track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.assembly.bb type bigBed 6 html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.assembly searchIndex name searchTrix ixIxx/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database group map track gap longLabel AGP gap shortLabel Gap (AGP defined) visibility dense color 0,0,0 bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.gap.bb type bigBed 4 group map html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.gap track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.gc5Base.bw html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.rmsk.bb maxWindowToDraw 5000000 html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.simpleRepeat.bb html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.simpleRepeat track refSeqComposite compositeTrack on shortLabel NCBI RefSeq longLabel RefSeq gene predictions from NCBI group genes visibility pack type bigBed dragAndDrop subTracks allButtonPair on dataVersion INSDC submitter (2021-08-17) html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.refSeqComposite priority 2 track ncbiRefSeq parent refSeqComposite on color 12,12,120 altColor 120,12,12 shortLabel RefSeq All type bigGenePred labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.ncbiRefSeq.ix bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.ncbiRefSeq.bb longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*) idXref ncbiRefSeqLink mrnaAcc name baseColorUseCds given baseColorDefault genomicCodons priority 1 track ncbiRefSeqPredicted color 12,12,120 parent refSeqComposite on shortLabel RefSeq Predicted longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*) type bigGenePred labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.ncbiRefSeqPredicted.ix idXref ncbiRefSeqLink mrnaAcc name bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.ncbiRefSeqPredicted.bb baseColorUseCds given baseColorDefault genomicCodons priority 3 track ncbiRefSeqPsl priority 5 parent refSeqComposite off shortLabel RefSeq Alignments longLabel RefSeq Alignments of RNAs type bigPsl searchIndex name bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.bigPsl.bb indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsMaxZoom 10000.0 showCdsAllScales . baseColorDefault diffCodons pslSequence no baseColorUseSequence lfExtra baseColorUseCds table given color 0,0,0 track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.windowMasker.bb html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.allGaps.bb html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.augustus.bb html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.xenoRefGene.bb labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.xenoRefGene.ix html html/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5.xenoRefGene