# Assembly name: ASM24287v3 # Organism name: Candidatus Nitrosopumilus salarius BD31 (marine archaeal group 1 strain BD31) # Infraspecific name: strain=BD31 # Taxid: 859350 # BioSample: SAMN00016669 # BioProject: PRJNA50075 # Submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative # Date: 2012-05-09 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: AEXL02 # Assembly method: Newbler v. 2.23 # Genome coverage: 99x # Sequencing technology: 454 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000242875.3 # RefSeq assembly accession: GCF_000242875.2 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000242885.3 GCF_000242885.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name contig00001 unplaced-scaffold na na AEXL02000001.1 = NZ_AEXL02000001.1 Primary Assembly 6311 na contig00002 unplaced-scaffold na na AEXL02000002.1 = NZ_AEXL02000002.1 Primary Assembly 2648 na contig00003 unplaced-scaffold na na AEXL02000003.1 = NZ_AEXL02000003.1 Primary Assembly 1623 na contig00004 unplaced-scaffold na na AEXL02000004.1 = NZ_AEXL02000004.1 Primary Assembly 751 na contig00006 unplaced-scaffold na na AEXL02000005.1 = NZ_AEXL02000005.1 Primary Assembly 2072 na contig00007 unplaced-scaffold na na AEXL02000006.1 = NZ_AEXL02000006.1 Primary Assembly 1508 na contig00008 unplaced-scaffold na na AEXL02000007.1 = NZ_AEXL02000007.1 Primary Assembly 3213 na contig00009 unplaced-scaffold na na AEXL02000008.1 = NZ_AEXL02000008.1 Primary Assembly 1488 na contig00010 unplaced-scaffold na na AEXL02000009.1 = NZ_AEXL02000009.1 Primary Assembly 881 na contig00011 unplaced-scaffold na na AEXL02000010.1 = NZ_AEXL02000010.1 Primary Assembly 1369 na contig00012 unplaced-scaffold na na AEXL02000011.1 = NZ_AEXL02000011.1 Primary Assembly 14589 na contig00013 unplaced-scaffold na na AEXL02000012.1 = NZ_AEXL02000012.1 Primary Assembly 1785 na contig00014 unplaced-scaffold na na AEXL02000013.1 = NZ_AEXL02000013.1 Primary Assembly 513 na contig00015 unplaced-scaffold na na AEXL02000014.1 = NZ_AEXL02000014.1 Primary Assembly 15153 na contig00016 unplaced-scaffold na na AEXL02000015.1 = NZ_AEXL02000015.1 Primary Assembly 6951 na contig00017 unplaced-scaffold na na AEXL02000016.1 = NZ_AEXL02000016.1 Primary Assembly 59181 na contig00018 unplaced-scaffold na na AEXL02000017.1 = NZ_AEXL02000017.1 Primary Assembly 686 na contig00019 unplaced-scaffold na na AEXL02000018.1 = NZ_AEXL02000018.1 Primary Assembly 1470 na contig00020 unplaced-scaffold na na AEXL02000019.1 = NZ_AEXL02000019.1 Primary Assembly 511 na contig00021 unplaced-scaffold na na AEXL02000020.1 = NZ_AEXL02000020.1 Primary Assembly 641 na contig00022 unplaced-scaffold na na AEXL02000021.1 = NZ_AEXL02000021.1 Primary Assembly 10479 na contig00023 unplaced-scaffold na na AEXL02000022.1 = NZ_AEXL02000022.1 Primary Assembly 832 na contig00024 unplaced-scaffold na na AEXL02000023.1 = NZ_AEXL02000023.1 Primary Assembly 91508 na contig00025 unplaced-scaffold na na AEXL02000024.1 = NZ_AEXL02000024.1 Primary Assembly 21684 na contig00026 unplaced-scaffold na na AEXL02000025.1 = NZ_AEXL02000025.1 Primary Assembly 518 na contig00027 unplaced-scaffold na na AEXL02000026.1 = NZ_AEXL02000026.1 Primary Assembly 3209 na contig00029 unplaced-scaffold na na AEXL02000027.1 = NZ_AEXL02000027.1 Primary Assembly 704 na contig00030 unplaced-scaffold na na AEXL02000028.1 = NZ_AEXL02000028.1 Primary Assembly 1497 na contig00031 unplaced-scaffold na na AEXL02000029.1 = NZ_AEXL02000029.1 Primary Assembly 823 na contig00032 unplaced-scaffold na na AEXL02000030.1 = NZ_AEXL02000030.1 Primary Assembly 27797 na contig00033 unplaced-scaffold na na AEXL02000031.1 = NZ_AEXL02000031.1 Primary Assembly 4849 na contig00034 unplaced-scaffold na na AEXL02000032.1 = NZ_AEXL02000032.1 Primary Assembly 995 na contig00035 unplaced-scaffold na na AEXL02000033.1 = NZ_AEXL02000033.1 Primary Assembly 501 na contig00037 unplaced-scaffold na na AEXL02000034.1 = NZ_AEXL02000034.1 Primary Assembly 1341 na contig00038 unplaced-scaffold na na AEXL02000035.1 = NZ_AEXL02000035.1 Primary Assembly 970 na contig00039 unplaced-scaffold na na AEXL02000036.1 = NZ_AEXL02000036.1 Primary Assembly 1698 na contig00040 unplaced-scaffold na na AEXL02000037.1 = NZ_AEXL02000037.1 Primary Assembly 5875 na contig00041 unplaced-scaffold na na AEXL02000038.1 = NZ_AEXL02000038.1 Primary Assembly 635 na contig00042 unplaced-scaffold na na AEXL02000039.1 = NZ_AEXL02000039.1 Primary Assembly 563 na contig00043 unplaced-scaffold na na AEXL02000040.1 = NZ_AEXL02000040.1 Primary Assembly 981 na contig00044 unplaced-scaffold na na AEXL02000041.1 = NZ_AEXL02000041.1 Primary Assembly 6321 na contig00045 unplaced-scaffold na na AEXL02000042.1 = NZ_AEXL02000042.1 Primary Assembly 4347 na contig00046 unplaced-scaffold na na AEXL02000043.1 = NZ_AEXL02000043.1 Primary Assembly 1186 na contig00047 unplaced-scaffold na na AEXL02000044.1 = NZ_AEXL02000044.1 Primary Assembly 1147 na contig00048 unplaced-scaffold na na AEXL02000045.1 = NZ_AEXL02000045.1 Primary Assembly 25006 na contig00049 unplaced-scaffold na na AEXL02000046.1 = NZ_AEXL02000046.1 Primary Assembly 3745 na contig00052 unplaced-scaffold na na AEXL02000047.1 = NZ_AEXL02000047.1 Primary Assembly 527 na contig00053 unplaced-scaffold na na AEXL02000048.1 = NZ_AEXL02000048.1 Primary Assembly 2149 na contig00054 unplaced-scaffold na na AEXL02000049.1 = NZ_AEXL02000049.1 Primary Assembly 1634 na contig00055 unplaced-scaffold na na AEXL02000050.1 = NZ_AEXL02000050.1 Primary Assembly 521 na contig00056 unplaced-scaffold na na AEXL02000051.1 = NZ_AEXL02000051.1 Primary Assembly 18704 na contig00057 unplaced-scaffold na na AEXL02000052.1 = NZ_AEXL02000052.1 Primary Assembly 1527 na contig00058 unplaced-scaffold na na AEXL02000053.1 = NZ_AEXL02000053.1 Primary Assembly 20357 na contig00059 unplaced-scaffold na na AEXL02000054.1 = NZ_AEXL02000054.1 Primary Assembly 584 na contig00060 unplaced-scaffold na na AEXL02000055.1 = NZ_AEXL02000055.1 Primary Assembly 3696 na contig00062 unplaced-scaffold na na AEXL02000056.1 = NZ_AEXL02000056.1 Primary Assembly 4732 na contig00063 unplaced-scaffold na na AEXL02000057.1 = NZ_AEXL02000057.1 Primary Assembly 1251 na contig00065 unplaced-scaffold na na AEXL02000058.1 = NZ_AEXL02000058.1 Primary Assembly 853 na contig00066 unplaced-scaffold na na AEXL02000059.1 = NZ_AEXL02000059.1 Primary Assembly 920 na contig00067 unplaced-scaffold na na AEXL02000060.1 = NZ_AEXL02000060.1 Primary Assembly 15886 na contig00068 unplaced-scaffold na na AEXL02000061.1 = NZ_AEXL02000061.1 Primary Assembly 9921 na contig00069 unplaced-scaffold na na AEXL02000062.1 = NZ_AEXL02000062.1 Primary Assembly 32680 na contig00071 unplaced-scaffold na na AEXL02000063.1 = NZ_AEXL02000063.1 Primary Assembly 4518 na contig00072 unplaced-scaffold na na AEXL02000064.1 = NZ_AEXL02000064.1 Primary Assembly 2791 na contig00073 unplaced-scaffold na na AEXL02000065.1 = NZ_AEXL02000065.1 Primary Assembly 3331 na contig00074 unplaced-scaffold na na AEXL02000066.1 = NZ_AEXL02000066.1 Primary Assembly 3873 na contig00075 unplaced-scaffold na na AEXL02000067.1 = NZ_AEXL02000067.1 Primary Assembly 16164 na contig00076 unplaced-scaffold na na AEXL02000068.1 = NZ_AEXL02000068.1 Primary Assembly 640 na contig00077 unplaced-scaffold na na AEXL02000069.1 = NZ_AEXL02000069.1 Primary Assembly 11937 na contig00078 unplaced-scaffold na na AEXL02000070.1 = NZ_AEXL02000070.1 Primary Assembly 2203 na contig00079 unplaced-scaffold na na AEXL02000071.1 = NZ_AEXL02000071.1 Primary Assembly 1424 na contig00080 unplaced-scaffold na na AEXL02000072.1 = NZ_AEXL02000072.1 Primary Assembly 6402 na contig00081 unplaced-scaffold na na AEXL02000073.1 = NZ_AEXL02000073.1 Primary Assembly 5951 na contig00082 unplaced-scaffold na na AEXL02000074.1 = NZ_AEXL02000074.1 Primary Assembly 7670 na contig00083 unplaced-scaffold na na AEXL02000075.1 = NZ_AEXL02000075.1 Primary Assembly 71449 na contig00084 unplaced-scaffold na na AEXL02000076.1 = NZ_AEXL02000076.1 Primary Assembly 2203 na contig00085 unplaced-scaffold na na AEXL02000077.1 = NZ_AEXL02000077.1 Primary Assembly 1272 na contig00086 unplaced-scaffold na na AEXL02000078.1 = NZ_AEXL02000078.1 Primary Assembly 7472 na contig00087 unplaced-scaffold na na AEXL02000079.1 = NZ_AEXL02000079.1 Primary Assembly 2882 na contig00088 unplaced-scaffold na na AEXL02000080.1 = NZ_AEXL02000080.1 Primary Assembly 2318 na contig00089 unplaced-scaffold na na AEXL02000081.1 = NZ_AEXL02000081.1 Primary Assembly 4988 na contig00091 unplaced-scaffold na na AEXL02000082.1 = NZ_AEXL02000082.1 Primary Assembly 7561 na contig00092 unplaced-scaffold na na AEXL02000083.1 = NZ_AEXL02000083.1 Primary Assembly 9541 na contig00094 unplaced-scaffold na na AEXL02000084.1 = NZ_AEXL02000084.1 Primary Assembly 516 na contig00095 unplaced-scaffold na na AEXL02000085.1 = NZ_AEXL02000085.1 Primary Assembly 1042 na contig00096 unplaced-scaffold na na AEXL02000086.1 = NZ_AEXL02000086.1 Primary Assembly 725 na contig00097 unplaced-scaffold na na AEXL02000087.1 = NZ_AEXL02000087.1 Primary Assembly 54578 na contig00098 unplaced-scaffold na na AEXL02000088.1 = NZ_AEXL02000088.1 Primary Assembly 4010 na contig00099 unplaced-scaffold na na AEXL02000089.1 = NZ_AEXL02000089.1 Primary Assembly 18146 na contig00104 unplaced-scaffold na na AEXL02000090.1 = NZ_AEXL02000090.1 Primary Assembly 158716 na contig00106 unplaced-scaffold na na AEXL02000091.1 = NZ_AEXL02000091.1 Primary Assembly 12694 na contig00108 unplaced-scaffold na na AEXL02000092.1 = NZ_AEXL02000092.1 Primary Assembly 2186 na contig00109 unplaced-scaffold na na AEXL02000093.1 = NZ_AEXL02000093.1 Primary Assembly 4300 na contig00110 unplaced-scaffold na na AEXL02000094.1 = NZ_AEXL02000094.1 Primary Assembly 5808 na contig00111 unplaced-scaffold na na AEXL02000095.1 = NZ_AEXL02000095.1 Primary Assembly 6173 na contig00114 unplaced-scaffold na na AEXL02000096.1 = NZ_AEXL02000096.1 Primary Assembly 7276 na contig00116 unplaced-scaffold na na AEXL02000097.1 = NZ_AEXL02000097.1 Primary Assembly 708 na contig00118 unplaced-scaffold na na AEXL02000098.1 = NZ_AEXL02000098.1 Primary Assembly 43032 na contig00120 unplaced-scaffold na na AEXL02000099.1 = NZ_AEXL02000099.1 Primary Assembly 2231 na contig00121 unplaced-scaffold na na AEXL02000100.1 = NZ_AEXL02000100.1 Primary Assembly 3002 na contig00122 unplaced-scaffold na na AEXL02000101.1 = NZ_AEXL02000101.1 Primary Assembly 14874 na contig00126 unplaced-scaffold na na AEXL02000102.1 = NZ_AEXL02000102.1 Primary Assembly 8811 na contig00128 unplaced-scaffold na na AEXL02000103.1 = NZ_AEXL02000103.1 Primary Assembly 4385 na contig00130 unplaced-scaffold na na AEXL02000104.1 = NZ_AEXL02000104.1 Primary Assembly 1912 na contig00133 unplaced-scaffold na na AEXL02000105.1 = NZ_AEXL02000105.1 Primary Assembly 7221 na contig00134 unplaced-scaffold na na AEXL02000106.1 = NZ_AEXL02000106.1 Primary Assembly 2743 na contig00140 unplaced-scaffold na na AEXL02000107.1 = NZ_AEXL02000107.1 Primary Assembly 1264 na contig00146 unplaced-scaffold na na AEXL02000108.1 = NZ_AEXL02000108.1 Primary Assembly 47481 na contig00148 unplaced-scaffold na na AEXL02000109.1 = NZ_AEXL02000109.1 Primary Assembly 10850 na contig00149 unplaced-scaffold na na AEXL02000110.1 = NZ_AEXL02000110.1 Primary Assembly 2301 na contig00150 unplaced-scaffold na na AEXL02000111.1 = NZ_AEXL02000111.1 Primary Assembly 9955 na contig00152 unplaced-scaffold na na AEXL02000112.1 = NZ_AEXL02000112.1 Primary Assembly 1536 na contig00153 unplaced-scaffold na na AEXL02000113.1 = NZ_AEXL02000113.1 Primary Assembly 7768 na contig00154 unplaced-scaffold na na AEXL02000114.1 = NZ_AEXL02000114.1 Primary Assembly 7379 na contig00155 unplaced-scaffold na na AEXL02000115.1 = NZ_AEXL02000115.1 Primary Assembly 577 na contig00156 unplaced-scaffold na na AEXL02000116.1 = NZ_AEXL02000116.1 Primary Assembly 3476 na contig00157 unplaced-scaffold na na AEXL02000117.1 = NZ_AEXL02000117.1 Primary Assembly 981 na contig00160 unplaced-scaffold na na AEXL02000118.1 = NZ_AEXL02000118.1 Primary Assembly 17559 na contig00161 unplaced-scaffold na na AEXL02000119.1 = NZ_AEXL02000119.1 Primary Assembly 15440 na contig00162 unplaced-scaffold na na AEXL02000120.1 = NZ_AEXL02000120.1 Primary Assembly 47075 na contig00165 unplaced-scaffold na na AEXL02000121.1 = NZ_AEXL02000121.1 Primary Assembly 8321 na contig00167 unplaced-scaffold na na AEXL02000122.1 = NZ_AEXL02000122.1 Primary Assembly 1766 na contig00168 unplaced-scaffold na na AEXL02000123.1 = NZ_AEXL02000123.1 Primary Assembly 2765 na contig00169 unplaced-scaffold na na AEXL02000124.1 = NZ_AEXL02000124.1 Primary Assembly 1658 na contig00173 unplaced-scaffold na na AEXL02000125.1 = NZ_AEXL02000125.1 Primary Assembly 1737 na contig00175 unplaced-scaffold na na AEXL02000126.1 = NZ_AEXL02000126.1 Primary Assembly 28330 na contig00178 unplaced-scaffold na na AEXL02000127.1 = NZ_AEXL02000127.1 Primary Assembly 13596 na contig00179 unplaced-scaffold na na AEXL02000128.1 = NZ_AEXL02000128.1 Primary Assembly 9682 na contig00180 unplaced-scaffold na na AEXL02000129.1 = NZ_AEXL02000129.1 Primary Assembly 1197 na contig00181 unplaced-scaffold na na AEXL02000130.1 = NZ_AEXL02000130.1 Primary Assembly 32104 na contig00183 unplaced-scaffold na na AEXL02000131.1 = NZ_AEXL02000131.1 Primary Assembly 6941 na contig00184 unplaced-scaffold na na AEXL02000132.1 = NZ_AEXL02000132.1 Primary Assembly 6255 na contig00186 unplaced-scaffold na na AEXL02000133.1 = NZ_AEXL02000133.1 Primary Assembly 1021 na contig00187 unplaced-scaffold na na AEXL02000134.1 = NZ_AEXL02000134.1 Primary Assembly 3286 na contig00189 unplaced-scaffold na na AEXL02000135.1 = NZ_AEXL02000135.1 Primary Assembly 27690 na contig00190 unplaced-scaffold na na AEXL02000136.1 = NZ_AEXL02000136.1 Primary Assembly 606 na contig00192 unplaced-scaffold na na AEXL02000137.1 = NZ_AEXL02000137.1 Primary Assembly 4759 na contig00194 unplaced-scaffold na na AEXL02000138.1 = NZ_AEXL02000138.1 Primary Assembly 55925 na contig00198 unplaced-scaffold na na AEXL02000139.1 = NZ_AEXL02000139.1 Primary Assembly 1673 na contig00199 unplaced-scaffold na na AEXL02000140.1 = NZ_AEXL02000140.1 Primary Assembly 774 na contig00200 unplaced-scaffold na na AEXL02000141.1 = NZ_AEXL02000141.1 Primary Assembly 9277 na contig00201 unplaced-scaffold na na AEXL02000142.1 = NZ_AEXL02000142.1 Primary Assembly 871 na contig00202 unplaced-scaffold na na AEXL02000143.1 = NZ_AEXL02000143.1 Primary Assembly 1569 na contig00204 unplaced-scaffold na na AEXL02000144.1 = NZ_AEXL02000144.1 Primary Assembly 11269 na contig00211 unplaced-scaffold na na AEXL02000145.1 = NZ_AEXL02000145.1 Primary Assembly 846 na contig00215 unplaced-scaffold na na AEXL02000146.1 = NZ_AEXL02000146.1 Primary Assembly 1255 na contig00217 unplaced-scaffold na na AEXL02000147.1 = NZ_AEXL02000147.1 Primary Assembly 4260 na contig00218 unplaced-scaffold na na AEXL02000148.1 = NZ_AEXL02000148.1 Primary Assembly 716 na contig00224 unplaced-scaffold na na AEXL02000149.1 = NZ_AEXL02000149.1 Primary Assembly 7129 na contig00225 unplaced-scaffold na na AEXL02000150.1 = NZ_AEXL02000150.1 Primary Assembly 27803 na contig00231 unplaced-scaffold na na AEXL02000151.1 = NZ_AEXL02000151.1 Primary Assembly 983 na contig00232 unplaced-scaffold na na AEXL02000152.1 = NZ_AEXL02000152.1 Primary Assembly 1163 na contig00235 unplaced-scaffold na na AEXL02000153.1 = NZ_AEXL02000153.1 Primary Assembly 5395 na contig00253 unplaced-scaffold na na AEXL02000154.1 = NZ_AEXL02000154.1 Primary Assembly 1286 na contig00271 unplaced-scaffold na na AEXL02000155.1 = NZ_AEXL02000155.1 Primary Assembly 841 na contig00272 unplaced-scaffold na na AEXL02000156.1 = NZ_AEXL02000156.1 Primary Assembly 3202 na contig00274 unplaced-scaffold na na AEXL02000157.1 = NZ_AEXL02000157.1 Primary Assembly 792 na contig00276 unplaced-scaffold na na AEXL02000158.1 = NZ_AEXL02000158.1 Primary Assembly 4846 na contig00277 unplaced-scaffold na na AEXL02000159.1 = NZ_AEXL02000159.1 Primary Assembly 1932 na contig00278 unplaced-scaffold na na AEXL02000160.1 = NZ_AEXL02000160.1 Primary Assembly 1825 na contig00279 unplaced-scaffold na na AEXL02000161.1 = NZ_AEXL02000161.1 Primary Assembly 47053 na contig00283 unplaced-scaffold na na AEXL02000162.1 = NZ_AEXL02000162.1 Primary Assembly 882 na contig00288 unplaced-scaffold na na AEXL02000163.1 = NZ_AEXL02000163.1 Primary Assembly 1337 na contig00294 unplaced-scaffold na na AEXL02000164.1 = NZ_AEXL02000164.1 Primary Assembly 543 na contig00298 unplaced-scaffold na na AEXL02000165.1 = NZ_AEXL02000165.1 Primary Assembly 716 na contig00299 unplaced-scaffold na na AEXL02000166.1 = NZ_AEXL02000166.1 Primary Assembly 1659 na contig00305 unplaced-scaffold na na AEXL02000167.1 = NZ_AEXL02000167.1 Primary Assembly 817 na contig00306 unplaced-scaffold na na AEXL02000168.1 = NZ_AEXL02000168.1 Primary Assembly 41398 na contig00308 unplaced-scaffold na na AEXL02000169.1 = NZ_AEXL02000169.1 Primary Assembly 666 na contig00316 unplaced-scaffold na na AEXL02000170.1 = NZ_AEXL02000170.1 Primary Assembly 3296 na contig00332 unplaced-scaffold na na AEXL02000171.1 = NZ_AEXL02000171.1 Primary Assembly 3426 na