# Assembly name: ASM74005v1 # Organism name: Secundilactobacillus oryzae JCM 18671 (firmicutes) # Infraspecific name: strain=SG293 # Taxid: 1291743 # BioSample: SAMD00000345 # BioProject: PRJDB1101 # Submitter: National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science # Date: 2014-07-31 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: BBJM01 # Assembly method: Platanus v. 1.2.1 # Genome coverage: 1100x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000740055.1 # RefSeq assembly accession: GCF_000740055.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000740065.1 GCF_000740065.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name BBJM01000001.1 unplaced-scaffold na na BBJM01000001.1 = NZ_BBJM01000001.1 Primary Assembly 153818 na BBJM01000002.1 unplaced-scaffold na na BBJM01000002.1 = NZ_BBJM01000002.1 Primary Assembly 100139 na BBJM01000003.1 unplaced-scaffold na na BBJM01000003.1 = NZ_BBJM01000003.1 Primary Assembly 97560 na BBJM01000004.1 unplaced-scaffold na na BBJM01000004.1 = NZ_BBJM01000004.1 Primary Assembly 73799 na BBJM01000005.1 unplaced-scaffold na na BBJM01000005.1 = NZ_BBJM01000005.1 Primary Assembly 70990 na BBJM01000006.1 unplaced-scaffold na na BBJM01000006.1 = NZ_BBJM01000006.1 Primary Assembly 67137 na BBJM01000007.1 unplaced-scaffold na na BBJM01000007.1 = NZ_BBJM01000007.1 Primary Assembly 62647 na BBJM01000008.1 unplaced-scaffold na na BBJM01000008.1 = NZ_BBJM01000008.1 Primary Assembly 61871 na BBJM01000009.1 unplaced-scaffold na na BBJM01000009.1 = NZ_BBJM01000009.1 Primary Assembly 56442 na BBJM01000010.1 unplaced-scaffold na na BBJM01000010.1 = NZ_BBJM01000010.1 Primary Assembly 54522 na BBJM01000011.1 unplaced-scaffold na na BBJM01000011.1 = NZ_BBJM01000011.1 Primary Assembly 48451 na BBJM01000012.1 unplaced-scaffold na na BBJM01000012.1 = NZ_BBJM01000012.1 Primary Assembly 47939 na BBJM01000013.1 unplaced-scaffold na na BBJM01000013.1 = NZ_BBJM01000013.1 Primary Assembly 47922 na BBJM01000014.1 unplaced-scaffold na na BBJM01000014.1 = NZ_BBJM01000014.1 Primary Assembly 47364 na BBJM01000015.1 unplaced-scaffold na na BBJM01000015.1 = NZ_BBJM01000015.1 Primary Assembly 47196 na BBJM01000016.1 unplaced-scaffold na na BBJM01000016.1 = NZ_BBJM01000016.1 Primary Assembly 46680 na BBJM01000017.1 unplaced-scaffold na na BBJM01000017.1 = NZ_BBJM01000017.1 Primary Assembly 44385 na BBJM01000018.1 unplaced-scaffold na na BBJM01000018.1 = NZ_BBJM01000018.1 Primary Assembly 42028 na BBJM01000019.1 unplaced-scaffold na na BBJM01000019.1 = NZ_BBJM01000019.1 Primary Assembly 40643 na BBJM01000020.1 unplaced-scaffold na na BBJM01000020.1 = NZ_BBJM01000020.1 Primary Assembly 40199 na BBJM01000021.1 unplaced-scaffold na na BBJM01000021.1 = NZ_BBJM01000021.1 Primary Assembly 39851 na BBJM01000022.1 unplaced-scaffold na na BBJM01000022.1 = NZ_BBJM01000022.1 Primary Assembly 37306 na BBJM01000023.1 unplaced-scaffold na na BBJM01000023.1 = NZ_BBJM01000023.1 Primary Assembly 31525 na BBJM01000024.1 unplaced-scaffold na na BBJM01000024.1 = NZ_BBJM01000024.1 Primary Assembly 30627 na BBJM01000025.1 unplaced-scaffold na na BBJM01000025.1 = NZ_BBJM01000025.1 Primary Assembly 28227 na BBJM01000026.1 unplaced-scaffold na na BBJM01000026.1 = NZ_BBJM01000026.1 Primary Assembly 25485 na BBJM01000027.1 unplaced-scaffold na na BBJM01000027.1 = NZ_BBJM01000027.1 Primary Assembly 23458 na BBJM01000028.1 unplaced-scaffold na na BBJM01000028.1 = NZ_BBJM01000028.1 Primary Assembly 23299 na BBJM01000029.1 unplaced-scaffold na na BBJM01000029.1 = NZ_BBJM01000029.1 Primary Assembly 21584 na BBJM01000030.1 unplaced-scaffold na na BBJM01000030.1 = NZ_BBJM01000030.1 Primary Assembly 19006 na BBJM01000031.1 unplaced-scaffold na na BBJM01000031.1 = NZ_BBJM01000031.1 Primary Assembly 18497 na BBJM01000032.1 unplaced-scaffold na na BBJM01000032.1 = NZ_BBJM01000032.1 Primary Assembly 16794 na BBJM01000033.1 unplaced-scaffold na na BBJM01000033.1 = NZ_BBJM01000033.1 Primary Assembly 16710 na BBJM01000034.1 unplaced-scaffold na na BBJM01000034.1 = NZ_BBJM01000034.1 Primary Assembly 16369 na BBJM01000035.1 unplaced-scaffold na na BBJM01000035.1 = NZ_BBJM01000035.1 Primary Assembly 16302 na BBJM01000036.1 unplaced-scaffold na na BBJM01000036.1 = NZ_BBJM01000036.1 Primary Assembly 14785 na BBJM01000037.1 unplaced-scaffold na na BBJM01000037.1 = NZ_BBJM01000037.1 Primary Assembly 14376 na BBJM01000038.1 unplaced-scaffold na na BBJM01000038.1 = NZ_BBJM01000038.1 Primary Assembly 14333 na BBJM01000039.1 unplaced-scaffold na na BBJM01000039.1 = NZ_BBJM01000039.1 Primary Assembly 13721 na BBJM01000040.1 unplaced-scaffold na na BBJM01000040.1 = NZ_BBJM01000040.1 Primary Assembly 12705 na BBJM01000041.1 unplaced-scaffold na na BBJM01000041.1 = NZ_BBJM01000041.1 Primary Assembly 12263 na BBJM01000042.1 unplaced-scaffold na na BBJM01000042.1 = NZ_BBJM01000042.1 Primary Assembly 12238 na BBJM01000043.1 unplaced-scaffold na na BBJM01000043.1 = NZ_BBJM01000043.1 Primary Assembly 10478 na BBJM01000044.1 unplaced-scaffold na na BBJM01000044.1 = NZ_BBJM01000044.1 Primary Assembly 10407 na BBJM01000045.1 unplaced-scaffold na na BBJM01000045.1 = NZ_BBJM01000045.1 Primary Assembly 10132 na BBJM01000046.1 unplaced-scaffold na na BBJM01000046.1 = NZ_BBJM01000046.1 Primary Assembly 9692 na BBJM01000047.1 unplaced-scaffold na na BBJM01000047.1 = NZ_BBJM01000047.1 Primary Assembly 9577 na BBJM01000048.1 unplaced-scaffold na na BBJM01000048.1 = NZ_BBJM01000048.1 Primary Assembly 9520 na BBJM01000049.1 unplaced-scaffold na na BBJM01000049.1 = NZ_BBJM01000049.1 Primary Assembly 9189 na BBJM01000050.1 unplaced-scaffold na na BBJM01000050.1 = NZ_BBJM01000050.1 Primary Assembly 7560 na BBJM01000051.1 unplaced-scaffold na na BBJM01000051.1 = NZ_BBJM01000051.1 Primary Assembly 6373 na BBJM01000052.1 unplaced-scaffold na na BBJM01000052.1 = NZ_BBJM01000052.1 Primary Assembly 5991 na BBJM01000053.1 unplaced-scaffold na na BBJM01000053.1 = NZ_BBJM01000053.1 Primary Assembly 5732 na BBJM01000054.1 unplaced-scaffold na na BBJM01000054.1 = NZ_BBJM01000054.1 Primary Assembly 5142 na BBJM01000055.1 unplaced-scaffold na na BBJM01000055.1 = NZ_BBJM01000055.1 Primary Assembly 4074 na BBJM01000056.1 unplaced-scaffold na na BBJM01000056.1 = NZ_BBJM01000056.1 Primary Assembly 4048 na BBJM01000057.1 unplaced-scaffold na na BBJM01000057.1 = NZ_BBJM01000057.1 Primary Assembly 3760 na BBJM01000058.1 unplaced-scaffold na na BBJM01000058.1 = NZ_BBJM01000058.1 Primary Assembly 3518 na BBJM01000059.1 unplaced-scaffold na na BBJM01000059.1 = NZ_BBJM01000059.1 Primary Assembly 3312 na BBJM01000060.1 unplaced-scaffold na na BBJM01000060.1 = NZ_BBJM01000060.1 Primary Assembly 3143 na BBJM01000061.1 unplaced-scaffold na na BBJM01000061.1 = NZ_BBJM01000061.1 Primary Assembly 3021 na BBJM01000062.1 unplaced-scaffold na na BBJM01000062.1 = NZ_BBJM01000062.1 Primary Assembly 2700 na BBJM01000063.1 unplaced-scaffold na na BBJM01000063.1 = NZ_BBJM01000063.1 Primary Assembly 2227 na BBJM01000064.1 unplaced-scaffold na na BBJM01000064.1 = NZ_BBJM01000064.1 Primary Assembly 1859 na BBJM01000065.1 unplaced-scaffold na na BBJM01000065.1 = NZ_BBJM01000065.1 Primary Assembly 1850 na BBJM01000066.1 unplaced-scaffold na na BBJM01000066.1 = NZ_BBJM01000066.1 Primary Assembly 1753 na BBJM01000067.1 unplaced-scaffold na na BBJM01000067.1 = NZ_BBJM01000067.1 Primary Assembly 1102 na BBJM01000068.1 unplaced-scaffold na na BBJM01000068.1 = NZ_BBJM01000068.1 Primary Assembly 988 na BBJM01000069.1 unplaced-scaffold na na BBJM01000069.1 = NZ_BBJM01000069.1 Primary Assembly 908 na BBJM01000070.1 unplaced-scaffold na na BBJM01000070.1 = NZ_BBJM01000070.1 Primary Assembly 772 na BBJM01000071.1 unplaced-scaffold na na BBJM01000071.1 = NZ_BBJM01000071.1 Primary Assembly 751 na BBJM01000072.1 unplaced-scaffold na na BBJM01000072.1 = NZ_BBJM01000072.1 Primary Assembly 724 na BBJM01000073.1 unplaced-scaffold na na BBJM01000073.1 = NZ_BBJM01000073.1 Primary Assembly 673 na BBJM01000074.1 unplaced-scaffold na na BBJM01000074.1 = NZ_BBJM01000074.1 Primary Assembly 622 na BBJM01000075.1 unplaced-scaffold na na BBJM01000075.1 = NZ_BBJM01000075.1 Primary Assembly 580 na BBJM01000076.1 unplaced-scaffold na na BBJM01000076.1 = NZ_BBJM01000076.1 Primary Assembly 574 na BBJM01000077.1 unplaced-scaffold na na BBJM01000077.1 = NZ_BBJM01000077.1 Primary Assembly 556 na BBJM01000078.1 unplaced-scaffold na na BBJM01000078.1 = NZ_BBJM01000078.1 Primary Assembly 546 na BBJM01000079.1 unplaced-scaffold na na BBJM01000079.1 = NZ_BBJM01000079.1 Primary Assembly 520 na BBJM01000080.1 unplaced-scaffold na na BBJM01000080.1 = NZ_BBJM01000080.1 Primary Assembly 455 na BBJM01000081.1 unplaced-scaffold na na BBJM01000081.1 = NZ_BBJM01000081.1 Primary Assembly 411 na BBJM01000082.1 unplaced-scaffold na na BBJM01000082.1 = NZ_BBJM01000082.1 Primary Assembly 376 na BBJM01000083.1 unplaced-scaffold na na BBJM01000083.1 = NZ_BBJM01000083.1 Primary Assembly 370 na BBJM01000084.1 unplaced-scaffold na na BBJM01000084.1 = NZ_BBJM01000084.1 Primary Assembly 353 na BBJM01000085.1 unplaced-scaffold na na BBJM01000085.1 = NZ_BBJM01000085.1 Primary Assembly 339 na BBJM01000086.1 unplaced-scaffold na na BBJM01000086.1 = NZ_BBJM01000086.1 Primary Assembly 333 na BBJM01000087.1 unplaced-scaffold na na BBJM01000087.1 = NZ_BBJM01000087.1 Primary Assembly 329 na BBJM01000088.1 unplaced-scaffold na na BBJM01000088.1 = NZ_BBJM01000088.1 Primary Assembly 319 na BBJM01000089.1 unplaced-scaffold na na BBJM01000089.1 = NZ_BBJM01000089.1 Primary Assembly 317 na BBJM01000090.1 unplaced-scaffold na na BBJM01000090.1 = NZ_BBJM01000090.1 Primary Assembly 308 na BBJM01000091.1 unplaced-scaffold na na BBJM01000091.1 = NZ_BBJM01000091.1 Primary Assembly 308 na BBJM01000092.1 unplaced-scaffold na na BBJM01000092.1 = NZ_BBJM01000092.1 Primary Assembly 306 na BBJM01000093.1 unplaced-scaffold na na BBJM01000093.1 = NZ_BBJM01000093.1 Primary Assembly 303 na