# Assembly name: CpI1-S # Organism name: Frankia torreyi (high G+C Gram-positive bacteria) # Infraspecific name: strain=CpI1 # Taxid: 1856 # BioSample: SAMN02798190 # BioProject: PRJNA248409 # Submitter: University of New Hampshire # Date: 2015-03-05 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JYFN01 # Assembly method: AllPaths v. r41043 # Expected final version: yes # Genome coverage: 206.3x # Sequencing technology: Illumina HiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_000948395.1 # RefSeq assembly accession: GCF_000948395.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000948405.1 GCF_000948405.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name FF36_scaffold_0.1 unplaced-scaffold na na JYFN01000001.1 = NZ_JYFN01000001.1 Primary Assembly 282213 na FF36_scaffold_1.2 unplaced-scaffold na na JYFN01000002.1 = NZ_JYFN01000002.1 Primary Assembly 275815 na FF36_scaffold_2.3 unplaced-scaffold na na JYFN01000003.1 = NZ_JYFN01000003.1 Primary Assembly 260792 na FF36_scaffold_3.4 unplaced-scaffold na na JYFN01000004.1 = NZ_JYFN01000004.1 Primary Assembly 225038 na FF36_scaffold_4.5 unplaced-scaffold na na JYFN01000005.1 = NZ_JYFN01000005.1 Primary Assembly 224166 na FF36_scaffold_5.6 unplaced-scaffold na na JYFN01000006.1 = NZ_JYFN01000006.1 Primary Assembly 215390 na FF36_scaffold_6.7 unplaced-scaffold na na JYFN01000007.1 = NZ_JYFN01000007.1 Primary Assembly 215260 na FF36_scaffold_7.8 unplaced-scaffold na na JYFN01000008.1 = NZ_JYFN01000008.1 Primary Assembly 177713 na FF36_scaffold_8.9 unplaced-scaffold na na JYFN01000009.1 = NZ_JYFN01000009.1 Primary Assembly 172150 na FF36_scaffold_9.10 unplaced-scaffold na na JYFN01000010.1 = NZ_JYFN01000010.1 Primary Assembly 154642 na FF36_scaffold_10.11 unplaced-scaffold na na JYFN01000011.1 = NZ_JYFN01000011.1 Primary Assembly 150277 na FF36_scaffold_11.12 unplaced-scaffold na na JYFN01000012.1 = NZ_JYFN01000012.1 Primary Assembly 148503 na FF36_scaffold_12.13 unplaced-scaffold na na JYFN01000013.1 = NZ_JYFN01000013.1 Primary Assembly 145155 na FF36_scaffold_13.14 unplaced-scaffold na na JYFN01000014.1 = NZ_JYFN01000014.1 Primary Assembly 135770 na FF36_scaffold_14.15 unplaced-scaffold na na JYFN01000015.1 = NZ_JYFN01000015.1 Primary Assembly 131329 na FF36_scaffold_15.16 unplaced-scaffold na na JYFN01000016.1 = NZ_JYFN01000016.1 Primary Assembly 125980 na FF36_scaffold_16.17 unplaced-scaffold na na JYFN01000017.1 = NZ_JYFN01000017.1 Primary Assembly 119812 na FF36_scaffold_17.18 unplaced-scaffold na na JYFN01000018.1 = NZ_JYFN01000018.1 Primary Assembly 119065 na FF36_scaffold_18.19 unplaced-scaffold na na JYFN01000019.1 = NZ_JYFN01000019.1 Primary Assembly 117614 na FF36_scaffold_19.20 unplaced-scaffold na na JYFN01000020.1 = NZ_JYFN01000020.1 Primary Assembly 116334 na FF36_scaffold_20.21 unplaced-scaffold na na JYFN01000021.1 = NZ_JYFN01000021.1 Primary Assembly 108615 na FF36_scaffold_21.22 unplaced-scaffold na na JYFN01000022.1 = NZ_JYFN01000022.1 Primary Assembly 108361 na FF36_scaffold_22.23 unplaced-scaffold na na JYFN01000023.1 = NZ_JYFN01000023.1 Primary Assembly 107928 na FF36_scaffold_23.24 unplaced-scaffold na na JYFN01000024.1 = NZ_JYFN01000024.1 Primary Assembly 106898 na FF36_scaffold_24.25 unplaced-scaffold na na JYFN01000025.1 = NZ_JYFN01000025.1 Primary Assembly 103732 na FF36_scaffold_25.26 unplaced-scaffold na na JYFN01000026.1 = NZ_JYFN01000026.1 Primary Assembly 99123 na FF36_scaffold_26.27 unplaced-scaffold na na JYFN01000027.1 = NZ_JYFN01000027.1 Primary Assembly 96867 na FF36_scaffold_27.28 unplaced-scaffold na na JYFN01000028.1 = NZ_JYFN01000028.1 Primary Assembly 95809 na FF36_scaffold_28.29 unplaced-scaffold na na JYFN01000029.1 = NZ_JYFN01000029.1 Primary Assembly 92820 na FF36_scaffold_29.30 unplaced-scaffold na na JYFN01000030.1 = NZ_JYFN01000030.1 Primary Assembly 92221 na FF36_scaffold_30.31 unplaced-scaffold na na JYFN01000031.1 = NZ_JYFN01000031.1 Primary Assembly 88848 na FF36_scaffold_31.32 unplaced-scaffold na na JYFN01000032.1 = NZ_JYFN01000032.1 Primary Assembly 81764 na FF36_scaffold_32.33 unplaced-scaffold na na JYFN01000033.1 = NZ_JYFN01000033.1 Primary Assembly 79478 na FF36_scaffold_33.34 unplaced-scaffold na na JYFN01000034.1 = NZ_JYFN01000034.1 Primary Assembly 73714 na FF36_scaffold_34.35 unplaced-scaffold na na JYFN01000035.1 = NZ_JYFN01000035.1 Primary Assembly 72695 na FF36_scaffold_35.36 unplaced-scaffold na na JYFN01000036.1 = NZ_JYFN01000036.1 Primary Assembly 71934 na FF36_scaffold_36.37 unplaced-scaffold na na JYFN01000037.1 = NZ_JYFN01000037.1 Primary Assembly 70489 na FF36_scaffold_37.38 unplaced-scaffold na na JYFN01000038.1 = NZ_JYFN01000038.1 Primary Assembly 69658 na FF36_scaffold_38.39 unplaced-scaffold na na JYFN01000039.1 = NZ_JYFN01000039.1 Primary Assembly 67852 na FF36_scaffold_39.40 unplaced-scaffold na na JYFN01000040.1 = NZ_JYFN01000040.1 Primary Assembly 67298 na FF36_scaffold_40.41 unplaced-scaffold na na JYFN01000041.1 = NZ_JYFN01000041.1 Primary Assembly 60426 na FF36_scaffold_41.42 unplaced-scaffold na na JYFN01000042.1 = NZ_JYFN01000042.1 Primary Assembly 59326 na FF36_scaffold_42.43 unplaced-scaffold na na JYFN01000043.1 = NZ_JYFN01000043.1 Primary Assembly 58154 na FF36_scaffold_43.44 unplaced-scaffold na na JYFN01000044.1 = NZ_JYFN01000044.1 Primary Assembly 57973 na FF36_scaffold_44.45 unplaced-scaffold na na JYFN01000045.1 = NZ_JYFN01000045.1 Primary Assembly 57510 na FF36_scaffold_45.46 unplaced-scaffold na na JYFN01000046.1 = NZ_JYFN01000046.1 Primary Assembly 56332 na FF36_scaffold_46.47 unplaced-scaffold na na JYFN01000047.1 = NZ_JYFN01000047.1 Primary Assembly 54849 na FF36_scaffold_47.48 unplaced-scaffold na na JYFN01000048.1 = NZ_JYFN01000048.1 Primary Assembly 53839 na FF36_scaffold_48.49 unplaced-scaffold na na JYFN01000049.1 = NZ_JYFN01000049.1 Primary Assembly 53322 na FF36_scaffold_49.50 unplaced-scaffold na na JYFN01000050.1 = NZ_JYFN01000050.1 Primary Assembly 47902 na FF36_scaffold_50.51 unplaced-scaffold na na JYFN01000051.1 = NZ_JYFN01000051.1 Primary Assembly 47522 na FF36_scaffold_51.52 unplaced-scaffold na na JYFN01000052.1 = NZ_JYFN01000052.1 Primary Assembly 46800 na FF36_scaffold_52.53 unplaced-scaffold na na JYFN01000053.1 = NZ_JYFN01000053.1 Primary Assembly 46354 na FF36_scaffold_53.54 unplaced-scaffold na na JYFN01000054.1 = NZ_JYFN01000054.1 Primary Assembly 46331 na FF36_scaffold_54.55 unplaced-scaffold na na JYFN01000055.1 = NZ_JYFN01000055.1 Primary Assembly 46183 na FF36_scaffold_55.56 unplaced-scaffold na na JYFN01000056.1 = NZ_JYFN01000056.1 Primary Assembly 46133 na FF36_scaffold_56.57 unplaced-scaffold na na JYFN01000057.1 = NZ_JYFN01000057.1 Primary Assembly 45770 na FF36_scaffold_57.58 unplaced-scaffold na na JYFN01000058.1 = NZ_JYFN01000058.1 Primary Assembly 45144 na FF36_scaffold_58.59 unplaced-scaffold na na JYFN01000059.1 = NZ_JYFN01000059.1 Primary Assembly 45203 na FF36_scaffold_59.60 unplaced-scaffold na na JYFN01000060.1 = NZ_JYFN01000060.1 Primary Assembly 43314 na FF36_scaffold_60.61 unplaced-scaffold na na JYFN01000061.1 = NZ_JYFN01000061.1 Primary Assembly 41452 na FF36_scaffold_61.62 unplaced-scaffold na na JYFN01000062.1 = NZ_JYFN01000062.1 Primary Assembly 40742 na FF36_scaffold_62.63 unplaced-scaffold na na JYFN01000063.1 = NZ_JYFN01000063.1 Primary Assembly 38378 na FF36_scaffold_63.64 unplaced-scaffold na na JYFN01000064.1 = NZ_JYFN01000064.1 Primary Assembly 35371 na FF36_scaffold_64.65 unplaced-scaffold na na JYFN01000065.1 = NZ_JYFN01000065.1 Primary Assembly 35314 na FF36_scaffold_65.66 unplaced-scaffold na na JYFN01000066.1 = NZ_JYFN01000066.1 Primary Assembly 33737 na FF36_scaffold_66.67 unplaced-scaffold na na JYFN01000067.1 = NZ_JYFN01000067.1 Primary Assembly 32942 na FF36_scaffold_67.68 unplaced-scaffold na na JYFN01000068.1 = NZ_JYFN01000068.1 Primary Assembly 32935 na FF36_scaffold_68.69 unplaced-scaffold na na JYFN01000069.1 = NZ_JYFN01000069.1 Primary Assembly 32289 na FF36_scaffold_69.70 unplaced-scaffold na na JYFN01000070.1 = NZ_JYFN01000070.1 Primary Assembly 32130 na FF36_scaffold_70.71 unplaced-scaffold na na JYFN01000071.1 = NZ_JYFN01000071.1 Primary Assembly 30958 na FF36_scaffold_71.72 unplaced-scaffold na na JYFN01000072.1 = NZ_JYFN01000072.1 Primary Assembly 30886 na FF36_scaffold_72.73 unplaced-scaffold na na JYFN01000073.1 = NZ_JYFN01000073.1 Primary Assembly 30845 na FF36_scaffold_73.74 unplaced-scaffold na na JYFN01000074.1 = NZ_JYFN01000074.1 Primary Assembly 30869 na FF36_scaffold_74.75 unplaced-scaffold na na JYFN01000075.1 = NZ_JYFN01000075.1 Primary Assembly 29948 na FF36_scaffold_75.76 unplaced-scaffold na na JYFN01000076.1 = NZ_JYFN01000076.1 Primary Assembly 29856 na FF36_scaffold_76.77 unplaced-scaffold na na JYFN01000077.1 = NZ_JYFN01000077.1 Primary Assembly 28958 na FF36_scaffold_77.78 unplaced-scaffold na na JYFN01000078.1 = NZ_JYFN01000078.1 Primary Assembly 26888 na FF36_scaffold_78.79 unplaced-scaffold na na JYFN01000079.1 = NZ_JYFN01000079.1 Primary Assembly 26573 na FF36_scaffold_79.80 unplaced-scaffold na na JYFN01000080.1 = NZ_JYFN01000080.1 Primary Assembly 26531 na FF36_scaffold_80.81 unplaced-scaffold na na JYFN01000081.1 = NZ_JYFN01000081.1 Primary Assembly 25717 na FF36_scaffold_81.82 unplaced-scaffold na na JYFN01000082.1 = NZ_JYFN01000082.1 Primary Assembly 25269 na FF36_scaffold_82.83 unplaced-scaffold na na JYFN01000083.1 = NZ_JYFN01000083.1 Primary Assembly 24805 na FF36_scaffold_83.84 unplaced-scaffold na na JYFN01000084.1 = NZ_JYFN01000084.1 Primary Assembly 24776 na FF36_scaffold_84.85 unplaced-scaffold na na JYFN01000085.1 = NZ_JYFN01000085.1 Primary Assembly 24739 na FF36_scaffold_85.86 unplaced-scaffold na na JYFN01000086.1 = NZ_JYFN01000086.1 Primary Assembly 23030 na FF36_scaffold_86.87 unplaced-scaffold na na JYFN01000087.1 = NZ_JYFN01000087.1 Primary Assembly 23020 na FF36_scaffold_87.88 unplaced-scaffold na na JYFN01000088.1 = NZ_JYFN01000088.1 Primary Assembly 21983 na FF36_scaffold_88.89 unplaced-scaffold na na JYFN01000089.1 = NZ_JYFN01000089.1 Primary Assembly 21666 na FF36_scaffold_89.90 unplaced-scaffold na na JYFN01000090.1 = NZ_JYFN01000090.1 Primary Assembly 21371 na FF36_scaffold_90.91 unplaced-scaffold na na JYFN01000091.1 = NZ_JYFN01000091.1 Primary Assembly 20808 na FF36_scaffold_91.92 unplaced-scaffold na na JYFN01000092.1 = NZ_JYFN01000092.1 Primary Assembly 19867 na FF36_scaffold_92.93 unplaced-scaffold na na JYFN01000093.1 = NZ_JYFN01000093.1 Primary Assembly 19817 na FF36_scaffold_93.94 unplaced-scaffold na na JYFN01000094.1 = NZ_JYFN01000094.1 Primary Assembly 17145 na FF36_scaffold_94.95 unplaced-scaffold na na JYFN01000095.1 = NZ_JYFN01000095.1 Primary Assembly 16711 na FF36_scaffold_95.96 unplaced-scaffold na na JYFN01000096.1 = NZ_JYFN01000096.1 Primary Assembly 16407 na FF36_scaffold_96.97 unplaced-scaffold na na JYFN01000097.1 = NZ_JYFN01000097.1 Primary Assembly 16501 na FF36_scaffold_97.98 unplaced-scaffold na na JYFN01000098.1 = NZ_JYFN01000098.1 Primary Assembly 16341 na FF36_scaffold_98.99 unplaced-scaffold na na JYFN01000099.1 = NZ_JYFN01000099.1 Primary Assembly 15548 na FF36_scaffold_99.100 unplaced-scaffold na na JYFN01000100.1 = NZ_JYFN01000100.1 Primary Assembly 15611 na FF36_scaffold_100.101 unplaced-scaffold na na JYFN01000101.1 = NZ_JYFN01000101.1 Primary Assembly 13918 na FF36_scaffold_101.102 unplaced-scaffold na na JYFN01000102.1 = NZ_JYFN01000102.1 Primary Assembly 13472 na FF36_scaffold_102.103 unplaced-scaffold na na JYFN01000103.1 = NZ_JYFN01000103.1 Primary Assembly 13445 na FF36_scaffold_103.104 unplaced-scaffold na na JYFN01000104.1 = NZ_JYFN01000104.1 Primary Assembly 12847 na FF36_scaffold_104.105 unplaced-scaffold na na JYFN01000105.1 = NZ_JYFN01000105.1 Primary Assembly 12305 na FF36_scaffold_105.106 unplaced-scaffold na na JYFN01000106.1 = NZ_JYFN01000106.1 Primary Assembly 11990 na FF36_scaffold_106.107 unplaced-scaffold na na JYFN01000107.1 = NZ_JYFN01000107.1 Primary Assembly 11853 na FF36_scaffold_107.108 unplaced-scaffold na na JYFN01000108.1 = NZ_JYFN01000108.1 Primary Assembly 10320 na FF36_scaffold_108.109 unplaced-scaffold na na JYFN01000109.1 = NZ_JYFN01000109.1 Primary Assembly 9992 na FF36_scaffold_109.110 unplaced-scaffold na na JYFN01000110.1 = NZ_JYFN01000110.1 Primary Assembly 9832 na FF36_scaffold_110.111 unplaced-scaffold na na JYFN01000111.1 = NZ_JYFN01000111.1 Primary Assembly 9379 na FF36_scaffold_111.112 unplaced-scaffold na na JYFN01000112.1 = NZ_JYFN01000112.1 Primary Assembly 8550 na FF36_scaffold_112.113 unplaced-scaffold na na JYFN01000113.1 = NZ_JYFN01000113.1 Primary Assembly 8378 na FF36_scaffold_113.114 unplaced-scaffold na na JYFN01000114.1 = NZ_JYFN01000114.1 Primary Assembly 7722 na FF36_scaffold_114.115 unplaced-scaffold na na JYFN01000115.1 = NZ_JYFN01000115.1 Primary Assembly 7019 na FF36_scaffold_115.116 unplaced-scaffold na na JYFN01000116.1 = NZ_JYFN01000116.1 Primary Assembly 6591 na FF36_scaffold_116.117 unplaced-scaffold na na JYFN01000117.1 = NZ_JYFN01000117.1 Primary Assembly 6276 na FF36_scaffold_117.118 unplaced-scaffold na na JYFN01000118.1 = NZ_JYFN01000118.1 Primary Assembly 6028 na FF36_scaffold_118.119 unplaced-scaffold na na JYFN01000119.1 = NZ_JYFN01000119.1 Primary Assembly 6015 na FF36_scaffold_119.120 unplaced-scaffold na na JYFN01000120.1 = NZ_JYFN01000120.1 Primary Assembly 5989 na FF36_scaffold_120.121 unplaced-scaffold na na JYFN01000121.1 = NZ_JYFN01000121.1 Primary Assembly 5906 na FF36_scaffold_121.122 unplaced-scaffold na na JYFN01000122.1 = NZ_JYFN01000122.1 Primary Assembly 5477 na FF36_scaffold_122.123 unplaced-scaffold na na JYFN01000123.1 = NZ_JYFN01000123.1 Primary Assembly 5361 na FF36_scaffold_123.124 unplaced-scaffold na na JYFN01000124.1 = NZ_JYFN01000124.1 Primary Assembly 4780 na FF36_scaffold_124.125 unplaced-scaffold na na JYFN01000125.1 = NZ_JYFN01000125.1 Primary Assembly 4639 na FF36_scaffold_125.126 unplaced-scaffold na na JYFN01000126.1 = NZ_JYFN01000126.1 Primary Assembly 4516 na FF36_scaffold_126.127 unplaced-scaffold na na JYFN01000127.1 = NZ_JYFN01000127.1 Primary Assembly 4401 na FF36_scaffold_127.128 unplaced-scaffold na na JYFN01000128.1 = NZ_JYFN01000128.1 Primary Assembly 3981 na FF36_scaffold_128.129 unplaced-scaffold na na JYFN01000129.1 = NZ_JYFN01000129.1 Primary Assembly 3602 na FF36_scaffold_129.130 unplaced-scaffold na na JYFN01000130.1 = NZ_JYFN01000130.1 Primary Assembly 3453 na FF36_scaffold_130.131 unplaced-scaffold na na JYFN01000131.1 = NZ_JYFN01000131.1 Primary Assembly 2874 na FF36_scaffold_131.132 unplaced-scaffold na na JYFN01000132.1 = NZ_JYFN01000132.1 Primary Assembly 2777 na FF36_scaffold_132.133 unplaced-scaffold na na JYFN01000133.1 = NZ_JYFN01000133.1 Primary Assembly 2510 na FF36_scaffold_133.134 unplaced-scaffold na na JYFN01000134.1 = NZ_JYFN01000134.1 Primary Assembly 2317 na FF36_scaffold_134.135 unplaced-scaffold na na JYFN01000135.1 = NZ_JYFN01000135.1 Primary Assembly 2297 na FF36_scaffold_135.136 unplaced-scaffold na na JYFN01000136.1 = NZ_JYFN01000136.1 Primary Assembly 2224 na FF36_scaffold_136.137 unplaced-scaffold na na JYFN01000137.1 = NZ_JYFN01000137.1 Primary Assembly 2164 na FF36_scaffold_137.138 unplaced-scaffold na na JYFN01000138.1 = NZ_JYFN01000138.1 Primary Assembly 2067 na FF36_scaffold_138.139 unplaced-scaffold na na JYFN01000139.1 = NZ_JYFN01000139.1 Primary Assembly 1946 na FF36_scaffold_139.140 unplaced-scaffold na na JYFN01000140.1 = NZ_JYFN01000140.1 Primary Assembly 1876 na FF36_scaffold_140.141 unplaced-scaffold na na JYFN01000141.1 = NZ_JYFN01000141.1 Primary Assembly 1750 na FF36_scaffold_141.142 unplaced-scaffold na na JYFN01000142.1 = NZ_JYFN01000142.1 Primary Assembly 1743 na FF36_scaffold_142.143 unplaced-scaffold na na JYFN01000143.1 = NZ_JYFN01000143.1 Primary Assembly 1673 na FF36_scaffold_143.144 unplaced-scaffold na na JYFN01000144.1 = NZ_JYFN01000144.1 Primary Assembly 1477 na FF36_scaffold_144.145 unplaced-scaffold na na JYFN01000145.1 = NZ_JYFN01000145.1 Primary Assembly 1453 na FF36_scaffold_145.146 unplaced-scaffold na na JYFN01000146.1 = NZ_JYFN01000146.1 Primary Assembly 1369 na FF36_scaffold_146.147 unplaced-scaffold na na JYFN01000147.1 = NZ_JYFN01000147.1 Primary Assembly 1284 na FF36_scaffold_147.148 unplaced-scaffold na na JYFN01000148.1 = NZ_JYFN01000148.1 Primary Assembly 1261 na FF36_scaffold_148.149 unplaced-scaffold na na JYFN01000149.1 = NZ_JYFN01000149.1 Primary Assembly 1167 na FF36_scaffold_149.150 unplaced-scaffold na na JYFN01000150.1 = NZ_JYFN01000150.1 Primary Assembly 1073 na FF36_scaffold_150.151 unplaced-scaffold na na JYFN01000151.1 = NZ_JYFN01000151.1 Primary Assembly 1056 na FF36_scaffold_151.152 unplaced-scaffold na na JYFN01000152.1 = NZ_JYFN01000152.1 Primary Assembly 1089 na FF36_scaffold_152.153 unplaced-scaffold na na JYFN01000153.1 = NZ_JYFN01000153.1 Primary Assembly 1031 na