# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.F.A.2.5 # Taxid: 2209 # BioSample: SAMN02708945 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPF01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.2x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000978935.1 # RefSeq assembly accession: GCF_000978935.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000978975.1 GCF_000978975.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold58_1_size23640-refined unplaced-scaffold na na JJPF01000001.1 = NZ_JJPF01000001.1 Primary Assembly 23640 na scaffold1_1_size132576-refined unplaced-scaffold na na JJPF01000002.1 = NZ_JJPF01000002.1 Primary Assembly 132119 na scaffold13_1_size81491-refined unplaced-scaffold na na JJPF01000003.1 = NZ_JJPF01000003.1 Primary Assembly 81078 na scaffold135_1_size1810-refined unplaced-scaffold na na JJPF01000004.1 = NZ_JJPF01000004.1 Primary Assembly 1714 na scaffold131_1_size2353-refined unplaced-scaffold na na JJPF01000005.1 = NZ_JJPF01000005.1 Primary Assembly 2353 na scaffold108_1_size6645-refined unplaced-scaffold na na JJPF01000006.1 = NZ_JJPF01000006.1 Primary Assembly 6645 na scaffold127_1_size2655-refined unplaced-scaffold na na JJPF01000007.1 = NZ_JJPF01000007.1 Primary Assembly 2655 na scaffold24_1_size46551-refined unplaced-scaffold na na JJPF01000008.1 = NZ_JJPF01000008.1 Primary Assembly 46460 na scaffold125_1_size3229-refined unplaced-scaffold na na JJPF01000009.1 = NZ_JJPF01000009.1 Primary Assembly 3229 na scaffold50_1_size28092-refined unplaced-scaffold na na JJPF01000010.1 = NZ_JJPF01000010.1 Primary Assembly 28092 na scaffold73_1_size16763-refined unplaced-scaffold na na JJPF01000011.1 = NZ_JJPF01000011.1 Primary Assembly 16763 na scaffold68_1_size19783-refined unplaced-scaffold na na JJPF01000012.1 = NZ_JJPF01000012.1 Primary Assembly 19783 na scaffold123_1_size3603-refined unplaced-scaffold na na JJPF01000013.1 = NZ_JJPF01000013.1 Primary Assembly 3603 na scaffold64_1_size21919-refined unplaced-scaffold na na JJPF01000014.1 = NZ_JJPF01000014.1 Primary Assembly 21919 na scaffold86_1_size11930-refined unplaced-scaffold na na JJPF01000015.1 = NZ_JJPF01000015.1 Primary Assembly 11930 na scaffold146_1_size526-refined unplaced-scaffold na na JJPF01000016.1 = NZ_JJPF01000016.1 Primary Assembly 526 na scaffold49_1_size40894-refined unplaced-scaffold na na JJPF01000017.1 = NZ_JJPF01000017.1 Primary Assembly 40894 na scaffold10_1_size77074-refined unplaced-scaffold na na JJPF01000018.1 = NZ_JJPF01000018.1 Primary Assembly 77074 na scaffold43_1_size46722-refined unplaced-scaffold na na JJPF01000019.1 = NZ_JJPF01000019.1 Primary Assembly 46402 na scaffold5_1_size159754-refined unplaced-scaffold na na JJPF01000020.1 = NZ_JJPF01000020.1 Primary Assembly 159024 na scaffold27_1_size44125-refined unplaced-scaffold na na JJPF01000021.1 = NZ_JJPF01000021.1 Primary Assembly 44125 na scaffold14_1_size62052-refined unplaced-scaffold na na JJPF01000022.1 = NZ_JJPF01000022.1 Primary Assembly 61662 na scaffold51_1_size27821-refined unplaced-scaffold na na JJPF01000023.1 = NZ_JJPF01000023.1 Primary Assembly 27821 na scaffold2_1_size105549-refined unplaced-scaffold na na JJPF01000024.1 = NZ_JJPF01000024.1 Primary Assembly 105450 na scaffold126_1_size2937-refined unplaced-scaffold na na JJPF01000025.1 = NZ_JJPF01000025.1 Primary Assembly 2937 na scaffold26_1_size44281-refined unplaced-scaffold na na JJPF01000026.1 = NZ_JJPF01000026.1 Primary Assembly 44098 na scaffold75_1_size29806-refined unplaced-scaffold na na JJPF01000027.1 = NZ_JJPF01000027.1 Primary Assembly 29777 na scaffold70_1_size18437-refined unplaced-scaffold na na JJPF01000028.1 = NZ_JJPF01000028.1 Primary Assembly 18437 na scaffold28_1_size44120-refined unplaced-scaffold na na JJPF01000029.1 = NZ_JJPF01000029.1 Primary Assembly 44098 na scaffold144_1_size701-refined unplaced-scaffold na na JJPF01000030.1 = NZ_JJPF01000030.1 Primary Assembly 701 na scaffold79_1_size14187-refined unplaced-scaffold na na JJPF01000031.1 = NZ_JJPF01000031.1 Primary Assembly 14187 na scaffold23_1_size94288-refined unplaced-scaffold na na JJPF01000032.1 = NZ_JJPF01000032.1 Primary Assembly 93993 na scaffold103_1_size7391-refined unplaced-scaffold na na JJPF01000033.1 = NZ_JJPF01000033.1 Primary Assembly 7391 na scaffold124_1_size3359-refined unplaced-scaffold na na JJPF01000034.1 = NZ_JJPF01000034.1 Primary Assembly 3359 na scaffold145_1_size575-refined unplaced-scaffold na na JJPF01000035.1 = NZ_JJPF01000035.1 Primary Assembly 575 na scaffold129_1_size2376-refined unplaced-scaffold na na JJPF01000036.1 = NZ_JJPF01000036.1 Primary Assembly 2376 na scaffold101_1_size7571-refined unplaced-scaffold na na JJPF01000037.1 = NZ_JJPF01000037.1 Primary Assembly 7571 na scaffold78_1_size14467-refined unplaced-scaffold na na JJPF01000038.1 = NZ_JJPF01000038.1 Primary Assembly 14467 na scaffold115_1_size5376-refined unplaced-scaffold na na JJPF01000039.1 = NZ_JJPF01000039.1 Primary Assembly 5376 na scaffold132_1_size2092-refined unplaced-scaffold na na JJPF01000040.1 = NZ_JJPF01000040.1 Primary Assembly 2092 na scaffold137_1_size1350-refined unplaced-scaffold na na JJPF01000041.1 = NZ_JJPF01000041.1 Primary Assembly 1350 na scaffold83_1_size23988-refined unplaced-scaffold na na JJPF01000042.1 = NZ_JJPF01000042.1 Primary Assembly 23988 na scaffold120_1_size3969-refined unplaced-scaffold na na JJPF01000043.1 = NZ_JJPF01000043.1 Primary Assembly 3969 na scaffold40_1_size35256-refined unplaced-scaffold na na JJPF01000044.1 = NZ_JJPF01000044.1 Primary Assembly 35256 na scaffold37_1_size36933-refined unplaced-scaffold na na JJPF01000045.1 = NZ_JJPF01000045.1 Primary Assembly 36918 na scaffold72_1_size18010-refined unplaced-scaffold na na JJPF01000046.1 = NZ_JJPF01000046.1 Primary Assembly 18010 na scaffold59_1_size23332-refined unplaced-scaffold na na JJPF01000047.1 = NZ_JJPF01000047.1 Primary Assembly 23240 na scaffold98_1_size8648-refined unplaced-scaffold na na JJPF01000048.1 = NZ_JJPF01000048.1 Primary Assembly 8648 na scaffold56_1_size24229-refined unplaced-scaffold na na JJPF01000049.1 = NZ_JJPF01000049.1 Primary Assembly 24029 na scaffold92_1_size9603-refined unplaced-scaffold na na JJPF01000050.1 = NZ_JJPF01000050.1 Primary Assembly 9603 na scaffold134_1_size1871-refined unplaced-scaffold na na JJPF01000051.1 = NZ_JJPF01000051.1 Primary Assembly 1871 na scaffold29_1_size43836-refined unplaced-scaffold na na JJPF01000052.1 = NZ_JJPF01000052.1 Primary Assembly 43818 na scaffold65_1_size21851-refined unplaced-scaffold na na JJPF01000053.1 = NZ_JJPF01000053.1 Primary Assembly 21772 na scaffold141_1_size1084-refined unplaced-scaffold na na JJPF01000054.1 = NZ_JJPF01000054.1 Primary Assembly 1084 na scaffold19_1_size52923-refined unplaced-scaffold na na JJPF01000055.1 = NZ_JJPF01000055.1 Primary Assembly 52823 na scaffold106_1_size6879-refined unplaced-scaffold na na JJPF01000056.1 = NZ_JJPF01000056.1 Primary Assembly 6796 na scaffold53_1_size32224-refined unplaced-scaffold na na JJPF01000057.1 = NZ_JJPF01000057.1 Primary Assembly 31866 na scaffold39_1_size35870-refined unplaced-scaffold na na JJPF01000058.1 = NZ_JJPF01000058.1 Primary Assembly 35870 na scaffold110_1_size6375-refined unplaced-scaffold na na JJPF01000059.1 = NZ_JJPF01000059.1 Primary Assembly 6375 na scaffold52_1_size27375-refined unplaced-scaffold na na JJPF01000060.1 = NZ_JJPF01000060.1 Primary Assembly 27375 na scaffold94_1_size9284-refined unplaced-scaffold na na JJPF01000061.1 = NZ_JJPF01000061.1 Primary Assembly 9284 na scaffold63_1_size22111-refined unplaced-scaffold na na JJPF01000062.1 = NZ_JJPF01000062.1 Primary Assembly 22111 na scaffold47_1_size29753-refined unplaced-scaffold na na JJPF01000063.1 = NZ_JJPF01000063.1 Primary Assembly 29753 na scaffold111_1_size6018-refined unplaced-scaffold na na JJPF01000064.1 = NZ_JJPF01000064.1 Primary Assembly 5905 na scaffold9_1_size77545-refined unplaced-scaffold na na JJPF01000065.1 = NZ_JJPF01000065.1 Primary Assembly 77445 na scaffold77_1_size14866-refined unplaced-scaffold na na JJPF01000066.1 = NZ_JJPF01000066.1 Primary Assembly 14866 na scaffold32_1_size40667-refined unplaced-scaffold na na JJPF01000067.1 = NZ_JJPF01000067.1 Primary Assembly 40667 na scaffold113_1_size10124-refined unplaced-scaffold na na JJPF01000068.1 = NZ_JJPF01000068.1 Primary Assembly 5808 na scaffold71_1_size18075-refined unplaced-scaffold na na JJPF01000069.1 = NZ_JJPF01000069.1 Primary Assembly 18075 na scaffold31_1_size41929-refined unplaced-scaffold na na JJPF01000070.1 = NZ_JJPF01000070.1 Primary Assembly 41929 na scaffold20_1_size52686-refined unplaced-scaffold na na JJPF01000071.1 = NZ_JJPF01000071.1 Primary Assembly 52446 na scaffold30_1_size113572-refined unplaced-scaffold na na JJPF01000072.1 = NZ_JJPF01000072.1 Primary Assembly 113464 na scaffold139_1_size1096-refined unplaced-scaffold na na JJPF01000073.1 = NZ_JJPF01000073.1 Primary Assembly 1096 na scaffold69_1_size21845-refined unplaced-scaffold na na JJPF01000074.1 = NZ_JJPF01000074.1 Primary Assembly 21845 na scaffold89_1_size10316-refined unplaced-scaffold na na JJPF01000075.1 = NZ_JJPF01000075.1 Primary Assembly 10316 na scaffold102_1_size13109-refined unplaced-scaffold na na JJPF01000076.1 = NZ_JJPF01000076.1 Primary Assembly 13109 na scaffold12_1_size69757-refined unplaced-scaffold na na JJPF01000077.1 = NZ_JJPF01000077.1 Primary Assembly 69677 na scaffold91_1_size10211-refined unplaced-scaffold na na JJPF01000078.1 = NZ_JJPF01000078.1 Primary Assembly 10211 na scaffold57_1_size23673-refined unplaced-scaffold na na JJPF01000079.1 = NZ_JJPF01000079.1 Primary Assembly 23589 na scaffold8_1_size81277-refined unplaced-scaffold na na JJPF01000080.1 = NZ_JJPF01000080.1 Primary Assembly 81079 na scaffold62_1_size36094-refined unplaced-scaffold na na JJPF01000081.1 = NZ_JJPF01000081.1 Primary Assembly 36173 na scaffold121_1_size7704-refined unplaced-scaffold na na JJPF01000082.1 = NZ_JJPF01000082.1 Primary Assembly 4094 na scaffold4_1_size96002-refined unplaced-scaffold na na JJPF01000083.1 = NZ_JJPF01000083.1 Primary Assembly 95677 na scaffold112_1_size5969-refined unplaced-scaffold na na JJPF01000084.1 = NZ_JJPF01000084.1 Primary Assembly 5969 na scaffold6_1_size81120-refined unplaced-scaffold na na JJPF01000085.1 = NZ_JJPF01000085.1 Primary Assembly 72571 na scaffold130_1_size2370-refined unplaced-scaffold na na JJPF01000086.1 = NZ_JJPF01000086.1 Primary Assembly 2370 na scaffold114_1_size5656-refined unplaced-scaffold na na JJPF01000087.1 = NZ_JJPF01000087.1 Primary Assembly 5656 na scaffold66_1_size21632-refined unplaced-scaffold na na JJPF01000088.1 = NZ_JJPF01000088.1 Primary Assembly 21632 na scaffold119_1_size4315-refined unplaced-scaffold na na JJPF01000089.1 = NZ_JJPF01000089.1 Primary Assembly 4315 na scaffold34_1_size40032-refined unplaced-scaffold na na JJPF01000090.1 = NZ_JJPF01000090.1 Primary Assembly 40032 na scaffold116_1_size5050-refined unplaced-scaffold na na JJPF01000091.1 = NZ_JJPF01000091.1 Primary Assembly 4952 na scaffold36_1_size37826-refined unplaced-scaffold na na JJPF01000092.1 = NZ_JJPF01000092.1 Primary Assembly 37180 na scaffold81_1_size12880-refined unplaced-scaffold na na JJPF01000093.1 = NZ_JJPF01000093.1 Primary Assembly 12880 na scaffold88_1_size11354-refined unplaced-scaffold na na JJPF01000094.1 = NZ_JJPF01000094.1 Primary Assembly 11354 na scaffold76_1_size15475-refined unplaced-scaffold na na JJPF01000095.1 = NZ_JJPF01000095.1 Primary Assembly 15386 na scaffold25_1_size45601-refined unplaced-scaffold na na JJPF01000096.1 = NZ_JJPF01000096.1 Primary Assembly 45601 na scaffold38_1_size36107-refined unplaced-scaffold na na JJPF01000097.1 = NZ_JJPF01000097.1 Primary Assembly 36071 na scaffold85_1_size11974-refined unplaced-scaffold na na JJPF01000098.1 = NZ_JJPF01000098.1 Primary Assembly 11974 na scaffold95_1_size9260-refined unplaced-scaffold na na JJPF01000099.1 = NZ_JJPF01000099.1 Primary Assembly 9260 na scaffold143_1_size844-refined unplaced-scaffold na na JJPF01000100.1 = NZ_JJPF01000100.1 Primary Assembly 844 na scaffold138_1_size1314-refined unplaced-scaffold na na JJPF01000101.1 = NZ_JJPF01000101.1 Primary Assembly 1314 na scaffold90_1_size18653-refined unplaced-scaffold na na JJPF01000102.1 = NZ_JJPF01000102.1 Primary Assembly 18425 na scaffold142_1_size981-refined unplaced-scaffold na na JJPF01000103.1 = NZ_JJPF01000103.1 Primary Assembly 981 na scaffold54_1_size25817-refined unplaced-scaffold na na JJPF01000104.1 = NZ_JJPF01000104.1 Primary Assembly 25817 na scaffold67_1_size21197-refined unplaced-scaffold na na JJPF01000105.1 = NZ_JJPF01000105.1 Primary Assembly 21197 na scaffold133_1_size1938-refined unplaced-scaffold na na JJPF01000106.1 = NZ_JJPF01000106.1 Primary Assembly 1938 na scaffold42_1_size33348-refined unplaced-scaffold na na JJPF01000107.1 = NZ_JJPF01000107.1 Primary Assembly 33248 na scaffold17_1_size85507-refined unplaced-scaffold na na JJPF01000108.1 = NZ_JJPF01000108.1 Primary Assembly 85108 na scaffold122_1_size3621-refined unplaced-scaffold na na JJPF01000109.1 = NZ_JJPF01000109.1 Primary Assembly 3621 na scaffold96_1_size9092-refined unplaced-scaffold na na JJPF01000110.1 = NZ_JJPF01000110.1 Primary Assembly 9092 na scaffold15_1_size59795-refined unplaced-scaffold na na JJPF01000111.1 = NZ_JJPF01000111.1 Primary Assembly 59697 na scaffold109_1_size6629-refined unplaced-scaffold na na JJPF01000112.1 = NZ_JJPF01000112.1 Primary Assembly 6629 na scaffold140_1_size1088-refined unplaced-scaffold na na JJPF01000113.1 = NZ_JJPF01000113.1 Primary Assembly 1049 na scaffold87_1_size11911-refined unplaced-scaffold na na JJPF01000114.1 = NZ_JJPF01000114.1 Primary Assembly 11911 na scaffold48_1_size29650-refined unplaced-scaffold na na JJPF01000115.1 = NZ_JJPF01000115.1 Primary Assembly 29550 na scaffold117_1_size4801-refined unplaced-scaffold na na JJPF01000116.1 = NZ_JJPF01000116.1 Primary Assembly 4761 na scaffold21_1_size52128-refined unplaced-scaffold na na JJPF01000117.1 = NZ_JJPF01000117.1 Primary Assembly 51428 na scaffold33_1_size40041-refined unplaced-scaffold na na JJPF01000118.1 = NZ_JJPF01000118.1 Primary Assembly 39941 na scaffold35_1_size37867-refined unplaced-scaffold na na JJPF01000119.1 = NZ_JJPF01000119.1 Primary Assembly 37867 na scaffold80_1_size13397-refined unplaced-scaffold na na JJPF01000120.1 = NZ_JJPF01000120.1 Primary Assembly 13373 na scaffold16_1_size56689-refined unplaced-scaffold na na JJPF01000121.1 = NZ_JJPF01000121.1 Primary Assembly 56551 na scaffold41_1_size33996-refined unplaced-scaffold na na JJPF01000122.1 = NZ_JJPF01000122.1 Primary Assembly 33878 na scaffold128_1_size2598-refined unplaced-scaffold na na JJPF01000123.1 = NZ_JJPF01000123.1 Primary Assembly 2598 na scaffold105_1_size6926-refined unplaced-scaffold na na JJPF01000124.1 = NZ_JJPF01000124.1 Primary Assembly 6926 na scaffold99_1_size8233-refined unplaced-scaffold na na JJPF01000125.1 = NZ_JJPF01000125.1 Primary Assembly 8133 na scaffold136_1_size1566-refined unplaced-scaffold na na JJPF01000126.1 = NZ_JJPF01000126.1 Primary Assembly 1566 na scaffold55_1_size24257-refined unplaced-scaffold na na JJPF01000127.1 = NZ_JJPF01000127.1 Primary Assembly 24257 na scaffold97_1_size11701-refined unplaced-scaffold na na JJPF01000128.1 = NZ_JJPF01000128.1 Primary Assembly 11778 na scaffold22_1_size51755-refined unplaced-scaffold na na JJPF01000129.1 = NZ_JJPF01000129.1 Primary Assembly 51755 na scaffold45_1_size30211-refined unplaced-scaffold na na JJPF01000130.1 = NZ_JJPF01000130.1 Primary Assembly 30211 na scaffold100_1_size7633-refined unplaced-scaffold na na JJPF01000131.1 = NZ_JJPF01000131.1 Primary Assembly 7633 na scaffold44_1_size32527-refined unplaced-scaffold na na JJPF01000132.1 = NZ_JJPF01000132.1 Primary Assembly 32527 na scaffold60_1_size22856-refined unplaced-scaffold na na JJPF01000133.1 = NZ_JJPF01000133.1 Primary Assembly 22757 na scaffold7_1_size81054-refined unplaced-scaffold na na JJPF01000134.1 = NZ_JJPF01000134.1 Primary Assembly 81054 na scaffold107_1_size6736-refined unplaced-scaffold na na JJPF01000135.1 = NZ_JJPF01000135.1 Primary Assembly 6736 na scaffold74_1_size16521-refined unplaced-scaffold na na JJPF01000136.1 = NZ_JJPF01000136.1 Primary Assembly 16421 na scaffold61_1_size22468-refined unplaced-scaffold na na JJPF01000137.1 = NZ_JJPF01000137.1 Primary Assembly 22468 na scaffold104_1_size7362-refined unplaced-scaffold na na JJPF01000138.1 = NZ_JJPF01000138.1 Primary Assembly 7362 na scaffold11_1_size151849-refined unplaced-scaffold na na JJPF01000139.1 = NZ_JJPF01000139.1 Primary Assembly 151407 na scaffold118_1_size4593-refined unplaced-scaffold na na JJPF01000140.1 = NZ_JJPF01000140.1 Primary Assembly 4496 na scaffold3_1_size104823-refined unplaced-scaffold na na JJPF01000141.1 = NZ_JJPF01000141.1 Primary Assembly 104624 na scaffold82_1_size12764-refined unplaced-scaffold na na JJPF01000142.1 = NZ_JJPF01000142.1 Primary Assembly 12764 na scaffold93_1_size9444-refined unplaced-scaffold na na JJPF01000143.1 = NZ_JJPF01000143.1 Primary Assembly 9444 na scaffold84_1_size12174-refined unplaced-scaffold na na JJPF01000144.1 = NZ_JJPF01000144.1 Primary Assembly 12174 na scaffold46_1_size30109-refined unplaced-scaffold na na JJPF01000145.1 = NZ_JJPF01000145.1 Primary Assembly 30109 na scaffold18_1_size53900-refined unplaced-scaffold na na JJPF01000146.1 = NZ_JJPF01000146.1 Primary Assembly 53900 na