# Assembly name: ASM76582v2 # Organism name: Helicobacter magdeburgensis (e-proteobacteria) # Infraspecific name: strain=MIT 96-1001 # Taxid: 471858 # BioSample: SAMN03075564 # BioProject: PRJNA261711 # Submitter: Massachusetts Institute of Technology # Date: 2019-05-22 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JRPE02 # Assembly method: SPAdes v. PATRIC March 2017 # Expected final version: no # Genome coverage: 112.8242118x # Sequencing technology: Illumina MiSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000765825.2 # RefSeq assembly accession: GCF_000765825.2 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000765835.2 GCF_000765835.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1_length_216090_cov_45.4168 unplaced-scaffold na na JRPE02000001.1 = NZ_JRPE02000001.1 Primary Assembly 216090 na NODE_2_length_214176_cov_36.5952 unplaced-scaffold na na JRPE02000002.1 = NZ_JRPE02000002.1 Primary Assembly 214176 na NODE_3_length_212654_cov_48.6186 unplaced-scaffold na na JRPE02000003.1 = NZ_JRPE02000003.1 Primary Assembly 212654 na NODE_4_length_152102_cov_42.0353 unplaced-scaffold na na JRPE02000004.1 = NZ_JRPE02000004.1 Primary Assembly 152102 na NODE_5_length_140451_cov_44.2686 unplaced-scaffold na na JRPE02000005.1 = NZ_JRPE02000005.1 Primary Assembly 140451 na NODE_6_length_128001_cov_38.9067 unplaced-scaffold na na JRPE02000006.1 = NZ_JRPE02000006.1 Primary Assembly 128001 na NODE_7_length_119742_cov_42.1797 unplaced-scaffold na na JRPE02000007.1 = NZ_JRPE02000007.1 Primary Assembly 119742 na NODE_8_length_118267_cov_45.7516 unplaced-scaffold na na JRPE02000008.1 = NZ_JRPE02000008.1 Primary Assembly 118267 na NODE_9_length_98704_cov_48.7545 unplaced-scaffold na na JRPE02000009.1 = NZ_JRPE02000009.1 Primary Assembly 98704 na NODE_10_length_94214_cov_43.1389 unplaced-scaffold na na JRPE02000010.1 = NZ_JRPE02000010.1 Primary Assembly 94214 na NODE_11_length_74265_cov_43.052 unplaced-scaffold na na JRPE02000011.1 = NZ_JRPE02000011.1 Primary Assembly 74265 na NODE_12_length_59025_cov_46.8838 unplaced-scaffold na na JRPE02000012.1 = NZ_JRPE02000012.1 Primary Assembly 59025 na NODE_13_length_51689_cov_37.2617 unplaced-scaffold na na JRPE02000013.1 = NZ_JRPE02000013.1 Primary Assembly 51689 na NODE_14_length_50869_cov_41.4889 unplaced-scaffold na na JRPE02000014.1 = NZ_JRPE02000014.1 Primary Assembly 50869 na NODE_15_length_40530_cov_32.1938 unplaced-scaffold na na JRPE02000015.1 = NZ_JRPE02000015.1 Primary Assembly 40530 na NODE_16_length_32710_cov_40.1984 unplaced-scaffold na na JRPE02000016.1 = NZ_JRPE02000016.1 Primary Assembly 32710 na NODE_17_length_31399_cov_269.939 unplaced-scaffold na na JRPE02000017.1 = NZ_JRPE02000017.1 Primary Assembly 31399 na NODE_18_length_27590_cov_39.4601 unplaced-scaffold na na JRPE02000018.1 = NZ_JRPE02000018.1 Primary Assembly 27590 na NODE_19_length_26944_cov_44.2421 unplaced-scaffold na na JRPE02000019.1 = NZ_JRPE02000019.1 Primary Assembly 26944 na NODE_20_length_25139_cov_100.572 unplaced-scaffold na na JRPE02000020.1 = NZ_JRPE02000020.1 Primary Assembly 25139 na NODE_21_length_24815_cov_48.0411 unplaced-scaffold na na JRPE02000021.1 = NZ_JRPE02000021.1 Primary Assembly 24815 na NODE_22_length_17441_cov_110.05 unplaced-scaffold na na JRPE02000022.1 = NZ_JRPE02000022.1 Primary Assembly 17441 na NODE_23_length_12551_cov_235.64 unplaced-scaffold na na JRPE02000023.1 = NZ_JRPE02000023.1 Primary Assembly 12551 na NODE_24_length_11885_cov_42.6645 unplaced-scaffold na na JRPE02000024.1 = NZ_JRPE02000024.1 Primary Assembly 11885 na NODE_25_length_9869_cov_236.301 unplaced-scaffold na na JRPE02000025.1 = NZ_JRPE02000025.1 Primary Assembly 9869 na NODE_26_length_9291_cov_118.978 unplaced-scaffold na na JRPE02000026.1 = NZ_JRPE02000026.1 Primary Assembly 9291 na NODE_27_length_9200_cov_268.766 unplaced-scaffold na na JRPE02000027.1 = NZ_JRPE02000027.1 Primary Assembly 9200 na NODE_28_length_8591_cov_40.2345 unplaced-scaffold na na JRPE02000028.1 = NZ_JRPE02000028.1 Primary Assembly 8591 na NODE_29_length_7372_cov_70.4066 unplaced-scaffold na na JRPE02000029.1 = NZ_JRPE02000029.1 Primary Assembly 7372 na NODE_30_length_6610_cov_44.6352 unplaced-scaffold na na JRPE02000030.1 = NZ_JRPE02000030.1 Primary Assembly 6610 na NODE_31_length_4733_cov_41.6806 unplaced-scaffold na na JRPE02000031.1 = NZ_JRPE02000031.1 Primary Assembly 4733 na NODE_32_length_4363_cov_50.1006 unplaced-scaffold na na JRPE02000032.1 = NZ_JRPE02000032.1 Primary Assembly 4363 na NODE_33_length_4281_cov_1930.36 unplaced-scaffold na na JRPE02000033.1 = NZ_JRPE02000033.1 Primary Assembly 4281 na NODE_34_length_2857_cov_50.7331 unplaced-scaffold na na JRPE02000034.1 = NZ_JRPE02000034.1 Primary Assembly 2857 na NODE_35_length_2514_cov_49.4807 unplaced-scaffold na na JRPE02000035.1 = NZ_JRPE02000035.1 Primary Assembly 2514 na NODE_36_length_2446_cov_3478.93 unplaced-scaffold na na JRPE02000036.1 = NZ_JRPE02000036.1 Primary Assembly 2446 na NODE_37_length_2285_cov_44.683 unplaced-scaffold na na JRPE02000037.1 = NZ_JRPE02000037.1 Primary Assembly 2285 na NODE_38_length_2040_cov_581.338 unplaced-scaffold na na JRPE02000038.1 = NZ_JRPE02000038.1 Primary Assembly 2040 na NODE_39_length_1963_cov_41.8938 unplaced-scaffold na na JRPE02000039.1 = NZ_JRPE02000039.1 Primary Assembly 1963 na NODE_40_length_1697_cov_84.5695 unplaced-scaffold na na JRPE02000040.1 = NZ_JRPE02000040.1 Primary Assembly 1697 na NODE_41_length_1450_cov_48.5189 unplaced-scaffold na na JRPE02000041.1 = NZ_JRPE02000041.1 Primary Assembly 1450 na NODE_42_length_1373_cov_113.129 unplaced-scaffold na na JRPE02000042.1 = NZ_JRPE02000042.1 Primary Assembly 1373 na NODE_44_length_1100_cov_42.8882 unplaced-scaffold na na JRPE02000043.1 = NZ_JRPE02000043.1 Primary Assembly 1100 na NODE_45_length_952_cov_77.585 unplaced-scaffold na na JRPE02000044.1 = NZ_JRPE02000044.1 Primary Assembly 952 na NODE_46_length_864_cov_72.5856 unplaced-scaffold na na JRPE02000045.1 = NZ_JRPE02000045.1 Primary Assembly 864 na NODE_53_length_730_cov_2341.73 unplaced-scaffold na na JRPE02000046.1 = NZ_JRPE02000046.1 Primary Assembly 730 na NODE_54_length_725_cov_55.016 unplaced-scaffold na na JRPE02000047.1 = NZ_JRPE02000047.1 Primary Assembly 725 na NODE_56_length_722_cov_32.9326 unplaced-scaffold na na JRPE02000048.1 = NZ_JRPE02000048.1 Primary Assembly 722 na NODE_63_length_645_cov_134.868 unplaced-scaffold na na JRPE02000049.1 = NZ_JRPE02000049.1 Primary Assembly 645 na NODE_65_length_632_cov_117.863 unplaced-scaffold na na JRPE02000050.1 = NZ_JRPE02000050.1 Primary Assembly 632 na NODE_66_length_631_cov_62.1711 unplaced-scaffold na na JRPE02000051.1 = NZ_JRPE02000051.1 Primary Assembly 631 na NODE_67_length_623_cov_231.221 unplaced-scaffold na na JRPE02000052.1 = NZ_JRPE02000052.1 Primary Assembly 623 na NODE_69_length_617_cov_3774.88 unplaced-scaffold na na JRPE02000053.1 = NZ_JRPE02000053.1 Primary Assembly 617 na NODE_103_length_490_cov_1399.1 unplaced-scaffold na na JRPE02000054.1 = NZ_JRPE02000054.1 Primary Assembly 490 na NODE_109_length_478_cov_2386.71 unplaced-scaffold na na JRPE02000055.1 = NZ_JRPE02000055.1 Primary Assembly 478 na NODE_187_length_440_cov_72.088 unplaced-scaffold na na JRPE02000056.1 = NZ_JRPE02000056.1 Primary Assembly 440 na NODE_341_length_386_cov_99.3728 unplaced-scaffold na na JRPE02000057.1 = NZ_JRPE02000057.1 Primary Assembly 386 na