# Assembly name: ICSASG_v2 # Organism name: Salmo salar (Atlantic salmon) # Infraspecific name: breed=double haploid # Isolate: Sally # Sex: female # Taxid: 8030 # BioSample: SAMN02749551 # BioProject: PRJNA72713 # Submitter: International Cooperation to Sequence the Atlantic Salmon Genome # Date: 2015-06-10 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: AGKD04 # Assembly method: MaSuRCA v. 2.0.3 # Expected final version: yes # Genome coverage: 206.0x # Sequencing technology: Illumina HiSeq; PacBio; Sanger; Illumina GAIIx # Excluded from RefSeq: superseded by newer assembly for species # GenBank assembly accession: GCA_000233375.4 # RefSeq assembly accession: GCF_000233375.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000233385.4 GCF_000233385.1 Primary Assembly ## GCF_000030575.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name ssa01 assembled-molecule ssa01 Chromosome CM003279.1 = NC_027300.1 Primary Assembly 159038749 na ssa02 assembled-molecule ssa02 Chromosome CM003280.1 = NC_027301.1 Primary Assembly 72943711 na ssa03 assembled-molecule ssa03 Chromosome CM003281.1 = NC_027302.1 Primary Assembly 92503428 na ssa04 assembled-molecule ssa04 Chromosome CM003282.1 = NC_027303.1 Primary Assembly 82398023 na ssa05 assembled-molecule ssa05 Chromosome CM003283.1 = NC_027304.1 Primary Assembly 80503876 na ssa06 assembled-molecule ssa06 Chromosome CM003284.1 = NC_027305.1 Primary Assembly 87043187 na ssa07 assembled-molecule ssa07 Chromosome CM003285.1 = NC_027306.1 Primary Assembly 58785265 na ssa08 assembled-molecule ssa08 Chromosome CM003286.1 = NC_027307.1 Primary Assembly 26434011 na ssa09 assembled-molecule ssa09 Chromosome CM003287.1 = NC_027308.1 Primary Assembly 141712163 na ssa10 assembled-molecule ssa10 Chromosome CM003288.1 = NC_027309.1 Primary Assembly 116138521 na ssa11 assembled-molecule ssa11 Chromosome CM003289.1 = NC_027310.1 Primary Assembly 93888508 na ssa12 assembled-molecule ssa12 Chromosome CM003290.1 = NC_027311.1 Primary Assembly 91880962 na ssa13 assembled-molecule ssa13 Chromosome CM003291.1 = NC_027312.1 Primary Assembly 107758822 na ssa14 assembled-molecule ssa14 Chromosome CM003292.1 = NC_027313.1 Primary Assembly 93901823 na ssa15 assembled-molecule ssa15 Chromosome CM003293.1 = NC_027314.1 Primary Assembly 103963436 na ssa16 assembled-molecule ssa16 Chromosome CM003294.1 = NC_027315.1 Primary Assembly 87796322 na ssa17 assembled-molecule ssa17 Chromosome CM003295.1 = NC_027316.1 Primary Assembly 57682537 na ssa18 assembled-molecule ssa18 Chromosome CM003296.1 = NC_027317.1 Primary Assembly 70695409 na ssa19 assembled-molecule ssa19 Chromosome CM003297.1 = NC_027318.1 Primary Assembly 82978132 na ssa20 assembled-molecule ssa20 Chromosome CM003298.1 = NC_027319.1 Primary Assembly 86795997 na ssa21 assembled-molecule ssa21 Chromosome CM003299.1 = NC_027320.1 Primary Assembly 58021487 na ssa22 assembled-molecule ssa22 Chromosome CM003300.1 = NC_027321.1 Primary Assembly 63420196 na ssa23 assembled-molecule ssa23 Chromosome CM003301.1 = NC_027322.1 Primary Assembly 49854004 na ssa24 assembled-molecule ssa24 Chromosome CM003302.1 = NC_027323.1 Primary Assembly 48650976 na ssa25 assembled-molecule ssa25 Chromosome CM003303.1 = NC_027324.1 Primary Assembly 51481326 na ssa26 assembled-molecule ssa26 Chromosome CM003304.1 = NC_027325.1 Primary Assembly 47900953 na ssa27 assembled-molecule ssa27 Chromosome CM003305.1 = NC_027326.1 Primary Assembly 43943985 na ssa28 assembled-molecule ssa28 Chromosome CM003306.1 = NC_027327.1 Primary Assembly 39600944 na ssa29 assembled-molecule ssa29 Chromosome CM003307.1 = NC_027328.1 Primary Assembly 42488238 na scf_jcf1000045931_0-0_0_0 unplaced-scaffold na na AGKD04009448.1 <> na Primary Assembly na na scf_jcf1000533363_0-0_0_0 unplaced-scaffold na na AGKD04009449.1 <> na Primary Assembly na na scf_jcf1000683570_0-0_0_0 unplaced-scaffold na na AGKD04009450.1 <> na Primary Assembly na na scf_jcf1000192610_0-0_0_0 unplaced-scaffold na na AGKD04009451.1 <> na Primary Assembly na na scf_jcf1000483260_74605-226225_gap_46_1272 unplaced-scaffold na na AGKD04009452.1 <> na Primary Assembly na na scf_jcf1001078505_0-0_1_0 unplaced-scaffold na na AGKD04009453.1 <> na Primary Assembly na na scf_jcf1001243618_0-0_0_0 unplaced-scaffold na na AGKD04009454.1 <> na Primary Assembly na na scf_jcf1000417432_0-0_0_0 unplaced-scaffold na na AGKD04009455.1 <> na Primary Assembly na na scf_jcf1000408011_0-0_0_0 unplaced-scaffold na na AGKD04009456.1 <> na Primary Assembly na na scf_jcf1000453400_685496-772741_gap_20_82371 unplaced-scaffold na na AGKD04009457.1 <> na Primary Assembly na na scf_ccf1000001140_0-0_0_0 unplaced-scaffold na na AGKD04009458.1 <> na Primary Assembly na na scf_jcf1000541921_236446-318880_gap_50_20 unplaced-scaffold na na AGKD04009459.1 <> na Primary Assembly na na scf_jcf1000007308_0-0_0_0 unplaced-scaffold na na AGKD04009460.1 <> na Primary Assembly na na scf_jcf1000373957_0-0_0_0 unplaced-scaffold na na AGKD04009461.1 <> na Primary Assembly na na scf_jcf1000053053_0-0_1_0 unplaced-scaffold na na AGKD04009462.1 <> na Primary Assembly na na scf_jcf1000142208_0-0_0_0 unplaced-scaffold na na AGKD04009463.1 <> na Primary Assembly na na scf_ccf1000001300_0-0_0_0 unplaced-scaffold na na AGKD04009464.1 <> na Primary Assembly na na scf_jcf1001218422_0-0_0_0 unplaced-scaffold na na AGKD04009465.1 <> na Primary Assembly na na scf_jcf1001194230_0-0_0_0 unplaced-scaffold na na AGKD04009466.1 <> na Primary Assembly na na scf_jcf1001203639_0-0_0_0 unplaced-scaffold na na AGKD04009467.1 <> na Primary Assembly na na scf_jcf1001208054_0-0_0_0 unplaced-scaffold na na AGKD04009468.1 <> na Primary Assembly na na scf_jcf1001117203_0-0_0_0 unplaced-scaffold na na AGKD04009469.1 <> na Primary Assembly na na scf_jcf1000326228_0-0_0_0 unplaced-scaffold na na AGKD04009470.1 <> na Primary Assembly na na scf_jcf1000012999_0-0_0_0 unplaced-scaffold na na AGKD04009471.1 <> na Primary Assembly na na scf_jcf1000033503_0-0_0_0 unplaced-scaffold na na AGKD04009472.1 <> na Primary Assembly na na scf_jcf1000109368_120808-166733_gap_1255_50 unplaced-scaffold na na AGKD04009473.1 <> na Primary Assembly na na scf_jcf1000021349_0-0_0_0 unplaced-scaffold na na AGKD04009474.1 <> na Primary Assembly na na scf_jcf1001257140_0-0_0_0 unplaced-scaffold na na AGKD04009475.1 <> na Primary Assembly na na scf_jcf1000113987_0-0_0_0 unplaced-scaffold na na AGKD04009476.1 <> na Primary Assembly na na scf_jcf1000235204_0-0_0_0 unplaced-scaffold na na AGKD04009477.1 <> na Primary Assembly na na scf_jcf1000256666_0-0_0_0 unplaced-scaffold na na AGKD04009478.1 <> na Primary Assembly na na scf_jcf1000298128_0-0_0_0 unplaced-scaffold na na AGKD04009479.1 <> na Primary Assembly na na scf_jcf1000697051_0-0_0_0 unplaced-scaffold na na AGKD04009480.1 <> na Primary Assembly na na scf_jcf1000277230_0-0_0_0 unplaced-scaffold na na AGKD04009481.1 <> na Primary Assembly na na scf_jcf1000224717_0-0_0_0 unplaced-scaffold na na AGKD04009482.1 <> na Primary Assembly na na scf_jcf1000495996_0-0_0_0 unplaced-scaffold na na AGKD04009483.1 <> na Primary Assembly na na scf_jcf1000392669_4165725-4203721_gap_3883_20 unplaced-scaffold na na AGKD04009484.1 <> na Primary Assembly na na scf_jcf1000958233_0-0_0_0 unplaced-scaffold na na AGKD04009485.1 <> na Primary Assembly na na scf_jcf1000185531_3636319-3672727_gap_53_35 unplaced-scaffold na na AGKD04009486.1 <> na Primary Assembly na na scf_jcf1000088765_0-0_0_0 unplaced-scaffold na na AGKD04009487.1 <> na Primary Assembly na na scf_jcf1000314995_214207-248530_20_770 unplaced-scaffold na na AGKD04009488.1 <> na Primary Assembly na na scf_jcf1001248588_0-0_0_0 unplaced-scaffold na na AGKD04009489.1 <> na Primary Assembly na na scf_jcf1000305506_480067-512797_gap_0_0 unplaced-scaffold na na AGKD04009490.1 <> na Primary Assembly na na scf_jcf1000929607_0-0_0_0 unplaced-scaffold na na AGKD04009491.1 <> na Primary Assembly na na scf_jcf1000334123_26493-58361_gap_129_548 unplaced-scaffold na na AGKD04009492.1 <> na Primary Assembly na na scf_jcf1000384193_82973-114454_gap_30681_50 unplaced-scaffold na na AGKD04009493.1 <> na Primary Assembly na na scf_jcf1000816074_52139-82323_gap_20_4725 unplaced-scaffold na na AGKD04009494.1 <> na Primary Assembly na na scf_jcf1000743207_0-0_0_0 unplaced-scaffold na na AGKD04009495.1 <> na Primary Assembly na na scf_jcf1000514908_0-0_0_0 unplaced-scaffold na na AGKD04009496.1 <> na Primary Assembly na na scf_jcf1000890687_22479-50955_gap_50_20 unplaced-scaffold na na AGKD04009497.1 <> na Primary Assembly na na scf_jcf1000522732_0-0_0_0 unplaced-scaffold na na AGKD04009498.1 <> na Primary Assembly na na scf_jcf1000961009_0-0_0_0 unplaced-scaffold na na AGKD04009499.1 <> na Primary Assembly na na scf_jcf1000431238_0-0_0_0 unplaced-scaffold na na AGKD04009500.1 <> na Primary Assembly na na scf_jcf1000307869_52283-78329_gap_50_50 unplaced-scaffold na na AGKD04009501.1 <> na Primary Assembly na na scf_jcf1000357187_0-0_0_0 unplaced-scaffold na na AGKD04009502.1 <> na Primary Assembly na na scf_jcf1000172758_0-0_0_0 unplaced-scaffold na na AGKD04009503.1 <> na Primary Assembly na na scf_jcf1000158084_36342-60236_gap_20_50 unplaced-scaffold na na AGKD04009504.1 <> na Primary Assembly na na scf_jcf1000119343_174225-198099_gap_28_20 unplaced-scaffold na na AGKD04009505.1 <> na Primary Assembly na na scf_jcf1000307198_0-0_0_0 unplaced-scaffold na na AGKD04009506.1 <> na Primary Assembly na na scf_jcf1000442721_0-0_0_0 unplaced-scaffold na na AGKD04009507.1 <> na Primary Assembly na na scf_jcf1000181971_0-0_0_0 unplaced-scaffold na na AGKD04009508.1 <> na Primary Assembly na na scf_jcf1001021104_0-0_0_0 unplaced-scaffold na na AGKD04009509.1 <> na Primary Assembly na na scf_jcf1000263175_497493-519414_1038_20 unplaced-scaffold na na AGKD04009510.1 <> na Primary Assembly na na scf_jcf1000644715_0-0_0_0 unplaced-scaffold na na AGKD04009511.1 <> na Primary Assembly na na scf_jcf1000357562_0-0_0_0 unplaced-scaffold na na AGKD04009512.1 <> na Primary Assembly na na scf_jcf1000098014_1818803-1839993_gap_1115_20 unplaced-scaffold na na AGKD04009513.1 <> na Primary Assembly na na scf_jcf1001220059_1842558-1863562_12814_20 unplaced-scaffold na na AGKD04009514.1 <> na Primary Assembly na na scf_jcf1000210754_0-0_0_0 unplaced-scaffold na na AGKD04009515.1 <> na Primary Assembly na na scf_jcf1000098335_111057-130961_gap_1885_558 unplaced-scaffold na na AGKD04009516.1 <> na Primary Assembly na na scf_jcf1000246267_0-0_0_0 unplaced-scaffold na na AGKD04009517.1 <> na Primary Assembly na na scf_jcf1000689403_0-0_0_0 unplaced-scaffold na na AGKD04009518.1 <> na Primary Assembly na na scf_jcf1000158084_4476240-4495571_gap_50_49 unplaced-scaffold na na AGKD04009519.1 <> na Primary Assembly na na scf_jcf1000623245_32736-51652_gap_20_50 unplaced-scaffold na na AGKD04009520.1 <> na Primary Assembly na na scf_jcf1000083047_0-0_0_0 unplaced-scaffold na na AGKD04009521.1 <> na Primary Assembly na na scf_jcf1000604957_0-0_0_0 unplaced-scaffold na na AGKD04009522.1 <> na Primary Assembly na na scf_jcf1000031251_97125-115666_gap_52_50 unplaced-scaffold na na AGKD04009523.1 <> na Primary Assembly na na scf_jcf1000174471_0-0_0_0 unplaced-scaffold na na AGKD04009524.1 <> na Primary Assembly na na scf_jcf1000710616_1582479-1600721_gap_2369_20 unplaced-scaffold na na AGKD04009525.1 <> na Primary Assembly na na scf_jcf1000658742_1048857-1066400_gap_50_20 unplaced-scaffold na na AGKD04009526.1 <> na Primary Assembly na na scf_jcf1000720134_0-0_0_0 unplaced-scaffold na na AGKD04009527.1 <> na Primary Assembly na na scf_jcf1000687369_0-0_0_0 unplaced-scaffold na na AGKD04009528.1 <> na Primary Assembly na na scf_jcf1000071781_0-0_0_0 unplaced-scaffold na na AGKD04009529.1 <> na Primary Assembly na na scf_jcf1000040939_0-0_0_0 unplaced-scaffold na na AGKD04009530.1 <> na Primary Assembly na na scf_jcf1001029408_0-0_0_0 unplaced-scaffold na na AGKD04009531.1 <> na Primary Assembly na na scf_jcf1000320947_0-0_0_0 unplaced-scaffold na na AGKD04009532.1 <> na Primary Assembly na na scf_jcf1000334797_0-0_0_0 unplaced-scaffold na na AGKD04009533.1 <> na Primary Assembly na na scf_jcf1000265277_0-0_0_0 unplaced-scaffold na na AGKD04009534.1 <> na Primary Assembly na na scf_jcf1000724135_0-0_0_0 unplaced-scaffold na na AGKD04009535.1 <> na Primary Assembly na na scf_jcf1001116712_0-0_0_0 unplaced-scaffold na na AGKD04009536.1 <> na Primary Assembly na na scf_jcf1000319859_0-0_0_0 unplaced-scaffold na na AGKD04009537.1 <> na Primary Assembly na na scf_jcf1000099112_0-0_0_0 unplaced-scaffold na na AGKD04009538.1 <> na Primary Assembly na na scf_jcf1000168012_0-0_0_0 unplaced-scaffold na na AGKD04009539.1 <> na Primary Assembly na na scf_jcf1001249880_0-0_0_0 unplaced-scaffold na na AGKD04009540.1 <> na Primary Assembly na na scf_jcf1000396452_0-0_0_0 unplaced-scaffold na na AGKD04009541.1 <> na Primary Assembly na na scf_jcf1000553243_0-0_0_0 unplaced-scaffold na na AGKD04009542.1 <> na Primary Assembly na na scf_jcf1000668000_0-0_0_0 unplaced-scaffold na na AGKD04009543.1 <> na Primary Assembly na na scf_jcf1000874181_0-0_0_0 unplaced-scaffold na na AGKD04009544.1 <> na Primary Assembly na na scf_jcf1000627498_86542-101110_gap_137_789 unplaced-scaffold na na AGKD04009545.1 <> na Primary Assembly na na scf_jcf1001100955_0-0_0_0 unplaced-scaffold na na AGKD04009546.1 <> na Primary Assembly na na scf_jcf1001004499_0-0_0_0 unplaced-scaffold na na AGKD04009547.1 <> na Primary Assembly na na scf_jcf1000377591_0-0_0_0 unplaced-scaffold na na AGKD04009548.1 <> na Primary Assembly na na scf_jcf1000450843_0-0_0_0 unplaced-scaffold na na AGKD04009549.1 <> na Primary Assembly na na scf_jcf1000307869_645717-659676_gap_20_50 unplaced-scaffold na na AGKD04009550.1 <> na Primary Assembly na na scf_jcf1000154635_4963521-4977429_gap_385_20 unplaced-scaffold na na AGKD04009551.1 <> na Primary Assembly na na scf_jcf1000014450_0-0_0_0 unplaced-scaffold na na AGKD04009552.1 <> na Primary Assembly na na scf_jcf1001028165_288164-301756_gap_20_20 unplaced-scaffold na na AGKD04009553.1 <> na Primary Assembly na na scf_jcf1000640349_571846-585428_gap_20_50 unplaced-scaffold na na AGKD04009554.1 <> na Primary Assembly na na scf_jcf1000161693_0-0_0_0 unplaced-scaffold na na AGKD04009555.1 <> na Primary Assembly na na scf_jcf1000532054_0-0_0_0 unplaced-scaffold na na AGKD04009556.1 <> na Primary Assembly na na scf_jcf1000773671_0-0_0_0 unplaced-scaffold na na AGKD04009557.1 <> na Primary Assembly na na scf_jcf1000715570_0-0_0_0 unplaced-scaffold na na AGKD04009558.1 <> na Primary Assembly na na scf_jcf1000565778_0-0_0_0 unplaced-scaffold na na AGKD04009559.1 <> na Primary Assembly na na scf_jcf1001097148_0-0_0_0 unplaced-scaffold na na AGKD04009560.1 <> na Primary Assembly na na scf_jcf1000427148_0-0_0_0 unplaced-scaffold na na AGKD04009561.1 <> na Primary Assembly na na scf_jcf1000610516_0-0_0_0 unplaced-scaffold na na AGKD04009562.1 <> na Primary Assembly na na scf_jcf1000819868_0-0_0_0 unplaced-scaffold na na AGKD04009563.1 <> na Primary Assembly na na scf_jcf1000293893_0-0_0_0 unplaced-scaffold na na AGKD04009564.1 <> na Primary Assembly na na scf_jcf1000222988_0-0_0_0 unplaced-scaffold na na AGKD04009565.1 <> na Primary Assembly na na scf_jcf1000839200_0-0_0_0 unplaced-scaffold na na AGKD04009566.1 <> na Primary Assembly na na scf_jcf1000483260_231184-243576_gap_50_50 unplaced-scaffold na na AGKD04009567.1 <> na Primary Assembly na na scf_jcf1001070547_0-0_0_0 unplaced-scaffold na na AGKD04009568.1 <> na Primary Assembly na na scf_jcf1000015389_38956-51269_gap_1880_4027 unplaced-scaffold na na AGKD04009569.1 <> na Primary Assembly na na scf_jcf1000392289_0-0_0_0 unplaced-scaffold na na AGKD04009570.1 <> na Primary Assembly na na scf_jcf1000289681_0-0_0_0 unplaced-scaffold na na AGKD04009571.1 <> na Primary Assembly na na scf_jcf1000135673_11693339-11705546_gap_942_20 unplaced-scaffold na na AGKD04009572.1 <> na Primary Assembly na na scf_jcf1000084874_1206494-1218540_gap_193_2563 unplaced-scaffold na na AGKD04009573.1 <> na Primary Assembly na na scf_jcf1000246162_63011-75008_gap_2000_1319 unplaced-scaffold na na AGKD04009574.1 <> na Primary Assembly na na scf_jcf1001183394_0-0_0_0 unplaced-scaffold na na AGKD04009575.1 <> na Primary Assembly na na scf_jcf1000675986_0-0_0_0 unplaced-scaffold na na AGKD04009576.1 <> na Primary Assembly na na scf_jcf1001010515_0-0_0_0 unplaced-scaffold na na AGKD04009577.1 <> na Primary Assembly na na scf_jcf1000681935_0-0_0_0 unplaced-scaffold na na AGKD04009578.1 <> na Primary Assembly na na scf_jcf1001146634_0-0_0_0 unplaced-scaffold na na AGKD04009579.1 <> na Primary Assembly na na scf_jcf1000444615_0-0_0_0 unplaced-scaffold na na AGKD04009580.1 <> na Primary Assembly na na scf_jcf1000945674_0-0_0_0 unplaced-scaffold na na AGKD04009581.1 <> na Primary Assembly na na scf_jcf1000001290_0-0_0_0 unplaced-scaffold na na AGKD04009582.1 <> na Primary Assembly na na scf_jcf1000311446_273320-284203_gap_20_50 unplaced-scaffold na na AGKD04009583.1 <> na Primary Assembly na na scf_jcf1001113961_13653-24247_gap_50_50 unplaced-scaffold na na AGKD04009584.1 <> na Primary Assembly na na scf_jcf1001051765_0-0_0_0 unplaced-scaffold na na AGKD04009585.1 <> na Primary Assembly na na scf_jcf1000768650_0-0_0_0 unplaced-scaffold na na AGKD04009586.1 <> na Primary Assembly na na scf_jcf1000194034_0-0_0_0 unplaced-scaffold na na AGKD04009587.1 <> na Primary Assembly na na scf_jcf1000133915_0-0_0_0 unplaced-scaffold na na AGKD04009588.1 <> na Primary Assembly na na scf_jcf1001216179_3309237-3319623_gap_48_50 unplaced-scaffold na na AGKD04009589.1 <> na Primary Assembly na na scf_jcf1001029873_0-0_0_0 unplaced-scaffold na na AGKD04009590.1 <> na Primary Assembly na na scf_jcf1000198725_0-0_0_0 unplaced-scaffold na na AGKD04009591.1 <> na Primary Assembly na na scf_jcf1000381050_0-0_0_0 unplaced-scaffold na na AGKD04009592.1 <> na Primary Assembly na na scf_jcf1000318689_0-0_0_0 unplaced-scaffold na na AGKD04009593.1 <> na Primary Assembly na na scf_jcf1000759333_0-0_0_0 unplaced-scaffold na na AGKD04009594.1 <> na Primary Assembly na na scf_jcf1001255085_0-0_0_0 unplaced-scaffold na na AGKD04009595.1 <> na Primary Assembly na na scf_jcf1000003784_1928524-1937844_gap_609_24 unplaced-scaffold na na AGKD04009596.1 <> na Primary Assembly na na scf_jcf1000972148_0-0_0_0 unplaced-scaffold na na AGKD04009597.1 <> na Primary Assembly na na 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