# Assembly name: ASM61412v1 # Organism name: Bacteroides rodentium JCM 16496 (CFB group bacteria) # Infraspecific name: strain=JCM 16496 # Taxid: 1236512 # BioSample: SAMD00002732 # BioProject: PRJDB600 # Submitter: The University of Tokyo # Date: 2014-03-31 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: BAKJ01 # Assembly method: Newbler v. 2.8 # Genome coverage: 27x # Sequencing technology: Ion PGM # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000614125.1 # RefSeq assembly accession: GCF_000614125.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000614135.1 GCF_000614135.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name BAKJ01000001.1 unplaced-scaffold na na BAKJ01000001.1 = NZ_BAKJ01000001.1 Primary Assembly 216488 na BAKJ01000002.1 unplaced-scaffold na na BAKJ01000002.1 = NZ_BAKJ01000002.1 Primary Assembly 204574 na BAKJ01000003.1 unplaced-scaffold na na BAKJ01000003.1 = NZ_BAKJ01000003.1 Primary Assembly 191573 na BAKJ01000004.1 unplaced-scaffold na na BAKJ01000004.1 = NZ_BAKJ01000004.1 Primary Assembly 188635 na BAKJ01000005.1 unplaced-scaffold na na BAKJ01000005.1 = NZ_BAKJ01000005.1 Primary Assembly 167675 na BAKJ01000006.1 unplaced-scaffold na na BAKJ01000006.1 = NZ_BAKJ01000006.1 Primary Assembly 167462 na BAKJ01000007.1 unplaced-scaffold na na BAKJ01000007.1 = NZ_BAKJ01000007.1 Primary Assembly 154130 na BAKJ01000008.1 unplaced-scaffold na na BAKJ01000008.1 = NZ_BAKJ01000008.1 Primary Assembly 132067 na BAKJ01000009.1 unplaced-scaffold na na BAKJ01000009.1 = NZ_BAKJ01000009.1 Primary Assembly 119210 na BAKJ01000010.1 unplaced-scaffold na na BAKJ01000010.1 = NZ_BAKJ01000010.1 Primary Assembly 116088 na BAKJ01000011.1 unplaced-scaffold na na BAKJ01000011.1 = NZ_BAKJ01000011.1 Primary Assembly 115900 na BAKJ01000012.1 unplaced-scaffold na na BAKJ01000012.1 = NZ_BAKJ01000012.1 Primary Assembly 101021 na BAKJ01000013.1 unplaced-scaffold na na BAKJ01000013.1 = NZ_BAKJ01000013.1 Primary Assembly 98900 na BAKJ01000014.1 unplaced-scaffold na na BAKJ01000014.1 = NZ_BAKJ01000014.1 Primary Assembly 94108 na BAKJ01000015.1 unplaced-scaffold na na BAKJ01000015.1 = NZ_BAKJ01000015.1 Primary Assembly 91833 na BAKJ01000016.1 unplaced-scaffold na na BAKJ01000016.1 = NZ_BAKJ01000016.1 Primary Assembly 86118 na BAKJ01000017.1 unplaced-scaffold na na BAKJ01000017.1 = NZ_BAKJ01000017.1 Primary Assembly 81611 na BAKJ01000018.1 unplaced-scaffold na na BAKJ01000018.1 = NZ_BAKJ01000018.1 Primary Assembly 80099 na BAKJ01000019.1 unplaced-scaffold na na BAKJ01000019.1 = NZ_BAKJ01000019.1 Primary Assembly 78229 na BAKJ01000020.1 unplaced-scaffold na na BAKJ01000020.1 = NZ_BAKJ01000020.1 Primary Assembly 78026 na BAKJ01000021.1 unplaced-scaffold na na BAKJ01000021.1 = NZ_BAKJ01000021.1 Primary Assembly 77550 na BAKJ01000022.1 unplaced-scaffold na na BAKJ01000022.1 = NZ_BAKJ01000022.1 Primary Assembly 74575 na BAKJ01000023.1 unplaced-scaffold na na BAKJ01000023.1 = NZ_BAKJ01000023.1 Primary Assembly 72342 na BAKJ01000024.1 unplaced-scaffold na na BAKJ01000024.1 = NZ_BAKJ01000024.1 Primary Assembly 69536 na BAKJ01000025.1 unplaced-scaffold na na BAKJ01000025.1 = NZ_BAKJ01000025.1 Primary Assembly 68694 na BAKJ01000026.1 unplaced-scaffold na na BAKJ01000026.1 = NZ_BAKJ01000026.1 Primary Assembly 67467 na BAKJ01000027.1 unplaced-scaffold na na BAKJ01000027.1 = NZ_BAKJ01000027.1 Primary Assembly 65071 na BAKJ01000028.1 unplaced-scaffold na na BAKJ01000028.1 = NZ_BAKJ01000028.1 Primary Assembly 64855 na BAKJ01000029.1 unplaced-scaffold na na BAKJ01000029.1 = NZ_BAKJ01000029.1 Primary Assembly 59536 na BAKJ01000030.1 unplaced-scaffold na na BAKJ01000030.1 = NZ_BAKJ01000030.1 Primary Assembly 59182 na BAKJ01000031.1 unplaced-scaffold na na BAKJ01000031.1 = NZ_BAKJ01000031.1 Primary Assembly 58483 na BAKJ01000032.1 unplaced-scaffold na na BAKJ01000032.1 = NZ_BAKJ01000032.1 Primary Assembly 58191 na BAKJ01000033.1 unplaced-scaffold na na BAKJ01000033.1 = NZ_BAKJ01000033.1 Primary Assembly 57266 na BAKJ01000034.1 unplaced-scaffold na na BAKJ01000034.1 = NZ_BAKJ01000034.1 Primary Assembly 57178 na BAKJ01000035.1 unplaced-scaffold na na BAKJ01000035.1 = NZ_BAKJ01000035.1 Primary Assembly 51970 na BAKJ01000036.1 unplaced-scaffold na na BAKJ01000036.1 = NZ_BAKJ01000036.1 Primary Assembly 47373 na BAKJ01000037.1 unplaced-scaffold na na BAKJ01000037.1 = NZ_BAKJ01000037.1 Primary Assembly 46401 na BAKJ01000038.1 unplaced-scaffold na na BAKJ01000038.1 = NZ_BAKJ01000038.1 Primary Assembly 46018 na BAKJ01000039.1 unplaced-scaffold na na BAKJ01000039.1 = NZ_BAKJ01000039.1 Primary Assembly 45852 na BAKJ01000040.1 unplaced-scaffold na na BAKJ01000040.1 = NZ_BAKJ01000040.1 Primary Assembly 45622 na BAKJ01000041.1 unplaced-scaffold na na BAKJ01000041.1 = NZ_BAKJ01000041.1 Primary Assembly 45274 na BAKJ01000042.1 unplaced-scaffold na na BAKJ01000042.1 = NZ_BAKJ01000042.1 Primary Assembly 43436 na BAKJ01000043.1 unplaced-scaffold na na BAKJ01000043.1 = NZ_BAKJ01000043.1 Primary Assembly 39158 na BAKJ01000044.1 unplaced-scaffold na na BAKJ01000044.1 = NZ_BAKJ01000044.1 Primary Assembly 38639 na BAKJ01000045.1 unplaced-scaffold na na BAKJ01000045.1 = NZ_BAKJ01000045.1 Primary Assembly 34221 na BAKJ01000046.1 unplaced-scaffold na na BAKJ01000046.1 = NZ_BAKJ01000046.1 Primary Assembly 33108 na BAKJ01000047.1 unplaced-scaffold na na BAKJ01000047.1 = NZ_BAKJ01000047.1 Primary Assembly 32989 na BAKJ01000048.1 unplaced-scaffold na na BAKJ01000048.1 = NZ_BAKJ01000048.1 Primary Assembly 32820 na BAKJ01000049.1 unplaced-scaffold na na BAKJ01000049.1 = NZ_BAKJ01000049.1 Primary Assembly 31834 na BAKJ01000050.1 unplaced-scaffold na na BAKJ01000050.1 = NZ_BAKJ01000050.1 Primary Assembly 31294 na BAKJ01000051.1 unplaced-scaffold na na BAKJ01000051.1 = NZ_BAKJ01000051.1 Primary Assembly 30601 na BAKJ01000052.1 unplaced-scaffold na na BAKJ01000052.1 = NZ_BAKJ01000052.1 Primary Assembly 30398 na BAKJ01000053.1 unplaced-scaffold na na BAKJ01000053.1 = NZ_BAKJ01000053.1 Primary Assembly 29743 na BAKJ01000054.1 unplaced-scaffold na na BAKJ01000054.1 = NZ_BAKJ01000054.1 Primary Assembly 29248 na BAKJ01000055.1 unplaced-scaffold na na BAKJ01000055.1 = NZ_BAKJ01000055.1 Primary Assembly 27716 na BAKJ01000056.1 unplaced-scaffold na na BAKJ01000056.1 = NZ_BAKJ01000056.1 Primary Assembly 26722 na BAKJ01000057.1 unplaced-scaffold na na BAKJ01000057.1 = NZ_BAKJ01000057.1 Primary Assembly 24415 na BAKJ01000058.1 unplaced-scaffold na na BAKJ01000058.1 = NZ_BAKJ01000058.1 Primary Assembly 23917 na BAKJ01000059.1 unplaced-scaffold na na BAKJ01000059.1 = NZ_BAKJ01000059.1 Primary Assembly 20295 na BAKJ01000060.1 unplaced-scaffold na na BAKJ01000060.1 = NZ_BAKJ01000060.1 Primary Assembly 19951 na BAKJ01000061.1 unplaced-scaffold na na BAKJ01000061.1 = NZ_BAKJ01000061.1 Primary Assembly 19279 na BAKJ01000062.1 unplaced-scaffold na na BAKJ01000062.1 = NZ_BAKJ01000062.1 Primary Assembly 17684 na BAKJ01000063.1 unplaced-scaffold na na BAKJ01000063.1 = NZ_BAKJ01000063.1 Primary Assembly 16804 na BAKJ01000064.1 unplaced-scaffold na na BAKJ01000064.1 = NZ_BAKJ01000064.1 Primary Assembly 15402 na BAKJ01000065.1 unplaced-scaffold na na BAKJ01000065.1 = NZ_BAKJ01000065.1 Primary Assembly 14677 na BAKJ01000066.1 unplaced-scaffold na na BAKJ01000066.1 = NZ_BAKJ01000066.1 Primary Assembly 14490 na BAKJ01000067.1 unplaced-scaffold na na BAKJ01000067.1 = NZ_BAKJ01000067.1 Primary Assembly 13701 na BAKJ01000068.1 unplaced-scaffold na na BAKJ01000068.1 = NZ_BAKJ01000068.1 Primary Assembly 13590 na BAKJ01000069.1 unplaced-scaffold na na BAKJ01000069.1 = NZ_BAKJ01000069.1 Primary Assembly 12944 na BAKJ01000070.1 unplaced-scaffold na na BAKJ01000070.1 = NZ_BAKJ01000070.1 Primary Assembly 12661 na BAKJ01000071.1 unplaced-scaffold na na BAKJ01000071.1 = NZ_BAKJ01000071.1 Primary Assembly 12212 na BAKJ01000072.1 unplaced-scaffold na na BAKJ01000072.1 = NZ_BAKJ01000072.1 Primary Assembly 11564 na BAKJ01000073.1 unplaced-scaffold na na BAKJ01000073.1 = NZ_BAKJ01000073.1 Primary Assembly 11069 na BAKJ01000074.1 unplaced-scaffold na na BAKJ01000074.1 = NZ_BAKJ01000074.1 Primary Assembly 10435 na BAKJ01000075.1 unplaced-scaffold na na BAKJ01000075.1 = NZ_BAKJ01000075.1 Primary Assembly 10029 na BAKJ01000076.1 unplaced-scaffold na na BAKJ01000076.1 = NZ_BAKJ01000076.1 Primary Assembly 9454 na BAKJ01000077.1 unplaced-scaffold na na BAKJ01000077.1 = NZ_BAKJ01000077.1 Primary Assembly 8824 na BAKJ01000078.1 unplaced-scaffold na na BAKJ01000078.1 = NZ_BAKJ01000078.1 Primary Assembly 8486 na BAKJ01000079.1 unplaced-scaffold na na BAKJ01000079.1 = NZ_BAKJ01000079.1 Primary Assembly 8398 na BAKJ01000080.1 unplaced-scaffold na na BAKJ01000080.1 = NZ_BAKJ01000080.1 Primary Assembly 8165 na BAKJ01000081.1 unplaced-scaffold na na BAKJ01000081.1 = NZ_BAKJ01000081.1 Primary Assembly 7644 na BAKJ01000082.1 unplaced-scaffold na na BAKJ01000082.1 = NZ_BAKJ01000082.1 Primary Assembly 7413 na BAKJ01000083.1 unplaced-scaffold na na BAKJ01000083.1 = NZ_BAKJ01000083.1 Primary Assembly 7303 na BAKJ01000084.1 unplaced-scaffold na na BAKJ01000084.1 = NZ_BAKJ01000084.1 Primary Assembly 7061 na BAKJ01000085.1 unplaced-scaffold na na BAKJ01000085.1 = NZ_BAKJ01000085.1 Primary Assembly 7022 na BAKJ01000086.1 unplaced-scaffold na na BAKJ01000086.1 = NZ_BAKJ01000086.1 Primary Assembly 6819 na BAKJ01000087.1 unplaced-scaffold na na BAKJ01000087.1 = NZ_BAKJ01000087.1 Primary Assembly 6802 na BAKJ01000088.1 unplaced-scaffold na na BAKJ01000088.1 = NZ_BAKJ01000088.1 Primary Assembly 6650 na BAKJ01000089.1 unplaced-scaffold na na BAKJ01000089.1 = NZ_BAKJ01000089.1 Primary Assembly 6611 na BAKJ01000090.1 unplaced-scaffold na na BAKJ01000090.1 = NZ_BAKJ01000090.1 Primary Assembly 6572 na BAKJ01000091.1 unplaced-scaffold na na BAKJ01000091.1 = NZ_BAKJ01000091.1 Primary Assembly 6538 na BAKJ01000092.1 unplaced-scaffold na na BAKJ01000092.1 = NZ_BAKJ01000092.1 Primary Assembly 6533 na BAKJ01000093.1 unplaced-scaffold na na BAKJ01000093.1 = NZ_BAKJ01000093.1 Primary Assembly 6469 na BAKJ01000094.1 unplaced-scaffold na na BAKJ01000094.1 = NZ_BAKJ01000094.1 Primary Assembly 6345 na BAKJ01000095.1 unplaced-scaffold na na BAKJ01000095.1 = NZ_BAKJ01000095.1 Primary Assembly 6326 na BAKJ01000096.1 unplaced-scaffold na na BAKJ01000096.1 = NZ_BAKJ01000096.1 Primary Assembly 6005 na BAKJ01000097.1 unplaced-scaffold na na BAKJ01000097.1 = NZ_BAKJ01000097.1 Primary Assembly 5977 na BAKJ01000098.1 unplaced-scaffold na na BAKJ01000098.1 = NZ_BAKJ01000098.1 Primary Assembly 5965 na BAKJ01000099.1 unplaced-scaffold na na BAKJ01000099.1 = NZ_BAKJ01000099.1 Primary Assembly 5915 na BAKJ01000100.1 unplaced-scaffold na na BAKJ01000100.1 = NZ_BAKJ01000100.1 Primary Assembly 5871 na BAKJ01000101.1 unplaced-scaffold na na BAKJ01000101.1 = NZ_BAKJ01000101.1 Primary Assembly 5786 na BAKJ01000102.1 unplaced-scaffold na na BAKJ01000102.1 = NZ_BAKJ01000102.1 Primary Assembly 5689 na BAKJ01000103.1 unplaced-scaffold na na BAKJ01000103.1 = NZ_BAKJ01000103.1 Primary Assembly 5573 na BAKJ01000104.1 unplaced-scaffold na na BAKJ01000104.1 = NZ_BAKJ01000104.1 Primary Assembly 5524 na BAKJ01000105.1 unplaced-scaffold na na BAKJ01000105.1 = NZ_BAKJ01000105.1 Primary Assembly 5265 na BAKJ01000106.1 unplaced-scaffold na na BAKJ01000106.1 = NZ_BAKJ01000106.1 Primary Assembly 4855 na BAKJ01000107.1 unplaced-scaffold na na BAKJ01000107.1 = NZ_BAKJ01000107.1 Primary Assembly 4814 na BAKJ01000108.1 unplaced-scaffold na na BAKJ01000108.1 = NZ_BAKJ01000108.1 Primary Assembly 4098 na BAKJ01000109.1 unplaced-scaffold na na BAKJ01000109.1 = NZ_BAKJ01000109.1 Primary Assembly 3971 na BAKJ01000110.1 unplaced-scaffold na na BAKJ01000110.1 = NZ_BAKJ01000110.1 Primary Assembly 3754 na BAKJ01000111.1 unplaced-scaffold na na BAKJ01000111.1 = NZ_BAKJ01000111.1 Primary Assembly 3457 na BAKJ01000112.1 unplaced-scaffold na na BAKJ01000112.1 = NZ_BAKJ01000112.1 Primary Assembly 3377 na BAKJ01000113.1 unplaced-scaffold na na BAKJ01000113.1 = NZ_BAKJ01000113.1 Primary Assembly 3349 na BAKJ01000114.1 unplaced-scaffold na na BAKJ01000114.1 = NZ_BAKJ01000114.1 Primary Assembly 3327 na BAKJ01000115.1 unplaced-scaffold na na BAKJ01000115.1 = NZ_BAKJ01000115.1 Primary Assembly 3308 na BAKJ01000116.1 unplaced-scaffold na na BAKJ01000116.1 = NZ_BAKJ01000116.1 Primary Assembly 3263 na BAKJ01000117.1 unplaced-scaffold na na BAKJ01000117.1 = NZ_BAKJ01000117.1 Primary Assembly 3114 na BAKJ01000118.1 unplaced-scaffold na na BAKJ01000118.1 = NZ_BAKJ01000118.1 Primary Assembly 2855 na BAKJ01000119.1 unplaced-scaffold na na BAKJ01000119.1 = NZ_BAKJ01000119.1 Primary Assembly 2696 na BAKJ01000120.1 unplaced-scaffold na na BAKJ01000120.1 = NZ_BAKJ01000120.1 Primary Assembly 2507 na BAKJ01000121.1 unplaced-scaffold na na BAKJ01000121.1 = NZ_BAKJ01000121.1 Primary Assembly 2487 na BAKJ01000122.1 unplaced-scaffold na na BAKJ01000122.1 = NZ_BAKJ01000122.1 Primary Assembly 2419 na BAKJ01000123.1 unplaced-scaffold na na BAKJ01000123.1 = NZ_BAKJ01000123.1 Primary Assembly 2180 na BAKJ01000124.1 unplaced-scaffold na na BAKJ01000124.1 = NZ_BAKJ01000124.1 Primary Assembly 2110 na BAKJ01000125.1 unplaced-scaffold na na BAKJ01000125.1 = NZ_BAKJ01000125.1 Primary Assembly 1939 na BAKJ01000126.1 unplaced-scaffold na na BAKJ01000126.1 = NZ_BAKJ01000126.1 Primary Assembly 1916 na BAKJ01000127.1 unplaced-scaffold na na BAKJ01000127.1 = NZ_BAKJ01000127.1 Primary Assembly 1832 na BAKJ01000128.1 unplaced-scaffold na na BAKJ01000128.1 = NZ_BAKJ01000128.1 Primary Assembly 1711 na BAKJ01000129.1 unplaced-scaffold na na BAKJ01000129.1 = NZ_BAKJ01000129.1 Primary Assembly 1633 na BAKJ01000130.1 unplaced-scaffold na na BAKJ01000130.1 = NZ_BAKJ01000130.1 Primary Assembly 1566 na BAKJ01000131.1 unplaced-scaffold na na BAKJ01000131.1 = NZ_BAKJ01000131.1 Primary Assembly 1430 na BAKJ01000132.1 unplaced-scaffold na na BAKJ01000132.1 = NZ_BAKJ01000132.1 Primary Assembly 1381 na BAKJ01000133.1 unplaced-scaffold na na BAKJ01000133.1 = NZ_BAKJ01000133.1 Primary Assembly 1332 na BAKJ01000134.1 unplaced-scaffold na na BAKJ01000134.1 = NZ_BAKJ01000134.1 Primary Assembly 1328 na BAKJ01000135.1 unplaced-scaffold na na BAKJ01000135.1 = NZ_BAKJ01000135.1 Primary Assembly 1314 na BAKJ01000136.1 unplaced-scaffold na na BAKJ01000136.1 = NZ_BAKJ01000136.1 Primary Assembly 1287 na BAKJ01000137.1 unplaced-scaffold na na BAKJ01000137.1 = NZ_BAKJ01000137.1 Primary Assembly 1239 na BAKJ01000138.1 unplaced-scaffold na na BAKJ01000138.1 = NZ_BAKJ01000138.1 Primary Assembly 1192 na BAKJ01000139.1 unplaced-scaffold na na BAKJ01000139.1 = NZ_BAKJ01000139.1 Primary Assembly 1175 na BAKJ01000140.1 unplaced-scaffold na na BAKJ01000140.1 = NZ_BAKJ01000140.1 Primary Assembly 1140 na BAKJ01000141.1 unplaced-scaffold na na BAKJ01000141.1 = NZ_BAKJ01000141.1 Primary Assembly 1037 na BAKJ01000142.1 unplaced-scaffold na na BAKJ01000142.1 = NZ_BAKJ01000142.1 Primary Assembly 1027 na BAKJ01000143.1 unplaced-scaffold na na BAKJ01000143.1 = NZ_BAKJ01000143.1 Primary Assembly 967 na BAKJ01000144.1 unplaced-scaffold na na BAKJ01000144.1 = NZ_BAKJ01000144.1 Primary Assembly 963 na BAKJ01000145.1 unplaced-scaffold na na BAKJ01000145.1 = NZ_BAKJ01000145.1 Primary Assembly 818 na BAKJ01000146.1 unplaced-scaffold na na BAKJ01000146.1 = NZ_BAKJ01000146.1 Primary Assembly 761 na BAKJ01000147.1 unplaced-scaffold na na BAKJ01000147.1 = NZ_BAKJ01000147.1 Primary Assembly 679 na BAKJ01000148.1 unplaced-scaffold na na BAKJ01000148.1 = NZ_BAKJ01000148.1 Primary Assembly 650 na