# Assembly name: Whole genome assembly # Organism name: Amycolatopsis decaplanina DSM 44594 (high G+C Gram-positive bacteria) # Infraspecific name: strain=DSM 44594 # Taxid: 1284240 # BioSample: SAMN02470008 # BioProject: PRJNA186747 # Submitter: Institute of Microbial Technology (IMTECH), Chandigarh, India 160036 # Date: 2013-02-26 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: AOHO01 # Assembly method: SOAPdenovo v. 1.05 # Genome coverage: 794.0x # Sequencing technology: Illumina HiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000342005.1 # RefSeq assembly accession: GCF_000342005.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000342015.1 GCF_000342015.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Contig001 unplaced-scaffold na na AOHO01000001.1 = NZ_AOHO01000001.1 Primary Assembly 397 na Contig002 unplaced-scaffold na na AOHO01000002.1 = NZ_AOHO01000002.1 Primary Assembly 925 na Contig003 unplaced-scaffold na na AOHO01000003.1 = NZ_AOHO01000003.1 Primary Assembly 445 na Contig004 unplaced-scaffold na na AOHO01000004.1 = NZ_AOHO01000004.1 Primary Assembly 2665 na Contig005 unplaced-scaffold na na AOHO01000005.1 = NZ_AOHO01000005.1 Primary Assembly 1141 na Contig006 unplaced-scaffold na na AOHO01000006.1 = NZ_AOHO01000006.1 Primary Assembly 1786 na Contig007 unplaced-scaffold na na AOHO01000007.1 = NZ_AOHO01000007.1 Primary Assembly 1309 na Contig008 unplaced-scaffold na na AOHO01000008.1 = NZ_AOHO01000008.1 Primary Assembly 3134 na Contig009 unplaced-scaffold na na AOHO01000009.1 = NZ_AOHO01000009.1 Primary Assembly 350 na Contig0010 unplaced-scaffold na na AOHO01000010.1 = NZ_AOHO01000010.1 Primary Assembly 493 na Contig0011 unplaced-scaffold na na AOHO01000011.1 = NZ_AOHO01000011.1 Primary Assembly 432 na Contig0012 unplaced-scaffold na na AOHO01000012.1 = NZ_AOHO01000012.1 Primary Assembly 78119 na Contig0013 unplaced-scaffold na na AOHO01000013.1 = NZ_AOHO01000013.1 Primary Assembly 410 na Contig0014 unplaced-scaffold na na AOHO01000014.1 = NZ_AOHO01000014.1 Primary Assembly 169090 na Contig0015 unplaced-scaffold na na AOHO01000015.1 = NZ_AOHO01000015.1 Primary Assembly 798 na Contig0016 unplaced-scaffold na na AOHO01000016.1 = NZ_AOHO01000016.1 Primary Assembly 327 na Contig0017 unplaced-scaffold na na AOHO01000017.1 = NZ_AOHO01000017.1 Primary Assembly 331 na Contig0018 unplaced-scaffold na na AOHO01000018.1 = NZ_AOHO01000018.1 Primary Assembly 1240 na Contig0019 unplaced-scaffold na na AOHO01000019.1 = NZ_AOHO01000019.1 Primary Assembly 274135 na Contig0020 unplaced-scaffold na na AOHO01000020.1 = NZ_AOHO01000020.1 Primary Assembly 178041 na Contig0021 unplaced-scaffold na na AOHO01000021.1 = NZ_AOHO01000021.1 Primary Assembly 632 na Contig0022 unplaced-scaffold na na AOHO01000022.1 = NZ_AOHO01000022.1 Primary Assembly 584 na Contig0023 unplaced-scaffold na na AOHO01000023.1 = NZ_AOHO01000023.1 Primary Assembly 2162 na Contig0024 unplaced-scaffold na na AOHO01000024.1 = NZ_AOHO01000024.1 Primary Assembly 1458 na Contig0025 unplaced-scaffold na na AOHO01000025.1 = NZ_AOHO01000025.1 Primary Assembly 1263 na Contig0026 unplaced-scaffold na na AOHO01000026.1 = NZ_AOHO01000026.1 Primary Assembly 419769 na Contig0027 unplaced-scaffold na na AOHO01000027.1 = NZ_AOHO01000027.1 Primary Assembly 2125 na Contig0028 unplaced-scaffold na na AOHO01000028.1 = NZ_AOHO01000028.1 Primary Assembly 301011 na Contig0029 unplaced-scaffold na na AOHO01000029.1 = NZ_AOHO01000029.1 Primary Assembly 2321 na Contig0030 unplaced-scaffold na na AOHO01000030.1 = NZ_AOHO01000030.1 Primary Assembly 352 na Contig0031 unplaced-scaffold na na AOHO01000031.1 = NZ_AOHO01000031.1 Primary Assembly 330 na Contig0032 unplaced-scaffold na na AOHO01000032.1 = NZ_AOHO01000032.1 Primary Assembly 142671 na Contig0033 unplaced-scaffold na na AOHO01000033.1 = NZ_AOHO01000033.1 Primary Assembly 1582 na Contig0034 unplaced-scaffold na na AOHO01000034.1 = NZ_AOHO01000034.1 Primary Assembly 478 na Contig0035 unplaced-scaffold na na AOHO01000035.1 = NZ_AOHO01000035.1 Primary Assembly 612 na Contig0036 unplaced-scaffold na na AOHO01000036.1 = NZ_AOHO01000036.1 Primary Assembly 22061 na Contig0037 unplaced-scaffold na na AOHO01000037.1 = NZ_AOHO01000037.1 Primary Assembly 70738 na Contig0038 unplaced-scaffold na na AOHO01000038.1 = NZ_AOHO01000038.1 Primary Assembly 203925 na Contig0039 unplaced-scaffold na na AOHO01000039.1 = NZ_AOHO01000039.1 Primary Assembly 2069 na Contig0040 unplaced-scaffold na na AOHO01000040.1 = NZ_AOHO01000040.1 Primary Assembly 2017 na Contig0041 unplaced-scaffold na na AOHO01000041.1 = NZ_AOHO01000041.1 Primary Assembly 1790 na Contig0042 unplaced-scaffold na na AOHO01000042.1 = NZ_AOHO01000042.1 Primary Assembly 1169 na Contig0043 unplaced-scaffold na na AOHO01000043.1 = NZ_AOHO01000043.1 Primary Assembly 302830 na Contig0044 unplaced-scaffold na na AOHO01000044.1 = NZ_AOHO01000044.1 Primary Assembly 2165 na Contig0045 unplaced-scaffold na na AOHO01000045.1 = NZ_AOHO01000045.1 Primary Assembly 360769 na Contig0046 unplaced-scaffold na na AOHO01000046.1 = NZ_AOHO01000046.1 Primary Assembly 495 na Contig0047 unplaced-scaffold na na AOHO01000047.1 = NZ_AOHO01000047.1 Primary Assembly 243154 na Contig0048 unplaced-scaffold na na AOHO01000048.1 = NZ_AOHO01000048.1 Primary Assembly 791100 na Contig0049 unplaced-scaffold na na AOHO01000049.1 = NZ_AOHO01000049.1 Primary Assembly 52599 na Contig0050 unplaced-scaffold na na AOHO01000050.1 = NZ_AOHO01000050.1 Primary Assembly 1324 na Contig0051 unplaced-scaffold na na AOHO01000051.1 = NZ_AOHO01000051.1 Primary Assembly 1076 na Contig0052 unplaced-scaffold na na AOHO01000052.1 = NZ_AOHO01000052.1 Primary Assembly 34760 na Contig0053 unplaced-scaffold na na AOHO01000053.1 = NZ_AOHO01000053.1 Primary Assembly 716 na Contig0054 unplaced-scaffold na na AOHO01000054.1 = NZ_AOHO01000054.1 Primary Assembly 67247 na Contig0055 unplaced-scaffold na na AOHO01000055.1 = NZ_AOHO01000055.1 Primary Assembly 449405 na Contig0056 unplaced-scaffold na na AOHO01000056.1 = NZ_AOHO01000056.1 Primary Assembly 333 na Contig0057 unplaced-scaffold na na AOHO01000057.1 = NZ_AOHO01000057.1 Primary Assembly 300 na Contig0058 unplaced-scaffold na na AOHO01000058.1 = NZ_AOHO01000058.1 Primary Assembly 374480 na Contig0059 unplaced-scaffold na na AOHO01000059.1 = NZ_AOHO01000059.1 Primary Assembly 344 na Contig0060 unplaced-scaffold na na AOHO01000060.1 = NZ_AOHO01000060.1 Primary Assembly 337 na Contig0061 unplaced-scaffold na na AOHO01000061.1 = NZ_AOHO01000061.1 Primary Assembly 81777 na Contig0062 unplaced-scaffold na na AOHO01000062.1 = NZ_AOHO01000062.1 Primary Assembly 42700 na Contig0063 unplaced-scaffold na na AOHO01000063.1 = NZ_AOHO01000063.1 Primary Assembly 389908 na Contig0064 unplaced-scaffold na na AOHO01000064.1 = NZ_AOHO01000064.1 Primary Assembly 68272 na Contig0065 unplaced-scaffold na na AOHO01000065.1 = NZ_AOHO01000065.1 Primary Assembly 118538 na Contig0066 unplaced-scaffold na na AOHO01000066.1 = NZ_AOHO01000066.1 Primary Assembly 14536 na Contig0067 unplaced-scaffold na na AOHO01000067.1 = NZ_AOHO01000067.1 Primary Assembly 186149 na Contig0068 unplaced-scaffold na na AOHO01000068.1 = NZ_AOHO01000068.1 Primary Assembly 419460 na Contig0069 unplaced-scaffold na na AOHO01000069.1 = NZ_AOHO01000069.1 Primary Assembly 222422 na Contig0070 unplaced-scaffold na na AOHO01000070.1 = NZ_AOHO01000070.1 Primary Assembly 16999 na Contig0071 unplaced-scaffold na na AOHO01000071.1 = NZ_AOHO01000071.1 Primary Assembly 317689 na Contig0072 unplaced-scaffold na na AOHO01000072.1 = NZ_AOHO01000072.1 Primary Assembly 78261 na Contig0073 unplaced-scaffold na na AOHO01000073.1 = NZ_AOHO01000073.1 Primary Assembly 28656 na Contig0074 unplaced-scaffold na na AOHO01000074.1 = NZ_AOHO01000074.1 Primary Assembly 561260 na Contig0075 unplaced-scaffold na na AOHO01000075.1 = NZ_AOHO01000075.1 Primary Assembly 253221 na Contig0076 unplaced-scaffold na na AOHO01000076.1 = NZ_AOHO01000076.1 Primary Assembly 72449 na Contig0077 unplaced-scaffold na na AOHO01000077.1 = NZ_AOHO01000077.1 Primary Assembly 284507 na Contig0078 unplaced-scaffold na na AOHO01000078.1 = NZ_AOHO01000078.1 Primary Assembly 253039 na Contig0079 unplaced-scaffold na na AOHO01000079.1 = NZ_AOHO01000079.1 Primary Assembly 123412 na Contig0080 unplaced-scaffold na na AOHO01000080.1 = NZ_AOHO01000080.1 Primary Assembly 58766 na Contig0081 unplaced-scaffold na na AOHO01000081.1 = NZ_AOHO01000081.1 Primary Assembly 47073 na Contig0082 unplaced-scaffold na na AOHO01000082.1 = NZ_AOHO01000082.1 Primary Assembly 53042 na Contig0083 unplaced-scaffold na na AOHO01000083.1 = NZ_AOHO01000083.1 Primary Assembly 32349 na Contig0084 unplaced-scaffold na na AOHO01000084.1 = NZ_AOHO01000084.1 Primary Assembly 92232 na Contig0085 unplaced-scaffold na na AOHO01000085.1 = NZ_AOHO01000085.1 Primary Assembly 136438 na