# Assembly name: ASM76380v1 # Organism name: Paracoccus sphaerophysae (a-proteobacteria) # Infraspecific name: strain=HAMBI 3106 # Taxid: 690417 # BioSample: SAMN02927208 # BioProject: PRJNA254739 # Submitter: Wadsworth Center / NYSDOH # Date: 2014-10-06 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JRKS01 # Assembly method: SPAdes v. 3.0 # Expected final version: yes # Genome coverage: 19.0x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000763805.1 # RefSeq assembly accession: GCF_000763805.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000763815.1 GCF_000763815.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Contig_1 unplaced-scaffold na na JRKS01000001.1 = NZ_JRKS01000001.1 Primary Assembly 203573 na Contig_2 unplaced-scaffold na na JRKS01000002.1 = NZ_JRKS01000002.1 Primary Assembly 158774 na Contig_3 unplaced-scaffold na na JRKS01000003.1 = NZ_JRKS01000003.1 Primary Assembly 116507 na Contig_4 unplaced-scaffold na na JRKS01000004.1 = NZ_JRKS01000004.1 Primary Assembly 89421 na Contig_5 unplaced-scaffold na na JRKS01000005.1 = NZ_JRKS01000005.1 Primary Assembly 89022 na Contig_6 unplaced-scaffold na na JRKS01000006.1 = NZ_JRKS01000006.1 Primary Assembly 87183 na Contig_7 unplaced-scaffold na na JRKS01000007.1 = NZ_JRKS01000007.1 Primary Assembly 77790 na Contig_8 unplaced-scaffold na na JRKS01000008.1 = NZ_JRKS01000008.1 Primary Assembly 74789 na Contig_9 unplaced-scaffold na na JRKS01000009.1 = NZ_JRKS01000009.1 Primary Assembly 73137 na Contig_10 unplaced-scaffold na na JRKS01000010.1 = NZ_JRKS01000010.1 Primary Assembly 69510 na Contig_11 unplaced-scaffold na na JRKS01000011.1 = NZ_JRKS01000011.1 Primary Assembly 63178 na Contig_12 unplaced-scaffold na na JRKS01000012.1 = NZ_JRKS01000012.1 Primary Assembly 63067 na Contig_13 unplaced-scaffold na na JRKS01000013.1 = NZ_JRKS01000013.1 Primary Assembly 62935 na Contig_14 unplaced-scaffold na na JRKS01000014.1 = NZ_JRKS01000014.1 Primary Assembly 58495 na Contig_15 unplaced-scaffold na na JRKS01000015.1 = NZ_JRKS01000015.1 Primary Assembly 56675 na Contig_16 unplaced-scaffold na na JRKS01000016.1 = NZ_JRKS01000016.1 Primary Assembly 56669 na Contig_17 unplaced-scaffold na na JRKS01000017.1 = NZ_JRKS01000017.1 Primary Assembly 54882 na Contig_18 unplaced-scaffold na na JRKS01000018.1 = NZ_JRKS01000018.1 Primary Assembly 53150 na Contig_19 unplaced-scaffold na na JRKS01000019.1 = NZ_JRKS01000019.1 Primary Assembly 50952 na Contig_20 unplaced-scaffold na na JRKS01000020.1 = NZ_JRKS01000020.1 Primary Assembly 50832 na Contig_21 unplaced-scaffold na na JRKS01000021.1 = NZ_JRKS01000021.1 Primary Assembly 50293 na Contig_22 unplaced-scaffold na na JRKS01000022.1 = NZ_JRKS01000022.1 Primary Assembly 42985 na Contig_23 unplaced-scaffold na na JRKS01000023.1 = NZ_JRKS01000023.1 Primary Assembly 41375 na Contig_24 unplaced-scaffold na na JRKS01000024.1 = NZ_JRKS01000024.1 Primary Assembly 40655 na Contig_25 unplaced-scaffold na na JRKS01000025.1 = NZ_JRKS01000025.1 Primary Assembly 39455 na Contig_26 unplaced-scaffold na na JRKS01000026.1 = NZ_JRKS01000026.1 Primary Assembly 39159 na Contig_27 unplaced-scaffold na na JRKS01000027.1 = NZ_JRKS01000027.1 Primary Assembly 37848 na Contig_28 unplaced-scaffold na na JRKS01000028.1 = NZ_JRKS01000028.1 Primary Assembly 37835 na Contig_29 unplaced-scaffold na na JRKS01000029.1 = NZ_JRKS01000029.1 Primary Assembly 36701 na Contig_30 unplaced-scaffold na na JRKS01000030.1 = NZ_JRKS01000030.1 Primary Assembly 35117 na Contig_31 unplaced-scaffold na na JRKS01000031.1 = NZ_JRKS01000031.1 Primary Assembly 34885 na Contig_32 unplaced-scaffold na na JRKS01000032.1 = NZ_JRKS01000032.1 Primary Assembly 34061 na Contig_33 unplaced-scaffold na na JRKS01000033.1 = NZ_JRKS01000033.1 Primary Assembly 34041 na Contig_34 unplaced-scaffold na na JRKS01000034.1 = NZ_JRKS01000034.1 Primary Assembly 33253 na Contig_35 unplaced-scaffold na na JRKS01000035.1 = NZ_JRKS01000035.1 Primary Assembly 30705 na Contig_36 unplaced-scaffold na na JRKS01000036.1 = NZ_JRKS01000036.1 Primary Assembly 30493 na Contig_37 unplaced-scaffold na na JRKS01000037.1 = NZ_JRKS01000037.1 Primary Assembly 30085 na Contig_38 unplaced-scaffold na na JRKS01000038.1 = NZ_JRKS01000038.1 Primary Assembly 30055 na Contig_39 unplaced-scaffold na na JRKS01000039.1 = NZ_JRKS01000039.1 Primary Assembly 29419 na Contig_40 unplaced-scaffold na na JRKS01000040.1 = NZ_JRKS01000040.1 Primary Assembly 28396 na Contig_41 unplaced-scaffold na na JRKS01000041.1 = NZ_JRKS01000041.1 Primary Assembly 27899 na Contig_42 unplaced-scaffold na na JRKS01000042.1 = NZ_JRKS01000042.1 Primary Assembly 26276 na Contig_43 unplaced-scaffold na na JRKS01000043.1 = NZ_JRKS01000043.1 Primary Assembly 25543 na Contig_44 unplaced-scaffold na na JRKS01000044.1 = NZ_JRKS01000044.1 Primary Assembly 24828 na Contig_45 unplaced-scaffold na na JRKS01000045.1 = NZ_JRKS01000045.1 Primary Assembly 23527 na Contig_46 unplaced-scaffold na na JRKS01000046.1 = NZ_JRKS01000046.1 Primary Assembly 23259 na Contig_47 unplaced-scaffold na na JRKS01000047.1 = NZ_JRKS01000047.1 Primary Assembly 23206 na Contig_48 unplaced-scaffold na na JRKS01000048.1 = NZ_JRKS01000048.1 Primary Assembly 23014 na Contig_49 unplaced-scaffold na na JRKS01000049.1 = NZ_JRKS01000049.1 Primary Assembly 23006 na Contig_50 unplaced-scaffold na na JRKS01000050.1 = NZ_JRKS01000050.1 Primary Assembly 20752 na Contig_51 unplaced-scaffold na na JRKS01000051.1 = NZ_JRKS01000051.1 Primary Assembly 20129 na Contig_52 unplaced-scaffold na na JRKS01000052.1 = NZ_JRKS01000052.1 Primary Assembly 20042 na Contig_53 unplaced-scaffold na na JRKS01000053.1 = NZ_JRKS01000053.1 Primary Assembly 19916 na Contig_54 unplaced-scaffold na na JRKS01000054.1 = NZ_JRKS01000054.1 Primary Assembly 19809 na Contig_55 unplaced-scaffold na na JRKS01000055.1 = NZ_JRKS01000055.1 Primary Assembly 18742 na Contig_56 unplaced-scaffold na na JRKS01000056.1 = NZ_JRKS01000056.1 Primary Assembly 18296 na Contig_57 unplaced-scaffold na na JRKS01000057.1 = NZ_JRKS01000057.1 Primary Assembly 18168 na Contig_58 unplaced-scaffold na na JRKS01000058.1 = NZ_JRKS01000058.1 Primary Assembly 18111 na Contig_59 unplaced-scaffold na na JRKS01000059.1 = NZ_JRKS01000059.1 Primary Assembly 16851 na Contig_60 unplaced-scaffold na na JRKS01000060.1 = NZ_JRKS01000060.1 Primary Assembly 16809 na Contig_61 unplaced-scaffold na na JRKS01000061.1 = NZ_JRKS01000061.1 Primary Assembly 16740 na Contig_62 unplaced-scaffold na na JRKS01000062.1 = NZ_JRKS01000062.1 Primary Assembly 16732 na Contig_63 unplaced-scaffold na na JRKS01000063.1 = NZ_JRKS01000063.1 Primary Assembly 16487 na Contig_64 unplaced-scaffold na na JRKS01000064.1 = NZ_JRKS01000064.1 Primary Assembly 16451 na Contig_65 unplaced-scaffold na na JRKS01000065.1 = NZ_JRKS01000065.1 Primary Assembly 16275 na Contig_66 unplaced-scaffold na na JRKS01000066.1 = NZ_JRKS01000066.1 Primary Assembly 15730 na Contig_67 unplaced-scaffold na na JRKS01000067.1 = NZ_JRKS01000067.1 Primary Assembly 15594 na Contig_68 unplaced-scaffold na na JRKS01000068.1 = NZ_JRKS01000068.1 Primary Assembly 15589 na Contig_69 unplaced-scaffold na na JRKS01000069.1 = NZ_JRKS01000069.1 Primary Assembly 14677 na Contig_70 unplaced-scaffold na na JRKS01000070.1 = NZ_JRKS01000070.1 Primary Assembly 14268 na Contig_71 unplaced-scaffold na na JRKS01000071.1 = NZ_JRKS01000071.1 Primary Assembly 14092 na Contig_72 unplaced-scaffold na na JRKS01000072.1 = NZ_JRKS01000072.1 Primary Assembly 14052 na Contig_73 unplaced-scaffold na na JRKS01000073.1 = NZ_JRKS01000073.1 Primary Assembly 13012 na Contig_74 unplaced-scaffold na na JRKS01000074.1 = NZ_JRKS01000074.1 Primary Assembly 13006 na Contig_75 unplaced-scaffold na na JRKS01000075.1 = NZ_JRKS01000075.1 Primary Assembly 12682 na Contig_76 unplaced-scaffold na na JRKS01000076.1 = NZ_JRKS01000076.1 Primary Assembly 12384 na Contig_77 unplaced-scaffold na na JRKS01000077.1 = NZ_JRKS01000077.1 Primary Assembly 12312 na Contig_78 unplaced-scaffold na na JRKS01000078.1 = NZ_JRKS01000078.1 Primary Assembly 12232 na Contig_79 unplaced-scaffold na na JRKS01000079.1 = NZ_JRKS01000079.1 Primary Assembly 11998 na Contig_80 unplaced-scaffold na na JRKS01000080.1 = NZ_JRKS01000080.1 Primary Assembly 11445 na Contig_81 unplaced-scaffold na na JRKS01000081.1 = NZ_JRKS01000081.1 Primary Assembly 11444 na Contig_82 unplaced-scaffold na na JRKS01000082.1 = NZ_JRKS01000082.1 Primary Assembly 11419 na Contig_83 unplaced-scaffold na na JRKS01000083.1 = NZ_JRKS01000083.1 Primary Assembly 11016 na Contig_84 unplaced-scaffold na na JRKS01000084.1 = NZ_JRKS01000084.1 Primary Assembly 10806 na Contig_85 unplaced-scaffold na na JRKS01000085.1 = NZ_JRKS01000085.1 Primary Assembly 10782 na Contig_86 unplaced-scaffold na na JRKS01000086.1 = NZ_JRKS01000086.1 Primary Assembly 10588 na Contig_87 unplaced-scaffold na na JRKS01000087.1 = NZ_JRKS01000087.1 Primary Assembly 10274 na Contig_88 unplaced-scaffold na na JRKS01000088.1 = NZ_JRKS01000088.1 Primary Assembly 9562 na Contig_89 unplaced-scaffold na na JRKS01000089.1 = NZ_JRKS01000089.1 Primary Assembly 9428 na Contig_90 unplaced-scaffold na na JRKS01000090.1 = NZ_JRKS01000090.1 Primary Assembly 8753 na Contig_91 unplaced-scaffold na na JRKS01000091.1 = NZ_JRKS01000091.1 Primary Assembly 8664 na Contig_92 unplaced-scaffold na na JRKS01000092.1 = NZ_JRKS01000092.1 Primary Assembly 8657 na Contig_93 unplaced-scaffold na na JRKS01000093.1 = NZ_JRKS01000093.1 Primary Assembly 8312 na Contig_94 unplaced-scaffold na na JRKS01000094.1 = NZ_JRKS01000094.1 Primary Assembly 8231 na Contig_95 unplaced-scaffold na na JRKS01000095.1 = NZ_JRKS01000095.1 Primary Assembly 8106 na Contig_96 unplaced-scaffold na na JRKS01000096.1 = NZ_JRKS01000096.1 Primary Assembly 7953 na Contig_97 unplaced-scaffold na na JRKS01000097.1 = NZ_JRKS01000097.1 Primary Assembly 7905 na Contig_98 unplaced-scaffold na na JRKS01000098.1 = NZ_JRKS01000098.1 Primary Assembly 7662 na Contig_99 unplaced-scaffold na na JRKS01000099.1 = NZ_JRKS01000099.1 Primary Assembly 7377 na Contig_100 unplaced-scaffold na na JRKS01000100.1 = NZ_JRKS01000100.1 Primary Assembly 7287 na Contig_101 unplaced-scaffold na na JRKS01000101.1 = NZ_JRKS01000101.1 Primary Assembly 7264 na Contig_102 unplaced-scaffold na na JRKS01000102.1 = NZ_JRKS01000102.1 Primary Assembly 7249 na Contig_103 unplaced-scaffold na na JRKS01000103.1 = NZ_JRKS01000103.1 Primary Assembly 7162 na Contig_104 unplaced-scaffold na na JRKS01000104.1 = NZ_JRKS01000104.1 Primary Assembly 6748 na Contig_105 unplaced-scaffold na na JRKS01000105.1 = NZ_JRKS01000105.1 Primary Assembly 6396 na Contig_106 unplaced-scaffold na na JRKS01000106.1 = NZ_JRKS01000106.1 Primary Assembly 6269 na Contig_107 unplaced-scaffold na na JRKS01000107.1 = NZ_JRKS01000107.1 Primary Assembly 6232 na Contig_108 unplaced-scaffold na na JRKS01000108.1 = NZ_JRKS01000108.1 Primary Assembly 6155 na Contig_109 unplaced-scaffold na na JRKS01000109.1 = NZ_JRKS01000109.1 Primary Assembly 6108 na Contig_110 unplaced-scaffold na na JRKS01000110.1 = NZ_JRKS01000110.1 Primary Assembly 5757 na Contig_111 unplaced-scaffold na na JRKS01000111.1 = NZ_JRKS01000111.1 Primary Assembly 5554 na Contig_112 unplaced-scaffold na na JRKS01000112.1 = NZ_JRKS01000112.1 Primary Assembly 5391 na Contig_113 unplaced-scaffold na na JRKS01000113.1 = NZ_JRKS01000113.1 Primary Assembly 4929 na Contig_114 unplaced-scaffold na na JRKS01000114.1 = NZ_JRKS01000114.1 Primary Assembly 4532 na Contig_115 unplaced-scaffold na na JRKS01000115.1 = NZ_JRKS01000115.1 Primary Assembly 4380 na Contig_116 unplaced-scaffold na na JRKS01000116.1 = NZ_JRKS01000116.1 Primary Assembly 4075 na Contig_117 unplaced-scaffold na na JRKS01000117.1 = NZ_JRKS01000117.1 Primary Assembly 4006 na Contig_118 unplaced-scaffold na na JRKS01000118.1 = NZ_JRKS01000118.1 Primary Assembly 3902 na Contig_119 unplaced-scaffold na na JRKS01000119.1 = NZ_JRKS01000119.1 Primary Assembly 3859 na Contig_120 unplaced-scaffold na na JRKS01000120.1 = NZ_JRKS01000120.1 Primary Assembly 3433 na Contig_121 unplaced-scaffold na na JRKS01000121.1 = NZ_JRKS01000121.1 Primary Assembly 2981 na Contig_122 unplaced-scaffold na na JRKS01000122.1 = NZ_JRKS01000122.1 Primary Assembly 2473 na Contig_123 unplaced-scaffold na na JRKS01000123.1 = NZ_JRKS01000123.1 Primary Assembly 2422 na Contig_124 unplaced-scaffold na na JRKS01000124.1 = NZ_JRKS01000124.1 Primary Assembly 2307 na Contig_125 unplaced-scaffold na na JRKS01000125.1 = NZ_JRKS01000125.1 Primary Assembly 2017 na Contig_126 unplaced-scaffold na na JRKS01000126.1 = NZ_JRKS01000126.1 Primary Assembly 1783 na Contig_127 unplaced-scaffold na na JRKS01000127.1 = NZ_JRKS01000127.1 Primary Assembly 1413 na Contig_128 unplaced-scaffold na na JRKS01000128.1 = NZ_JRKS01000128.1 Primary Assembly 1250 na Contig_129 unplaced-scaffold na na JRKS01000129.1 = NZ_JRKS01000129.1 Primary Assembly 1189 na Contig_130 unplaced-scaffold na na JRKS01000130.1 = NZ_JRKS01000130.1 Primary Assembly 1039 na Contig_131 unplaced-scaffold na na JRKS01000131.1 = NZ_JRKS01000131.1 Primary Assembly 904 na Contig_133 unplaced-scaffold na na JRKS01000132.1 = NZ_JRKS01000132.1 Primary Assembly 828 na Contig_134 unplaced-scaffold na na JRKS01000133.1 = NZ_JRKS01000133.1 Primary Assembly 813 na Contig_135 unplaced-scaffold na na JRKS01000134.1 = NZ_JRKS01000134.1 Primary Assembly 788 na Contig_139 unplaced-scaffold na na JRKS01000135.1 = NZ_JRKS01000135.1 Primary Assembly 595 na Contig_145 unplaced-scaffold na na JRKS01000136.1 = NZ_JRKS01000136.1 Primary Assembly 493 na Contig_146 unplaced-scaffold na na JRKS01000137.1 = NZ_JRKS01000137.1 Primary Assembly 487 na