# Assembly name: P.trichocarpa_v4.1 # Organism name: Populus trichocarpa (black cottonwood) # Isolate: Nisqually-1 # Taxid: 3694 # BioSample: SAMN02953657 # BioProject: PRJNA10772 # Submitter: US DOE Joint Genome Institute (JGI # Date: 2022-10-20 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: AARH04 # Assembly method: MECAT v. 1 # Genome coverage: 133.2x # Sequencing technology: PacBio Sequel I # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000002775.4 # RefSeq assembly accession: GCF_000002775.5 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000000955.4 GCF_000000955.5 Primary Assembly ## GCF_000234565.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chr01 assembled-molecule 1 Chromosome CM009290.2 = NC_037285.2 Primary Assembly 49788581 na Chr02 assembled-molecule 2 Chromosome CM009291.2 = NC_037286.2 Primary Assembly 25242375 na Chr03 assembled-molecule 3 Chromosome CM009292.2 = NC_037287.2 Primary Assembly 21678634 na Chr04 assembled-molecule 4 Chromosome CM009293.2 = NC_037288.2 Primary Assembly 24140038 na Chr05 assembled-molecule 5 Chromosome CM009294.2 = NC_037289.2 Primary Assembly 24981103 na Chr06 assembled-molecule 6 Chromosome CM009295.2 = NC_037290.2 Primary Assembly 27516652 na Chr07 assembled-molecule 7 Chromosome CM009296.2 = NC_037291.2 Primary Assembly 15561420 na Chr08 assembled-molecule 8 Chromosome CM009297.2 = NC_037292.2 Primary Assembly 19195260 na Chr09 assembled-molecule 9 Chromosome CM009298.2 = NC_037293.2 Primary Assembly 12987399 na Chr10 assembled-molecule 10 Chromosome CM009299.2 = NC_037294.2 Primary Assembly 22799081 na Chr11 assembled-molecule 11 Chromosome CM009300.2 = NC_037295.2 Primary Assembly 19288771 na Chr12 assembled-molecule 12 Chromosome CM009301.2 = NC_037296.2 Primary Assembly 15589050 na Chr13 assembled-molecule 13 Chromosome CM009302.2 = NC_037297.2 Primary Assembly 15705617 na Chr14 assembled-molecule 14 Chromosome CM009303.2 = NC_037298.2 Primary Assembly 17801709 na Chr15 assembled-molecule 15 Chromosome CM009304.2 = NC_037299.2 Primary Assembly 15231745 na Chr16 assembled-molecule 16 Chromosome CM009305.2 = NC_037300.2 Primary Assembly 14619816 na Chr17 assembled-molecule 17 Chromosome CM009306.2 = NC_037301.2 Primary Assembly 15189755 na Chr18 assembled-molecule 18 Chromosome CM009307.2 = NC_037302.2 Primary Assembly 16264003 na Chr19 assembled-molecule 19 Chromosome CM009308.2 = NC_037303.2 Primary Assembly 15623655 na scaffold_25 unplaced-scaffold na na MU628133.1 = NW_026291139.1 Primary Assembly 640640 na scaffold_45 unplaced-scaffold na na MU628134.1 = NW_026291140.1 Primary Assembly 362030 na scaffold_67 unplaced-scaffold na na MU628135.1 = NW_026291141.1 Primary Assembly 298400 na scaffold_104 unplaced-scaffold na na MU628136.1 = NW_026291142.1 Primary Assembly 239390 na scaffold_502 unplaced-scaffold na na MU628137.1 = NW_026291143.1 Primary Assembly 126651 na scaffold_509 unplaced-scaffold na na MU628138.1 = NW_026291144.1 Primary Assembly 125876 na scaffold_522 unplaced-scaffold na na MU628139.1 = NW_026291145.1 Primary Assembly 125073 na scaffold_780 unplaced-scaffold na na MU628140.1 = NW_026291146.1 Primary Assembly 104571 na scaffold_820 unplaced-scaffold na na MU628141.1 = NW_026291147.1 Primary Assembly 102332 na scaffold_1549 unplaced-scaffold na na MU628142.1 = NW_026291148.1 Primary Assembly 75560 na scaffold_1697 unplaced-scaffold na na MU628143.1 = NW_026291149.1 Primary Assembly 72059 na scaffold_1865 unplaced-scaffold na na MU628144.1 = NW_026291150.1 Primary Assembly 68284 na scaffold_1944 unplaced-scaffold na na MU628145.1 = NW_026291151.1 Primary Assembly 66818 na scaffold_2151 unplaced-scaffold na na MU628146.1 = NW_026291152.1 Primary Assembly 63019 na scaffold_2281 unplaced-scaffold na na MU628147.1 = NW_026291153.1 Primary Assembly 60697 na scaffold_2555 unplaced-scaffold na na MU628148.1 = NW_026291154.1 Primary Assembly 56646 na scaffold_2798 unplaced-scaffold na na MU628149.1 = NW_026291155.1 Primary Assembly 52914 na scaffold_3255 unplaced-scaffold na na MU628150.1 = NW_026291156.1 Primary Assembly 45437 na scaffold_3421 unplaced-scaffold na na MU628151.1 = NW_026291157.1 Primary Assembly 40476 na scaffold_3435 unplaced-scaffold na na MU628152.1 = NW_026291158.1 Primary Assembly 40109 na scaffold_3488 unplaced-scaffold na na MU628153.1 = NW_026291159.1 Primary Assembly 36978 na scaffold_3518 unplaced-scaffold na na MU628154.1 = NW_026291160.1 Primary Assembly 35470 na scaffold_3588 unplaced-scaffold na na MU628155.1 = NW_026291161.1 Primary Assembly 28433 na scaffold_3607 unplaced-scaffold na na MU628156.1 = NW_026291162.1 Primary Assembly 24495 na scaffold_3611 unplaced-scaffold na na MU628157.1 = NW_026291163.1 Primary Assembly 23661 na scaffold_3618 unplaced-scaffold na na MU628158.1 = NW_026291164.1 Primary Assembly 21309 na scaffold_3621 unplaced-scaffold na na MU628159.1 = NW_026291165.1 Primary Assembly 20187 na Pltd assembled-molecule Pltd Chloroplast na <> NC_009143.1 non-nuclear 157033 na