hub GCF_000863945.3 genome assembly shortLabel human papillomavirus type 16 (1993) longLabel human papillomavirus type 16 (1993)/Human papillomavirus type 16/GCF_000863945.3_ViralProj15505 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_000863945.3_ViralProj15505.description.html genome GCF_000863945.3 taxId 333760 groups groups.txt description human papillomavirus type 16 (1993) twoBitPath GCF_000863945.3.2bit twoBitBptUrl GCF_000863945.3.2bit.bpt chromSizes GCF_000863945.3.chrom.sizes.txt chromAliasBb GCF_000863945.3.chromAlias.bb organism ViralProj15505 Jul. 2016 defaultPos NC_001526.4:2635-7906 scientificName Human papillomavirus type 16 htmlPath html/GCF_000863945.3_ViralProj15505.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/863/945/GCF_000863945.3 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/863/945/GCF_000863945.3 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/863/945/GCF_000863945.3 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000863945.3_ViralProj15505.assembly.bb type bigBed 6 html html/GCF_000863945.3_ViralProj15505.assembly searchIndex name searchTrix ixIxx/GCF_000863945.3_ViralProj15505.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000863945.3_ViralProj15505.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_000863945.3_ViralProj15505.gc5Base.bw html html/GCF_000863945.3_ViralProj15505.gc5Base track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCF_000863945.3_ViralProj15505.rmsk.bb xrefDataUrl bbi/GCF_000863945.3_ViralProj15505.rmsk.align.bb maxWindowToDraw 5000000 html html/GCF_000863945.3_ViralProj15505.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000863945.3_ViralProj15505.simpleRepeat.bb html html/GCF_000863945.3_ViralProj15505.simpleRepeat track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_000863945.3_ViralProj15505.ncbiGene.bb type bigGenePred html html/GCF_000863945.3_ViralProj15505.ncbiGene searchIndex name searchTrix ixIxx/GCF_000863945.3_ViralProj15505.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene: labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCF_000863945.3_ViralProj15505.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_000863945.3_ViralProj15505.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_000863945.3_ViralProj15505.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_000863945.3_ViralProj15505.windowMasker.bb html html/GCF_000863945.3_ViralProj15505.windowMasker