RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.GbVkIl/RM_7681.SatOct121859532024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1728784731
Database = /dev/shm/rModeler.GbVkIl/GCF_000196175.1_ASM19617v1   - Sequences = 1
  - Bases = 3782950
Storage Throughput = excellent ( 1166.93 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 3782800 bp ( 3782800 non ambiguous )
   - Num Contigs Represented = 1
   - Sequence extraction : 00:00:06 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:02:43 (hh:mm:ss) Elapsed Time
Round Time: 00:06:15 (hh:mm:ss) Elapsed Time : 2 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:05 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       44 repeats masked totaling 4086 bp(s).
   - TE Masking time 00:00:33 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 3782800 bp
       Num Contigs Represented = 1
       Non ambiguous bp:
             Initial: 3782800 bp
             After Masking: 3777159 bp
             Masked: 0.15 % 
 -- Input Database Coverage: 3782800 bp out of 3782950 bp ( 100.00 % )
Sampling Time: 00:02:14 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 4465
Comparison Time: 01:36:13 (hh:mm:ss) Elapsed Time, 1988 HSPs Collected
Number of families returned by RECON: 472
Round Time: 01:44:12 (hh:mm:ss) Elapsed Time : 2 families discovered.

RepeatScout/RECON discovery complete: 4 families found


Classification Time: 00:02:28 (hh:mm:ss) Elapsed Time


Program Time: 01:52:55 (hh:mm:ss) Elapsed Time