hub GCF_000331145.1 genome assembly shortLabel chickpea longLabel chickpea/Cicer arietinum/GCF_000331145.1_ASM33114v1 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_000331145.1_ASM33114v1.description.html genome GCF_000331145.1 taxId 3827 groups groups.txt description chickpea twoBitPath GCF_000331145.1.2bit twoBitBptUrl GCF_000331145.1.2bit.bpt chromSizes GCF_000331145.1.chrom.sizes.txt chromAliasBb GCF_000331145.1.chromAlias.bb chromAuthority ucsc organism ASM33114v1 Jan. 2013 defaultPos NC_021165.1:19821299-19831299 scientificName Cicer arietinum htmlPath html/GCF_000331145.1_ASM33114v1.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/331/145/GCF_000331145.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/331/145/GCF_000331145.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/331/145/GCF_000331145.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.assembly.bb type bigBed 6 html html/GCF_000331145.1_ASM33114v1.assembly searchIndex name searchTrix ixIxx/GCF_000331145.1_ASM33114v1.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track gap longLabel AGP gap shortLabel Gap (AGP defined) visibility dense color 0,0,0 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.gap.bb type bigBed 4 group map html html/GCF_000331145.1_ASM33114v1.gap track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000331145.1_ASM33114v1.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.gc5Base.bw html html/GCF_000331145.1_ASM33114v1.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_000331145.1_ASM33114v1.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCF_000331145.1_ASM33114v1.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_000331145.1_ASM33114v1.tandemDups.bb type bigBed 12 track repeatMasker compositeTrack on shortLabel RepeatMasker longLabel Repeating Elements by RepeatMasker group varRep visibility dense type bigBed 6 + colorByStrand 50,50,150 150,50,50 maxWindowToDraw 10000000 spectrum on html html/GCF_000331145.1_ASM33114v1.repeatMasker track repeatMaskerLINE parent repeatMasker shortLabel LINE longLabel LINE Repeating Elements by RepeatMasker type bigBed 6 + priority 2 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.rmsk.LINE.bb track repeatMaskerLTR parent repeatMasker shortLabel LTR longLabel LTR Repeating Elements by RepeatMasker type bigBed 6 + priority 3 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.rmsk.LTR.bb track repeatMaskerDNA parent repeatMasker shortLabel DNA longLabel DNA Repeating Elements by RepeatMasker type bigBed 6 + priority 4 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.rmsk.DNA.bb track repeatMaskerSimple parent repeatMasker shortLabel Simple longLabel Simple Repeating Elements by RepeatMasker type bigBed 6 + priority 5 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.rmsk.Simple.bb track repeatMaskerLowComplexity parent repeatMasker shortLabel Low Complexity longLabel Low Complexity Repeating Elements by RepeatMasker type bigBed 6 + priority 6 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.rmsk.Low_complexity.bb track repeatMaskerSatellite parent repeatMasker shortLabel Satellite longLabel Satellite Repeating Elements by RepeatMasker type bigBed 6 + priority 7 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.rmsk.Satellite.bb track repeatMaskerRNA parent repeatMasker shortLabel RNA longLabel RNA Repeating Elements by RepeatMasker type bigBed 6 + priority 8 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.rmsk.RNA.bb track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000331145.1_ASM33114v1.simpleRepeat.bb html html/GCF_000331145.1_ASM33114v1.simpleRepeat track refSeqComposite compositeTrack on shortLabel NCBI RefSeq longLabel RefSeq gene predictions from NCBI group genes visibility pack type bigBed dragAndDrop subTracks allButtonPair on dataVersion NCBI Cicer arietinum Annotation Release 102 (2019-06-24) html html/GCF_000331145.1_ASM33114v1.refSeqComposite priority 2 track ncbiRefSeq parent refSeqComposite on color 12,12,120 altColor 120,12,12 shortLabel RefSeq All type 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off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.windowMasker.bb html html/GCF_000331145.1_ASM33114v1.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCF_000331145.1_ASM33114v1.allGaps.bb html html/GCF_000331145.1_ASM33114v1.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_000331145.1_ASM33114v1.augustus.bb html html/GCF_000331145.1_ASM33114v1.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_000331145.1_ASM33114v1.xenoRefGene.bb url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCF_000331145.1_ASM33114v1.xenoRefGene.ix html html/GCF_000331145.1_ASM33114v1.xenoRefGene