hub GCF_000858025.1 genome assembly shortLabel Reticuloendotheliosis virus (HA9901 2005) longLabel Reticuloendotheliosis virus (HA9901 2005)/Reticuloendotheliosis virus/GCF_000858025.1_ViralProj15145 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_000858025.1_ViralProj15145.description.html genome GCF_000858025.1 taxId 11636 groups groups.txt description Reticuloendotheliosis virus (HA9901 2005) twoBitPath GCF_000858025.1.2bit twoBitBptUrl GCF_000858025.1.2bit.bpt chromSizes GCF_000858025.1.chrom.sizes.txt chromAliasBb GCF_000858025.1.chromAlias.bb organism ViralProj15145 Apr. 2005 defaultPos NC_006934.1:2765-8295 scientificName Reticuloendotheliosis virus htmlPath html/GCF_000858025.1_ViralProj15145.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/858/025/GCF_000858025.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/858/025/GCF_000858025.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/858/025/GCF_000858025.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000858025.1_ViralProj15145.assembly.bb type bigBed 6 html html/GCF_000858025.1_ViralProj15145.assembly searchIndex name searchTrix ixIxx/GCF_000858025.1_ViralProj15145.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000858025.1_ViralProj15145.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_000858025.1_ViralProj15145.gc5Base.bw html html/GCF_000858025.1_ViralProj15145.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_000858025.1_ViralProj15145.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_000858025.1_ViralProj15145.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCF_000858025.1_ViralProj15145.rmsk.bb xrefDataUrl bbi/GCF_000858025.1_ViralProj15145.rmsk.align.bb maxWindowToDraw 5000000 html html/GCF_000858025.1_ViralProj15145.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000858025.1_ViralProj15145.simpleRepeat.bb html html/GCF_000858025.1_ViralProj15145.simpleRepeat track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_000858025.1_ViralProj15145.ncbiGene.bb type bigGenePred html html/GCF_000858025.1_ViralProj15145.ncbiGene searchIndex name searchTrix ixIxx/GCF_000858025.1_ViralProj15145.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene: labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCF_000858025.1_ViralProj15145.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_000858025.1_ViralProj15145.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_000858025.1_ViralProj15145.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_000858025.1_ViralProj15145.windowMasker.bb html html/GCF_000858025.1_ViralProj15145.windowMasker