hub GCF_000524195.1 genome assembly shortLabel flatworm E.granulosus longLabel flatworm E.granulosus/Echinococcus granulosus/GCF_000524195.1_ASM52419v1 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_000524195.1_ASM52419v1.description.html genome GCF_000524195.1 taxId 6210 groups groups.txt description flatworm E.granulosus twoBitPath GCF_000524195.1.2bit twoBitBptUrl GCF_000524195.1.2bit.bpt chromSizes GCF_000524195.1.chrom.sizes.txt chromAliasBb GCF_000524195.1.chromAlias.bb organism ASM52419v1 Jan. 2014 defaultPos NW_020170381.1:1297734-1307734 scientificName Echinococcus granulosus htmlPath html/GCF_000524195.1_ASM52419v1.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/524/195/GCF_000524195.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/524/195/GCF_000524195.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/524/195/GCF_000524195.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000524195.1_ASM52419v1.assembly.bb type bigBed 6 html html/GCF_000524195.1_ASM52419v1.assembly searchIndex name searchTrix ixIxx/GCF_000524195.1_ASM52419v1.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000524195.1_ASM52419v1.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_000524195.1_ASM52419v1.gc5Base.bw html html/GCF_000524195.1_ASM52419v1.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_000524195.1_ASM52419v1.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCF_000524195.1_ASM52419v1.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_000524195.1_ASM52419v1.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCF_000524195.1_ASM52419v1.rmsk.bb maxWindowToDraw 5000000 html html/GCF_000524195.1_ASM52419v1.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000524195.1_ASM52419v1.simpleRepeat.bb html html/GCF_000524195.1_ASM52419v1.simpleRepeat track refSeqComposite compositeTrack on shortLabel NCBI RefSeq longLabel RefSeq gene predictions from NCBI group genes visibility pack type bigBed dragAndDrop subTracks allButtonPair on dataVersion INSDC submitter (2020-03-09) html html/GCF_000524195.1_ASM52419v1.refSeqComposite priority 2 track ncbiRefSeq parent refSeqComposite on color 12,12,120 altColor 120,12,12 shortLabel RefSeq All type bigGenePred labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_000524195.1_ASM52419v1.ncbiRefSeq.ix bigDataUrl bbi/GCF_000524195.1_ASM52419v1.ncbiRefSeq.bb longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*) idXref ncbiRefSeqLink mrnaAcc name baseColorUseCds given baseColorDefault genomicCodons priority 1 track ncbiRefSeqPredicted color 12,12,120 parent refSeqComposite on shortLabel RefSeq Predicted longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*) type bigGenePred labelFields name,geneName,geneName2 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color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_000524195.1_ASM52419v1.augustus.bb html html/GCF_000524195.1_ASM52419v1.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_000524195.1_ASM52419v1.xenoRefGene.bb url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCF_000524195.1_ASM52419v1.xenoRefGene.ix html html/GCF_000524195.1_ASM52419v1.xenoRefGene track ensGene shortLabel Ensembl genes longLabel Ensembl genes 2022_07 group genes priority 40 visibility pack color 150,0,0 itemRgb on type bigGenePred bigDataUrl bbi/GCF_000524195.1_ASM52419v1.ensGene.bb searchTrix ixIxx/GCF_000524195.1_ASM52419v1.ensGene.ix searchIndex name labelFields name,name2 defaultLabelFields name2 baseColorUseCds given baseColorDefault genomicCodons labelSeperator " " 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