_CTG2 JH584292.1 chr4_NT_187052v1_random NT_187053.1 MMCHR4UN_CTG4 JH584293.1 chr4_NT_187053v1_random NT_187054.1 MMCHR4UN_CTG5 JH584294.1 chr4_NT_187054v1_random NT_187055.1 MMCHR4UN_CTG6 JH584295.1 chr4_NT_187055v1_random NT_187056.1 MMCHR5_RANDOM_CTG1 JH584296.1 chr5_NT_187056v1_random NT_187057.1 MMCHR5_RANDOM_CTG2 JH584297.1 chr5_NT_187057v1_random NT_187058.1 MMCHR5_RANDOM_CTG3 JH584298.1 chr5_NT_187058v1_random NT_187059.1 MMCHR5_RANDOM_CTG5 JH584299.1 chr5_NT_187059v1_random NT_187060.1 MMCHRY_CTGU1 JH584300.1 chrY_NT_187060v1_random NT_187061.1 MMCHRY_CTGU2 JH584301.1 chrY_NT_187061v1_random NT_187062.1 MMCHRY_CTGU3 JH584302.1 chrY_NT_187062v1_random NT_187063.1 MMCHRY_CTGU4 JH584303.1 chrY_NT_187063v1_random NT_187064.1 MSCHRUN_CTG23 JH584304.1 chrUn_NT_187064v1 NW_004058050.1 MG4136_PATCH JH792826.1 NW_004058050v1_fix NW_004058051.1 MG4212_PATCH JH792827.1 NW_004058051v1_fix NW_004058052.1 MG4151_PATCH JH792828.1 NW_004058052v1_fix NW_004058053.1 MG3835_PATCH JH792829.1 NW_004058053v1_fix NW_004058054.1 MG153_PATCH JH792830.1 NW_004058054v1_fix NW_004058055.2 MG4214_PATCH JH792831.2 NW_004058055v2_fix NW_004058056.1 MG4209_PATCH JH792832.1 NW_004058056v1_fix NW_004058057.1 MG4211_PATCH JH792833.1 NW_004058057v1_fix NW_004058058.1 MG4213_PATCH JH792834.1 NW_004058058v1_fix NW_004450259.3 MG132_PATCH KB469738.3 NW_004450259v3_fix NW_004450260.1 MG3829_PATCH KB469739.1 NW_004450260v1_fix NW_004450261.1 MG4180_PATCH KB469740.1 NW_004450261v1_fix NW_004450262.2 MG3833_MG4220_PATCH KB469741.2 NW_004450262v2_fix NW_004450263.1 MG4222_MG3908_PATCH KB469742.1 NW_004450263v1_fix NW_006763128.1 MMCHR1_CHORI29_IDD5_1 KK082441.1 NW_006763128v1_fix NW_006763129.1 MG184_PATCH KK082442.1 NW_006763129v1_fix NW_006763130.1 MG4237_PATCH KK082443.1 NW_006763130v1_fix NW_012132900.1 MG4248_PATCH KQ030484.1 NW_012132900v1_fix NW_012132901.1 MG3561_PATCH KQ030485.1 NW_012132901v1_fix NW_012132902.1 MG3562_PATCH KQ030486.1 NW_012132902v1_fix NW_012132903.1 MG3609_PATCH KQ030487.1 NW_012132903v1_fix NW_012132904.1 MG4265_PATCH KQ030488.1 NW_012132904v1_fix NW_012132905.1 MG4266_PATCH KQ030489.1 NW_012132905v1_fix NW_012132906.1 MG117_PATCH KQ030490.1 NW_012132906v1_fix NW_012132907.1 MG4264_PATCH KQ030491.1 NW_012132907v1_fix NW_012132908.1 MG4259_PATCH KQ030492.1 NW_012132908v1_fix NW_012132909.2 MG4261_PATCH KQ030493.2 NW_012132909v2_fix NW_012132910.1 MG4249_PATCH KQ030494.1 NW_012132910v1_fix NW_012132911.1 MG3231_PATCH KQ030495.1 NW_012132911v1_fix NW_012132912.1 MG4254_PATCH KQ030496.1 NW_012132912v1_fix NW_012132913.1 MG4255_PATCH KQ030497.1 NW_012132913v1_fix NW_016097312.1 MG4281_PATCH KV575232.1 NW_016097312v1_fix NW_016097313.1 MG3999_PATCH KV575233.1 NW_016097313v1_fix NW_016097314.1 MG3496_PATCH KV575234.1 NW_016097314v1_fix NW_016097315.1 MG191_PATCH KV575235.1 NW_016097315v1_fix NW_016097316.1 MG3836_PATCH KV575236.1 NW_016097316v1_fix NW_016097317.1 MG171_PATCH KV575237.1 NW_016097317v1_fix NW_016097318.1 MG3251_PATCH KV575238.1 NW_016097318v1_fix NW_016097319.1 MG3172_PATCH KV575239.1 NW_016097319v1_fix NW_016097320.1 MG190_MG3751_PATCH KV575240.1 NW_016097320v1_fix NW_016097321.1 MG4288_PATCH KV575241.1 NW_016097321v1_fix NW_016097322.1 MG65_PATCH KV575242.1 NW_016097322v1_fix NW_019168503.1 MG3714_PATCH KZ289064.1 NW_019168503v1_fix NW_019168504.1 MG3712_PATCH KZ289065.1 NW_019168504v1_fix NW_019168505.1 MG89_PATCH KZ289066.1 NW_019168505v1_fix NW_019168506.1 MG4243_PATCH KZ289067.1 NW_019168506v1_fix NW_019168507.1 MG4310_MG4311_PATCH KZ289068.1 NW_019168507v1_fix NW_019168508.1 MG51_PATCH KZ289069.1 NW_019168508v1_fix NW_019168509.1 MG3618_PATCH KZ289070.1 NW_019168509v1_fix NW_019168510.1 MG4138_PATCH KZ289071.1 NW_019168510v1_fix NW_019168511.1 MG3530_PATCH KZ289072.1 NW_019168511v1_fix NW_019168512.1 WSB/EIJ_MMCHR11_CTG1 KZ289073.1 NW_019168512v1_fix NW_019168513.1 WSB/EIJ_MMCHR11_CTG2 KZ289074.1 NW_019168513v1_fix NW_019168514.1 WSB/EIJ_MMCHR11_CTG3 KZ289075.1 NW_019168514v1_fix NW_019168515.1 MG4308_PATCH KZ289076.1 NW_019168515v1_fix NW_019168516.1 PWK/PHJ_MMCHR11_CTG1 KZ289077.1 NW_019168516v1_fix NW_019168517.1 PWK/PHJ_MMCHR11_CTG2 KZ289078.1 NW_019168517v1_fix NW_019168518.1 PWK/PHJ_MMCHR11_CTG3 KZ289079.1 NW_019168518v1_fix NW_019168519.1 CAST/EI_MMCHR11_CTG4 KZ289080.1 NW_019168519v1_fix NW_019168520.1 CAST/EI_MMCHR11_CTG5 KZ289081.1 NW_019168520v1_fix NW_019168521.1 MG3490_PATCH KZ289082.1 NW_019168521v1_fix NW_019168522.1 MG4162_PATCH KZ289083.1 NW_019168522v1_fix NW_019168523.1 MG3627_PATCH KZ289084.1 NW_019168523v1_fix NW_019168524.1 MG3648_PATCH KZ289085.1 NW_019168524v1_fix NW_019168525.1 MG74_PATCH KZ289086.1 NW_019168525v1_fix NW_019168526.1 MG4198_PATCH KZ289087.1 NW_019168526v1_fix NW_019168527.1 MG209_PATCH KZ289088.1 NW_019168527v1_fix NW_019168528.1 MG4200_PATCH KZ289089.1 NW_019168528v1_fix NW_019168529.1 MG3699_PATCH KZ289090.1 NW_019168529v1_fix NW_019168530.1 MG3700_PATCH KZ289091.1 NW_019168530v1_fix NW_019168531.1 MG104_PATCH KZ289092.1 NW_019168531v1_fix NW_019168532.1 MG3656_PATCH KZ289093.1 NW_019168532v1_fix NW_019168533.1 MG3683_PATCH KZ289094.1 NW_019168533v1_fix NW_019168534.1 MG3686_PATCH KZ289095.1 NW_019168534v1_fix