RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.huVuFp/RM_31861.FriAug231349542024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1724446194
Database = /dev/shm/rModeler.huVuFp/GCF_000003225.2_ASM322v1   - Sequences = 5
  - Bases = 8358425
Storage Throughput = excellent ( 1190.61 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 8358312 bp ( 8357811 non ambiguous )
   - Num Contigs Represented = 5
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:04:17 (hh:mm:ss) Elapsed Time
Round Time: 00:05:18 (hh:mm:ss) Elapsed Time : 40 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:27 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       2451 repeats masked totaling 434024 bp(s).
   - TE Masking time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 8358312 bp
       Num Contigs Represented = 5
       Non ambiguous bp:
             Initial: 8357811 bp
             After Masking: 7840523 bp
             Masked: 6.19 % 
 -- Input Database Coverage: 8358312 bp out of 8358425 bp ( 100.00 % )
Sampling Time: 00:00:32 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 22366
Comparison Time: 00:07:14 (hh:mm:ss) Elapsed Time, 25554 HSPs Collected
Number of families returned by RECON: 895
Round Time: 00:08:23 (hh:mm:ss) Elapsed Time : 2 families discovered.

RepeatScout/RECON discovery complete: 42 families found


Classification Time: 00:00:48 (hh:mm:ss) Elapsed Time


Program Time: 00:14:29 (hh:mm:ss) Elapsed Time