hub GCF_000866785.1 genome assembly shortLabel Saint Louis encephalitis virus (Kern217 2005) longLabel Saint Louis encephalitis virus (Kern217 2005)/Saint Louis encephalitis virus/GCF_000866785.1_ViralProj16150 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_000866785.1_ViralProj16150.description.html genome GCF_000866785.1 taxId 11080 groups groups.txt description Saint Louis encephalitis virus (Kern217 2005) twoBitPath GCF_000866785.1.2bit twoBitBptUrl GCF_000866785.1.2bit.bpt chromSizes GCF_000866785.1.chrom.sizes.txt chromAliasBb GCF_000866785.1.chromAlias.bb organism ViralProj16150 Jan. 2007 defaultPos NC_007580.2:3646-10940 scientificName Saint Louis encephalitis virus htmlPath html/GCF_000866785.1_ViralProj16150.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/866/785/GCF_000866785.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/866/785/GCF_000866785.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/866/785/GCF_000866785.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.assembly.bb type bigBed 6 html html/GCF_000866785.1_ViralProj16150.assembly searchIndex name url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database group map track gap longLabel AGP gap shortLabel Gap (AGP defined) visibility dense color 0,0,0 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.gap.bb type bigBed 4 group map html html/GCF_000866785.1_ViralProj16150.gap track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000866785.1_ViralProj16150.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.gc5Base.bw html html/GCF_000866785.1_ViralProj16150.gc5Base track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.ncbiGene.bb type bigGenePred html html/GCF_000866785.1_ViralProj16150.ncbiGene searchIndex name searchTrix ixIxx/GCF_000866785.1_ViralProj16150.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCF_000866785.1_ViralProj16150.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.windowMasker.bb html html/GCF_000866785.1_ViralProj16150.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCF_000866785.1_ViralProj16150.allGaps.bb html html/GCF_000866785.1_ViralProj16150.allGaps