# Assembly name: ASM76590v2 # Organism name: Helicobacter trogontum (e-proteobacteria) # Infraspecific name: strain=ATCC 700114 # Taxid: 50960 # BioSample: SAMN03075571 # BioProject: PRJNA261711 # Submitter: Massachusetts Institute of Technology # Date: 2019-05-22 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JRPL02 # Assembly method: SPAdes v. PATRIC March 2017 # Expected final version: no # Genome coverage: 107.6110776x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000765905.2 # RefSeq assembly accession: GCF_000765905.2 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000765915.2 GCF_000765915.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1_length_201759_cov_69.9323 unplaced-scaffold na na JRPL02000001.1 = NZ_JRPL02000001.1 Primary Assembly 201759 na NODE_2_length_200793_cov_64.9156 unplaced-scaffold na na JRPL02000002.1 = NZ_JRPL02000002.1 Primary Assembly 200793 na NODE_3_length_162887_cov_51.5394 unplaced-scaffold na na JRPL02000003.1 = NZ_JRPL02000003.1 Primary Assembly 162887 na NODE_4_length_136682_cov_48.1873 unplaced-scaffold na na JRPL02000004.1 = NZ_JRPL02000004.1 Primary Assembly 136682 na NODE_5_length_119251_cov_55.3326 unplaced-scaffold na na JRPL02000005.1 = NZ_JRPL02000005.1 Primary Assembly 119251 na NODE_6_length_113921_cov_59.5376 unplaced-scaffold na na JRPL02000006.1 = NZ_JRPL02000006.1 Primary Assembly 113921 na NODE_7_length_112582_cov_45.6475 unplaced-scaffold na na JRPL02000007.1 = NZ_JRPL02000007.1 Primary Assembly 112582 na NODE_8_length_103115_cov_51.0353 unplaced-scaffold na na JRPL02000008.1 = NZ_JRPL02000008.1 Primary Assembly 103115 na NODE_9_length_87133_cov_65.8891 unplaced-scaffold na na JRPL02000009.1 = NZ_JRPL02000009.1 Primary Assembly 87133 na NODE_10_length_83802_cov_38.6013 unplaced-scaffold na na JRPL02000010.1 = NZ_JRPL02000010.1 Primary Assembly 83802 na NODE_11_length_75633_cov_54.4866 unplaced-scaffold na na JRPL02000011.1 = NZ_JRPL02000011.1 Primary Assembly 75633 na NODE_12_length_64190_cov_39.9669 unplaced-scaffold na na JRPL02000012.1 = NZ_JRPL02000012.1 Primary Assembly 64190 na NODE_13_length_50644_cov_41.8562 unplaced-scaffold na na JRPL02000013.1 = NZ_JRPL02000013.1 Primary Assembly 50644 na NODE_14_length_49139_cov_46.6942 unplaced-scaffold na na JRPL02000014.1 = NZ_JRPL02000014.1 Primary Assembly 49139 na NODE_15_length_48197_cov_47.6445 unplaced-scaffold na na JRPL02000015.1 = NZ_JRPL02000015.1 Primary Assembly 48197 na NODE_16_length_47693_cov_42.9344 unplaced-scaffold na na JRPL02000016.1 = NZ_JRPL02000016.1 Primary Assembly 47693 na NODE_17_length_47546_cov_59.2754 unplaced-scaffold na na JRPL02000017.1 = NZ_JRPL02000017.1 Primary Assembly 47546 na NODE_18_length_43737_cov_41.7377 unplaced-scaffold na na JRPL02000018.1 = NZ_JRPL02000018.1 Primary Assembly 43737 na NODE_19_length_41849_cov_38.4064 unplaced-scaffold na na JRPL02000019.1 = NZ_JRPL02000019.1 Primary Assembly 41849 na NODE_20_length_40818_cov_43.0519 unplaced-scaffold na na JRPL02000020.1 = NZ_JRPL02000020.1 Primary Assembly 40818 na NODE_21_length_40751_cov_47.6973 unplaced-scaffold na na JRPL02000021.1 = NZ_JRPL02000021.1 Primary Assembly 40751 na NODE_22_length_40604_cov_56.6266 unplaced-scaffold na na JRPL02000022.1 = NZ_JRPL02000022.1 Primary Assembly 40604 na NODE_23_length_39171_cov_61.2392 unplaced-scaffold na na JRPL02000023.1 = NZ_JRPL02000023.1 Primary Assembly 39171 na NODE_24_length_32358_cov_46.6016 unplaced-scaffold na na JRPL02000024.1 = NZ_JRPL02000024.1 Primary Assembly 32358 na NODE_25_length_32134_cov_264.97 unplaced-scaffold na na JRPL02000025.1 = NZ_JRPL02000025.1 Primary Assembly 32134 na NODE_26_length_31186_cov_44.7071 unplaced-scaffold na na JRPL02000026.1 = NZ_JRPL02000026.1 Primary Assembly 31186 na NODE_27_length_30058_cov_36.8724 unplaced-scaffold na na JRPL02000027.1 = NZ_JRPL02000027.1 Primary Assembly 30058 na NODE_28_length_22644_cov_67.6241 unplaced-scaffold na na JRPL02000028.1 = NZ_JRPL02000028.1 Primary Assembly 22644 na NODE_29_length_20889_cov_66.8062 unplaced-scaffold na na JRPL02000029.1 = NZ_JRPL02000029.1 Primary Assembly 20889 na NODE_30_length_18594_cov_69.4615 unplaced-scaffold na na JRPL02000030.1 = NZ_JRPL02000030.1 Primary Assembly 18594 na NODE_31_length_15420_cov_47.8255 unplaced-scaffold na na JRPL02000031.1 = NZ_JRPL02000031.1 Primary Assembly 15420 na NODE_32_length_14674_cov_104.723 unplaced-scaffold na na JRPL02000032.1 = NZ_JRPL02000032.1 Primary Assembly 14674 na NODE_33_length_14499_cov_105.713 unplaced-scaffold na na JRPL02000033.1 = NZ_JRPL02000033.1 Primary Assembly 14499 na NODE_34_length_13399_cov_57.153 unplaced-scaffold na na JRPL02000034.1 = NZ_JRPL02000034.1 Primary Assembly 13399 na NODE_35_length_11660_cov_58.1742 unplaced-scaffold na na JRPL02000035.1 = NZ_JRPL02000035.1 Primary Assembly 11660 na NODE_36_length_11203_cov_48.9152 unplaced-scaffold na na JRPL02000036.1 = NZ_JRPL02000036.1 Primary Assembly 11203 na NODE_37_length_10277_cov_47.9664 unplaced-scaffold na na JRPL02000037.1 = NZ_JRPL02000037.1 Primary Assembly 10277 na NODE_38_length_8992_cov_54.3051 unplaced-scaffold na na JRPL02000038.1 = NZ_JRPL02000038.1 Primary Assembly 8992 na NODE_39_length_8751_cov_40.8893 unplaced-scaffold na na JRPL02000039.1 = NZ_JRPL02000039.1 Primary Assembly 8751 na NODE_40_length_7755_cov_58.2867 unplaced-scaffold na na JRPL02000040.1 = NZ_JRPL02000040.1 Primary Assembly 7755 na NODE_41_length_7749_cov_41.2013 unplaced-scaffold na na JRPL02000041.1 = NZ_JRPL02000041.1 Primary Assembly 7749 na NODE_42_length_7598_cov_47.1071 unplaced-scaffold na na JRPL02000042.1 = NZ_JRPL02000042.1 Primary Assembly 7598 na NODE_43_length_7557_cov_99.1028 unplaced-scaffold na na JRPL02000043.1 = NZ_JRPL02000043.1 Primary Assembly 7557 na NODE_44_length_7362_cov_122.416 unplaced-scaffold na na JRPL02000044.1 = NZ_JRPL02000044.1 Primary Assembly 7362 na NODE_45_length_6965_cov_39.7156 unplaced-scaffold na na JRPL02000045.1 = NZ_JRPL02000045.1 Primary Assembly 6965 na NODE_46_length_6475_cov_41.8483 unplaced-scaffold na na JRPL02000046.1 = NZ_JRPL02000046.1 Primary Assembly 6475 na NODE_47_length_6386_cov_36.6789 unplaced-scaffold na na JRPL02000047.1 = NZ_JRPL02000047.1 Primary Assembly 6386 na NODE_48_length_6370_cov_41.5545 unplaced-scaffold na na JRPL02000048.1 = NZ_JRPL02000048.1 Primary Assembly 6370 na NODE_49_length_6196_cov_43.1855 unplaced-scaffold na na JRPL02000049.1 = NZ_JRPL02000049.1 Primary Assembly 6196 na NODE_50_length_5940_cov_111.567 unplaced-scaffold na na JRPL02000050.1 = NZ_JRPL02000050.1 Primary Assembly 5940 na NODE_51_length_5753_cov_44.5585 unplaced-scaffold na na JRPL02000051.1 = NZ_JRPL02000051.1 Primary Assembly 5753 na NODE_52_length_5408_cov_72.0365 unplaced-scaffold na na JRPL02000052.1 = NZ_JRPL02000052.1 Primary Assembly 5408 na NODE_53_length_4810_cov_52.3021 unplaced-scaffold na na JRPL02000053.1 = NZ_JRPL02000053.1 Primary Assembly 4810 na NODE_54_length_4527_cov_106.633 unplaced-scaffold na na JRPL02000054.1 = NZ_JRPL02000054.1 Primary Assembly 4527 na NODE_55_length_4516_cov_53.9846 unplaced-scaffold na na JRPL02000055.1 = NZ_JRPL02000055.1 Primary Assembly 4516 na NODE_56_length_4407_cov_147.529 unplaced-scaffold na na JRPL02000056.1 = NZ_JRPL02000056.1 Primary Assembly 4407 na NODE_57_length_4032_cov_119.831 unplaced-scaffold na na JRPL02000057.1 = NZ_JRPL02000057.1 Primary Assembly 4032 na NODE_58_length_3516_cov_48.1276 unplaced-scaffold na na JRPL02000058.1 = NZ_JRPL02000058.1 Primary Assembly 3516 na NODE_59_length_3491_cov_47.3387 unplaced-scaffold na na JRPL02000059.1 = NZ_JRPL02000059.1 Primary Assembly 3491 na NODE_60_length_3422_cov_101.27 unplaced-scaffold na na JRPL02000060.1 = NZ_JRPL02000060.1 Primary Assembly 3422 na NODE_61_length_3210_cov_106.109 unplaced-scaffold na na JRPL02000061.1 = NZ_JRPL02000061.1 Primary Assembly 3210 na NODE_62_length_3146_cov_81.4946 unplaced-scaffold na na JRPL02000062.1 = NZ_JRPL02000062.1 Primary Assembly 3146 na NODE_63_length_2828_cov_138.519 unplaced-scaffold na na JRPL02000063.1 = NZ_JRPL02000063.1 Primary Assembly 2828 na NODE_64_length_2738_cov_36.5638 unplaced-scaffold na na JRPL02000064.1 = NZ_JRPL02000064.1 Primary Assembly 2738 na NODE_65_length_2714_cov_54.8562 unplaced-scaffold na na JRPL02000065.1 = NZ_JRPL02000065.1 Primary Assembly 2714 na NODE_66_length_2601_cov_42.3501 unplaced-scaffold na na JRPL02000066.1 = NZ_JRPL02000066.1 Primary Assembly 2601 na NODE_67_length_2404_cov_46.095 unplaced-scaffold na na JRPL02000067.1 = NZ_JRPL02000067.1 Primary Assembly 2404 na NODE_68_length_2360_cov_49.425 unplaced-scaffold na na JRPL02000068.1 = NZ_JRPL02000068.1 Primary Assembly 2360 na NODE_69_length_2236_cov_36.1282 unplaced-scaffold na na JRPL02000069.1 = NZ_JRPL02000069.1 Primary Assembly 2236 na NODE_70_length_2192_cov_92.8347 unplaced-scaffold na na JRPL02000070.1 = NZ_JRPL02000070.1 Primary Assembly 2192 na NODE_71_length_2152_cov_105.277 unplaced-scaffold na na JRPL02000071.1 = NZ_JRPL02000071.1 Primary Assembly 2152 na NODE_72_length_2037_cov_101.36 unplaced-scaffold na na JRPL02000072.1 = NZ_JRPL02000072.1 Primary Assembly 2037 na NODE_73_length_2037_cov_41.5108 unplaced-scaffold na na JRPL02000073.1 = NZ_JRPL02000073.1 Primary Assembly 2037 na NODE_74_length_2005_cov_208.14 unplaced-scaffold na na JRPL02000074.1 = NZ_JRPL02000074.1 Primary Assembly 2005 na NODE_75_length_1869_cov_51.3893 unplaced-scaffold na na JRPL02000075.1 = NZ_JRPL02000075.1 Primary Assembly 1869 na NODE_76_length_1833_cov_281.527 unplaced-scaffold na na JRPL02000076.1 = NZ_JRPL02000076.1 Primary Assembly 1833 na NODE_77_length_1792_cov_149.951 unplaced-scaffold na na JRPL02000077.1 = NZ_JRPL02000077.1 Primary Assembly 1792 na NODE_78_length_1732_cov_109.345 unplaced-scaffold na na JRPL02000078.1 = NZ_JRPL02000078.1 Primary Assembly 1732 na NODE_79_length_1615_cov_36.6933 unplaced-scaffold na na JRPL02000079.1 = NZ_JRPL02000079.1 Primary Assembly 1615 na NODE_80_length_1578_cov_94.6011 unplaced-scaffold na na JRPL02000080.1 = NZ_JRPL02000080.1 Primary Assembly 1578 na NODE_81_length_1571_cov_51.4008 unplaced-scaffold na na JRPL02000081.1 = NZ_JRPL02000081.1 Primary Assembly 1571 na NODE_82_length_1520_cov_44.4075 unplaced-scaffold na na JRPL02000082.1 = NZ_JRPL02000082.1 Primary Assembly 1520 na NODE_83_length_1486_cov_107.11 unplaced-scaffold na na JRPL02000083.1 = NZ_JRPL02000083.1 Primary Assembly 1486 na NODE_84_length_1399_cov_86.4254 unplaced-scaffold na na JRPL02000084.1 = NZ_JRPL02000084.1 Primary Assembly 1399 na NODE_85_length_1394_cov_146.718 unplaced-scaffold na na JRPL02000085.1 = NZ_JRPL02000085.1 Primary Assembly 1394 na NODE_86_length_1392_cov_91.9118 unplaced-scaffold na na JRPL02000086.1 = NZ_JRPL02000086.1 Primary Assembly 1392 na NODE_87_length_1315_cov_215.223 unplaced-scaffold na na JRPL02000087.1 = NZ_JRPL02000087.1 Primary Assembly 1315 na NODE_88_length_1229_cov_219.404 unplaced-scaffold na na JRPL02000088.1 = NZ_JRPL02000088.1 Primary Assembly 1229 na NODE_89_length_1145_cov_84.8107 unplaced-scaffold na na JRPL02000089.1 = NZ_JRPL02000089.1 Primary Assembly 1145 na NODE_93_length_1058_cov_31.8665 unplaced-scaffold na na JRPL02000090.1 = NZ_JRPL02000090.1 Primary Assembly 1058 na NODE_94_length_991_cov_51.9148 unplaced-scaffold na na JRPL02000091.1 = NZ_JRPL02000091.1 Primary Assembly 991 na NODE_95_length_989_cov_83.9292 unplaced-scaffold na na JRPL02000092.1 = NZ_JRPL02000092.1 Primary Assembly 989 na NODE_96_length_893_cov_90.3161 unplaced-scaffold na na JRPL02000093.1 = NZ_JRPL02000093.1 Primary Assembly 893 na NODE_97_length_888_cov_37.4651 unplaced-scaffold na na JRPL02000094.1 = NZ_JRPL02000094.1 Primary Assembly 888 na NODE_98_length_882_cov_37.7995 unplaced-scaffold na na JRPL02000095.1 = NZ_JRPL02000095.1 Primary Assembly 882 na NODE_99_length_874_cov_109.907 unplaced-scaffold na na JRPL02000096.1 = NZ_JRPL02000096.1 Primary Assembly 874 na NODE_100_length_839_cov_136.532 unplaced-scaffold na na JRPL02000097.1 = NZ_JRPL02000097.1 Primary Assembly 839 na NODE_101_length_789_cov_100.326 unplaced-scaffold na na JRPL02000098.1 = NZ_JRPL02000098.1 Primary Assembly 789 na NODE_102_length_769_cov_38.3015 unplaced-scaffold na na JRPL02000099.1 = NZ_JRPL02000099.1 Primary Assembly 769 na NODE_104_length_703_cov_104.538 unplaced-scaffold na na JRPL02000100.1 = NZ_JRPL02000100.1 Primary Assembly 703 na NODE_105_length_671_cov_44.3339 unplaced-scaffold na na JRPL02000101.1 = NZ_JRPL02000101.1 Primary Assembly 671 na NODE_107_length_642_cov_106.72 unplaced-scaffold na na JRPL02000102.1 = NZ_JRPL02000102.1 Primary Assembly 642 na NODE_109_length_621_cov_126.142 unplaced-scaffold na na JRPL02000103.1 = NZ_JRPL02000103.1 Primary Assembly 621 na NODE_110_length_609_cov_84.3863 unplaced-scaffold na na JRPL02000104.1 = NZ_JRPL02000104.1 Primary Assembly 609 na NODE_111_length_562_cov_42.743 unplaced-scaffold na na JRPL02000105.1 = NZ_JRPL02000105.1 Primary Assembly 562 na NODE_112_length_560_cov_91.5727 unplaced-scaffold na na JRPL02000106.1 = NZ_JRPL02000106.1 Primary Assembly 560 na NODE_113_length_542_cov_85.0226 unplaced-scaffold na na JRPL02000107.1 = NZ_JRPL02000107.1 Primary Assembly 542 na NODE_114_length_533_cov_117.039 unplaced-scaffold na na JRPL02000108.1 = NZ_JRPL02000108.1 Primary Assembly 533 na NODE_115_length_512_cov_118.109 unplaced-scaffold na na JRPL02000109.1 = NZ_JRPL02000109.1 Primary Assembly 512 na NODE_116_length_476_cov_115.599 unplaced-scaffold na na JRPL02000110.1 = NZ_JRPL02000110.1 Primary Assembly 476 na NODE_118_length_474_cov_220.208 unplaced-scaffold na na JRPL02000111.1 = NZ_JRPL02000111.1 Primary Assembly 474 na NODE_119_length_473_cov_69.0909 unplaced-scaffold na na JRPL02000112.1 = NZ_JRPL02000112.1 Primary Assembly 473 na NODE_124_length_470_cov_137.229 unplaced-scaffold na na JRPL02000113.1 = NZ_JRPL02000113.1 Primary Assembly 470 na NODE_127_length_466_cov_46.6104 unplaced-scaffold na na JRPL02000114.1 = NZ_JRPL02000114.1 Primary Assembly 466 na NODE_131_length_440_cov_180.431 unplaced-scaffold na na JRPL02000115.1 = NZ_JRPL02000115.1 Primary Assembly 440 na NODE_148_length_412_cov_66.0351 unplaced-scaffold na na JRPL02000116.1 = NZ_JRPL02000116.1 Primary Assembly 412 na NODE_150_length_409_cov_95.9742 unplaced-scaffold na na JRPL02000117.1 = NZ_JRPL02000117.1 Primary Assembly 409 na NODE_152_length_400_cov_36.9668 unplaced-scaffold na na JRPL02000118.1 = NZ_JRPL02000118.1 Primary Assembly 400 na NODE_187_length_340_cov_86.9004 unplaced-scaffold na na JRPL02000119.1 = NZ_JRPL02000119.1 Primary Assembly 340 na NODE_188_length_330_cov_107.944 unplaced-scaffold na na JRPL02000120.1 = NZ_JRPL02000120.1 Primary Assembly 330 na NODE_189_length_304_cov_44.0341 unplaced-scaffold na na JRPL02000121.1 = NZ_JRPL02000121.1 Primary Assembly 304 na