# Assembly name: UoM_Shae.V3 # Organism name: Schistosoma haematobium (flatworms) # Sex: pooled male and female # Taxid: 6185 # BioSample: SAMN11431408 # BioProject: PRJNA78265 # Submitter: The University of Melbourne # Date: 2022-02-10 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: AMPZ03 # Assembly method: Canu v. 1.9; Medaka v. 1.0.3; purge_haplotigs v. 1.1.1; Platanus-allee v. 2.0.2; HiRise v. 2.0.5; pilon v. 1.23; 3D-DNA v. 180922; Juicebox Assembly Tools v. 1.22; TGS-GapCloser v. 1.0.3; HyPo v. 1.0.3 # Expected final version: yes # Genome coverage: 130.0x # Sequencing technology: Illumina; Oxford Nanopore; PacBio; Hi-C # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000699445.3 # RefSeq assembly accession: GCF_000699445.3 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000699455.3 GCF_000699455.3 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HiC_scaffold_2 assembled-molecule ZW Chromosome CM039142.1 = NC_067195.1 Primary Assembly 89168492 na HiC_scaffold_1 assembled-molecule 1 Chromosome CM039143.1 = NC_067196.1 Primary Assembly 93306550 na HiC_scaffold_4 assembled-molecule 2 Chromosome CM039144.1 = NC_067197.1 Primary Assembly 47367863 na HiC_scaffold_3 assembled-molecule 3 Chromosome CM039145.1 = NC_067198.1 Primary Assembly 48328128 na HiC_scaffold_5 assembled-molecule 4 Chromosome CM039146.1 = NC_067199.1 Primary Assembly 46771736 na HiC_scaffold_7 assembled-molecule 5 Chromosome CM039147.1 = NC_067200.1 Primary Assembly 22148653 na HiC_scaffold_6 assembled-molecule 6 Chromosome CM039148.1 = NC_067201.1 Primary Assembly 25509538 na HiC_scaffold_8 assembled-molecule 7 Chromosome CM039149.1 = NC_067202.1 Primary Assembly 19481189 na HiC_scaffold_9 unplaced-scaffold na na AMPZ03000009.1 = NW_026137003.1 Primary Assembly 209180 na HiC_scaffold_12 unplaced-scaffold na na AMPZ03000010.1 = NW_026137004.1 Primary Assembly 35984 na HiC_scaffold_13 unplaced-scaffold na na AMPZ03000011.1 = NW_026137005.1 Primary Assembly 19989 na HiC_scaffold_14 unplaced-scaffold na na AMPZ03000012.1 = NW_026137006.1 Primary Assembly 35775 na HiC_scaffold_55 unplaced-scaffold na na AMPZ03000013.1 = NW_026137007.1 Primary Assembly 73787 na HiC_scaffold_56 unplaced-scaffold na na AMPZ03000014.1 = NW_026137008.1 Primary Assembly 128603 na HiC_scaffold_59 unplaced-scaffold na na AMPZ03000015.1 = NW_026137009.1 Primary Assembly 15001 na HiC_scaffold_62 unplaced-scaffold na na AMPZ03000016.1 = NW_026137010.1 Primary Assembly 49958 na HiC_scaffold_66 unplaced-scaffold na na AMPZ03000017.1 = NW_026137011.1 Primary Assembly 49804 na HiC_scaffold_67 unplaced-scaffold na na AMPZ03000018.1 = NW_026137012.1 Primary Assembly 299181 na HiC_scaffold_68 unplaced-scaffold na na AMPZ03000019.1 = NW_026137013.1 Primary Assembly 162098 na HiC_scaffold_69 unplaced-scaffold na na AMPZ03000020.1 = NW_026137014.1 Primary Assembly 141826 na HiC_scaffold_81 unplaced-scaffold na na AMPZ03000021.1 = NW_026137015.1 Primary Assembly 27927 na HiC_scaffold_83 unplaced-scaffold na na AMPZ03000022.1 = NW_026137016.1 Primary Assembly 25648 na HiC_scaffold_84 unplaced-scaffold na na AMPZ03000023.1 = NW_026137017.1 Primary Assembly 52804 na HiC_scaffold_87 unplaced-scaffold na na AMPZ03000024.1 = NW_026137018.1 Primary Assembly 33027 na HiC_scaffold_95 unplaced-scaffold na na AMPZ03000025.1 = NW_026137019.1 Primary Assembly 38348 na HiC_scaffold_107 unplaced-scaffold na na AMPZ03000026.1 = NW_026137020.1 Primary Assembly 17113 na HiC_scaffold_114 unplaced-scaffold na na AMPZ03000027.1 = NW_026137021.1 Primary Assembly 57163 na HiC_scaffold_117 unplaced-scaffold na na AMPZ03000028.1 = NW_026137022.1 Primary Assembly 11664 na HiC_scaffold_124 unplaced-scaffold na na AMPZ03000029.1 = NW_026137023.1 Primary Assembly 102073 na HiC_scaffold_126 unplaced-scaffold na na AMPZ03000030.1 = NW_026137024.1 Primary Assembly 25034 na HiC_scaffold_135 unplaced-scaffold na na AMPZ03000031.1 = NW_026137025.1 Primary Assembly 35153 na HiC_scaffold_137 unplaced-scaffold na na AMPZ03000032.1 = NW_026137026.1 Primary Assembly 25001 na HiC_scaffold_142 unplaced-scaffold na na AMPZ03000033.1 = NW_026137027.1 Primary Assembly 48958 na HiC_scaffold_149 unplaced-scaffold na na AMPZ03000034.1 = NW_026137028.1 Primary Assembly 24959 na HiC_scaffold_153 unplaced-scaffold na na AMPZ03000035.1 = NW_026137029.1 Primary Assembly 19330 na HiC_scaffold_159 unplaced-scaffold na na AMPZ03000036.1 = NW_026137030.1 Primary Assembly 68626 na HiC_scaffold_164 unplaced-scaffold na na AMPZ03000037.1 = NW_026137031.1 Primary Assembly 29965 na HiC_scaffold_167 unplaced-scaffold na na AMPZ03000038.1 = NW_026137032.1 Primary Assembly 28905 na HiC_scaffold_168 unplaced-scaffold na na AMPZ03000039.1 = NW_026137033.1 Primary Assembly 36999 na HiC_scaffold_170 unplaced-scaffold na na AMPZ03000040.1 = NW_026137034.1 Primary Assembly 5025 na HiC_scaffold_176 unplaced-scaffold na na AMPZ03000041.1 = NW_026137035.1 Primary Assembly 13992 na HiC_scaffold_177 unplaced-scaffold na na AMPZ03000042.1 = NW_026137036.1 Primary Assembly 7994 na HiC_scaffold_180 unplaced-scaffold na na AMPZ03000043.1 = NW_026137037.1 Primary Assembly 53374 na HiC_scaffold_182 unplaced-scaffold na na AMPZ03000044.1 = NW_026137038.1 Primary Assembly 71687 na HiC_scaffold_183 unplaced-scaffold na na AMPZ03000045.1 = NW_026137039.1 Primary Assembly 39326 na HiC_scaffold_185 unplaced-scaffold na na AMPZ03000046.1 = NW_026137040.1 Primary Assembly 16985 na HiC_scaffold_192 unplaced-scaffold na na AMPZ03000047.1 = NW_026137041.1 Primary Assembly 18645 na HiC_scaffold_194 unplaced-scaffold na na AMPZ03000048.1 = NW_026137042.1 Primary Assembly 153846 na HiC_scaffold_195 unplaced-scaffold na na AMPZ03000049.1 = NW_026137043.1 Primary Assembly 71995 na HiC_scaffold_198 unplaced-scaffold na na AMPZ03000050.1 = NW_026137044.1 Primary Assembly 38904 na HiC_scaffold_200 unplaced-scaffold na na AMPZ03000051.1 = NW_026137045.1 Primary Assembly 54953 na HiC_scaffold_203 unplaced-scaffold na na AMPZ03000052.1 = NW_026137046.1 Primary Assembly 15000 na HiC_scaffold_206 unplaced-scaffold na na AMPZ03000053.1 = NW_026137047.1 Primary Assembly 68230 na HiC_scaffold_210 unplaced-scaffold na na AMPZ03000054.1 = NW_026137048.1 Primary Assembly 2620 na HiC_scaffold_212 unplaced-scaffold na na AMPZ03000055.1 = NW_026137049.1 Primary Assembly 31008 na HiC_scaffold_214 unplaced-scaffold na na AMPZ03000056.1 = NW_026137050.1 Primary Assembly 43044 na HiC_scaffold_215 unplaced-scaffold na na AMPZ03000057.1 = NW_026137051.1 Primary Assembly 81325 na HiC_scaffold_222 unplaced-scaffold na na AMPZ03000058.1 = NW_026137052.1 Primary Assembly 75297 na HiC_scaffold_224 unplaced-scaffold na na AMPZ03000059.1 = NW_026137053.1 Primary Assembly 54892 na HiC_scaffold_226 unplaced-scaffold na na AMPZ03000060.1 = NW_026137054.1 Primary Assembly 45906 na HiC_scaffold_229 unplaced-scaffold na na AMPZ03000061.1 = NW_026137055.1 Primary Assembly 52604 na HiC_scaffold_233 unplaced-scaffold na na AMPZ03000062.1 = NW_026137056.1 Primary Assembly 184367 na HiC_scaffold_234 unplaced-scaffold na na AMPZ03000063.1 = NW_026137057.1 Primary Assembly 24995 na HiC_scaffold_236 unplaced-scaffold na na AMPZ03000064.1 = NW_026137058.1 Primary Assembly 117536 na HiC_scaffold_239 unplaced-scaffold na na AMPZ03000065.1 = NW_026137059.1 Primary Assembly 68134 na HiC_scaffold_240 unplaced-scaffold na na AMPZ03000066.1 = NW_026137060.1 Primary Assembly 33191 na HiC_scaffold_246 unplaced-scaffold na na AMPZ03000067.1 = NW_026137061.1 Primary Assembly 36975 na HiC_scaffold_248 unplaced-scaffold na na AMPZ03000068.1 = NW_026137062.1 Primary Assembly 11831 na HiC_scaffold_251 unplaced-scaffold na na AMPZ03000069.1 = NW_026137063.1 Primary Assembly 216941 na HiC_scaffold_253 unplaced-scaffold na na AMPZ03000070.1 = NW_026137064.1 Primary Assembly 4000 na HiC_scaffold_257 unplaced-scaffold na na AMPZ03000071.1 = NW_026137065.1 Primary Assembly 15060 na HiC_scaffold_261 unplaced-scaffold na na AMPZ03000072.1 = NW_026137066.1 Primary Assembly 8000 na HiC_scaffold_263 unplaced-scaffold na na AMPZ03000073.1 = NW_026137067.1 Primary Assembly 6306 na HiC_scaffold_267 unplaced-scaffold na na AMPZ03000074.1 = NW_026137068.1 Primary Assembly 35654 na HiC_scaffold_273 unplaced-scaffold na na AMPZ03000075.1 = NW_026137069.1 Primary Assembly 127781 na HiC_scaffold_277 unplaced-scaffold na na AMPZ03000076.1 = NW_026137070.1 Primary Assembly 2000 na HiC_scaffold_279 unplaced-scaffold na na AMPZ03000077.1 = NW_026137071.1 Primary Assembly 37060 na HiC_scaffold_280 unplaced-scaffold na na AMPZ03000078.1 = NW_026137072.1 Primary Assembly 5002 na HiC_scaffold_285 unplaced-scaffold na na AMPZ03000079.1 = NW_026137073.1 Primary Assembly 97978 na HiC_scaffold_291 unplaced-scaffold na na AMPZ03000080.1 = NW_026137074.1 Primary Assembly 38221 na HiC_scaffold_292 unplaced-scaffold na na AMPZ03000081.1 = NW_026137075.1 Primary Assembly 36743 na HiC_scaffold_293 unplaced-scaffold na na AMPZ03000082.1 = NW_026137076.1 Primary Assembly 54246 na HiC_scaffold_304 unplaced-scaffold na na AMPZ03000083.1 = NW_026137077.1 Primary Assembly 84768 na HiC_scaffold_308 unplaced-scaffold na na AMPZ03000084.1 = NW_026137078.1 Primary Assembly 22835 na HiC_scaffold_310 unplaced-scaffold na na AMPZ03000085.1 = NW_026137079.1 Primary Assembly 9000 na HiC_scaffold_313 unplaced-scaffold na na AMPZ03000086.1 = NW_026137080.1 Primary Assembly 22483 na HiC_scaffold_318 unplaced-scaffold na na AMPZ03000087.1 = NW_026137081.1 Primary Assembly 37964 na HiC_scaffold_323 unplaced-scaffold na na AMPZ03000088.1 = NW_026137082.1 Primary Assembly 43362 na HiC_scaffold_327 unplaced-scaffold na na AMPZ03000089.1 = NW_026137083.1 Primary Assembly 62943 na HiC_scaffold_330 unplaced-scaffold na na AMPZ03000090.1 = NW_026137084.1 Primary Assembly 93645 na HiC_scaffold_333 unplaced-scaffold na na AMPZ03000091.1 = NW_026137085.1 Primary Assembly 34623 na HiC_scaffold_335 unplaced-scaffold na na AMPZ03000092.1 = NW_026137086.1 Primary Assembly 44548 na HiC_scaffold_338 unplaced-scaffold na na AMPZ03000093.1 = NW_026137087.1 Primary Assembly 16770 na HiC_scaffold_339 unplaced-scaffold na na AMPZ03000094.1 = NW_026137088.1 Primary Assembly 31327 na HiC_scaffold_345 unplaced-scaffold na na AMPZ03000095.1 = NW_026137089.1 Primary Assembly 53543 na HiC_scaffold_347 unplaced-scaffold na na AMPZ03000096.1 = NW_026137090.1 Primary Assembly 153376 na HiC_scaffold_350 unplaced-scaffold na na AMPZ03000097.1 = NW_026137091.1 Primary Assembly 38817 na HiC_scaffold_359 unplaced-scaffold na na AMPZ03000098.1 = NW_026137092.1 Primary Assembly 212107 na HiC_scaffold_360 unplaced-scaffold na na AMPZ03000099.1 = NW_026137093.1 Primary Assembly 60984 na HiC_scaffold_362 unplaced-scaffold na na AMPZ03000100.1 = NW_026137094.1 Primary Assembly 12000 na HiC_scaffold_363 unplaced-scaffold na na AMPZ03000101.1 = NW_026137095.1 Primary Assembly 40986 na HiC_scaffold_365 unplaced-scaffold na na AMPZ03000102.1 = NW_026137096.1 Primary Assembly 67968 na HiC_scaffold_366 unplaced-scaffold na na AMPZ03000103.1 = NW_026137097.1 Primary Assembly 46882 na HiC_scaffold_367 unplaced-scaffold na na AMPZ03000104.1 = NW_026137098.1 Primary Assembly 62653 na HiC_scaffold_369 unplaced-scaffold na na AMPZ03000105.1 = NW_026137099.1 Primary Assembly 11143 na HiC_scaffold_371 unplaced-scaffold na na AMPZ03000106.1 = NW_026137100.1 Primary Assembly 52779 na HiC_scaffold_373 unplaced-scaffold na na AMPZ03000107.1 = NW_026137101.1 Primary Assembly 11820 na HiC_scaffold_374 unplaced-scaffold na na AMPZ03000108.1 = NW_026137102.1 Primary Assembly 14533 na HiC_scaffold_376 unplaced-scaffold na na AMPZ03000109.1 = NW_026137103.1 Primary Assembly 336336 na HiC_scaffold_386 unplaced-scaffold na na AMPZ03000110.1 = NW_026137104.1 Primary Assembly 97704 na HiC_scaffold_389 unplaced-scaffold na na AMPZ03000111.1 = NW_026137105.1 Primary Assembly 18641 na HiC_scaffold_394 unplaced-scaffold na na AMPZ03000112.1 = NW_026137106.1 Primary Assembly 129912 na HiC_scaffold_405 unplaced-scaffold na na AMPZ03000113.1 = NW_026137107.1 Primary Assembly 57359 na HiC_scaffold_406 unplaced-scaffold na na AMPZ03000114.1 = NW_026137108.1 Primary Assembly 173075 na HiC_scaffold_408 unplaced-scaffold na na AMPZ03000115.1 = NW_026137109.1 Primary Assembly 74431 na HiC_scaffold_410 unplaced-scaffold na na AMPZ03000116.1 = NW_026137110.1 Primary Assembly 34711 na HiC_scaffold_414 unplaced-scaffold na na AMPZ03000117.1 = NW_026137111.1 Primary Assembly 52015 na HiC_scaffold_415 unplaced-scaffold na na AMPZ03000118.1 = NW_026137112.1 Primary Assembly 32610 na HiC_scaffold_420 unplaced-scaffold na na AMPZ03000119.1 = NW_026137113.1 Primary Assembly 128945 na HiC_scaffold_423 unplaced-scaffold na na AMPZ03000120.1 = NW_026137114.1 Primary Assembly 11529 na HiC_scaffold_428 unplaced-scaffold na na AMPZ03000121.1 = NW_026137115.1 Primary Assembly 51430 na HiC_scaffold_429 unplaced-scaffold na na AMPZ03000122.1 = NW_026137116.1 Primary Assembly 5767 na HiC_scaffold_434 unplaced-scaffold na na AMPZ03000123.1 = NW_026137117.1 Primary Assembly 97803 na HiC_scaffold_436 unplaced-scaffold na na AMPZ03000124.1 = NW_026137118.1 Primary Assembly 60748 na HiC_scaffold_438 unplaced-scaffold na na AMPZ03000125.1 = NW_026137119.1 Primary Assembly 87995 na HiC_scaffold_439 unplaced-scaffold na na AMPZ03000126.1 = NW_026137120.1 Primary Assembly 14908 na HiC_scaffold_443 unplaced-scaffold na na AMPZ03000127.1 = NW_026137121.1 Primary Assembly 83163 na HiC_scaffold_447 unplaced-scaffold na na AMPZ03000128.1 = NW_026137122.1 Primary Assembly 22761 na HiC_scaffold_451 unplaced-scaffold na na AMPZ03000129.1 = NW_026137123.1 Primary Assembly 42673 na HiC_scaffold_454 unplaced-scaffold na na AMPZ03000130.1 = NW_026137124.1 Primary Assembly 32392 na HiC_scaffold_464 unplaced-scaffold na na AMPZ03000131.1 = NW_026137125.1 Primary Assembly 35387 na HiC_scaffold_465 unplaced-scaffold na na AMPZ03000132.1 = NW_026137126.1 Primary Assembly 33278 na HiC_scaffold_466 unplaced-scaffold na na AMPZ03000133.1 = NW_026137127.1 Primary Assembly 8665 na HiC_scaffold_467 unplaced-scaffold na na AMPZ03000134.1 = NW_026137128.1 Primary Assembly 28415 na HiC_scaffold_470 unplaced-scaffold na na AMPZ03000135.1 = NW_026137129.1 Primary Assembly 22544 na HiC_scaffold_471 unplaced-scaffold na na AMPZ03000136.1 = NW_026137130.1 Primary Assembly 21443 na HiC_scaffold_472 unplaced-scaffold na na AMPZ03000137.1 = NW_026137131.1 Primary Assembly 17500 na HiC_scaffold_477 unplaced-scaffold na na AMPZ03000138.1 = NW_026137132.1 Primary Assembly 10159 na HiC_scaffold_495 unplaced-scaffold na na AMPZ03000139.1 = NW_026137133.1 Primary Assembly 4521 na HiC_scaffold_506 unplaced-scaffold na na AMPZ03000140.1 = NW_026137134.1 Primary Assembly 72998 na HiC_scaffold_514 unplaced-scaffold na na AMPZ03000141.1 = NW_026137135.1 Primary Assembly 49932 na HiC_scaffold_517 unplaced-scaffold na na AMPZ03000142.1 = NW_026137136.1 Primary Assembly 24727 na HiC_scaffold_518 unplaced-scaffold na na AMPZ03000143.1 = NW_026137137.1 Primary Assembly 29714 na HiC_scaffold_520 unplaced-scaffold na na AMPZ03000144.1 = NW_026137138.1 Primary Assembly 24861 na HiC_scaffold_521 unplaced-scaffold na na AMPZ03000145.1 = NW_026137139.1 Primary Assembly 34053 na HiC_scaffold_526 unplaced-scaffold na na AMPZ03000146.1 = NW_026137140.1 Primary Assembly 24738 na HiC_scaffold_528 unplaced-scaffold na na AMPZ03000147.1 = NW_026137141.1 Primary Assembly 19789 na HiC_scaffold_530 unplaced-scaffold na na AMPZ03000148.1 = NW_026137142.1 Primary Assembly 27700 na HiC_scaffold_531 unplaced-scaffold na na AMPZ03000149.1 = NW_026137143.1 Primary Assembly 25138 na HiC_scaffold_532 unplaced-scaffold na na AMPZ03000150.1 = NW_026137144.1 Primary Assembly 25001 na HiC_scaffold_539 unplaced-scaffold na na AMPZ03000151.1 = NW_026137145.1 Primary Assembly 25179 na HiC_scaffold_541 unplaced-scaffold na na AMPZ03000152.1 = NW_026137146.1 Primary Assembly 18339 na HiC_scaffold_542 unplaced-scaffold na na AMPZ03000153.1 = NW_026137147.1 Primary Assembly 24637 na HiC_scaffold_544 unplaced-scaffold na na AMPZ03000154.1 = NW_026137148.1 Primary Assembly 21994 na HiC_scaffold_545 unplaced-scaffold na na AMPZ03000155.1 = NW_026137149.1 Primary Assembly 5000 na HiC_scaffold_546 unplaced-scaffold na na AMPZ03000156.1 = NW_026137150.1 Primary Assembly 75174 na HiC_scaffold_549 unplaced-scaffold na na AMPZ03000157.1 = NW_026137151.1 Primary Assembly 98039 na HiC_scaffold_551 unplaced-scaffold na na AMPZ03000158.1 = NW_026137152.1 Primary Assembly 38927 na HiC_scaffold_553 unplaced-scaffold na na AMPZ03000159.1 = NW_026137153.1 Primary Assembly 24615 na HiC_scaffold_555 unplaced-scaffold na na AMPZ03000160.1 = NW_026137154.1 Primary Assembly 24981 na HiC_scaffold_557 unplaced-scaffold na na AMPZ03000161.1 = NW_026137155.1 Primary Assembly 125445 na HiC_scaffold_558 unplaced-scaffold na na AMPZ03000162.1 = NW_026137156.1 Primary Assembly 29699 na HiC_scaffold_559 unplaced-scaffold na na AMPZ03000163.1 = NW_026137157.1 Primary Assembly 37825 na