# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=1.H.M.1A.2 # Taxid: 2209 # BioSample: SAMN02708938 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJQS01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.1x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979255.1 # RefSeq assembly accession: GCF_000979255.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979285.1 GCF_000979285.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold31_1_size41600-refined unplaced-scaffold na na JJQS01000001.1 = NZ_JJQS01000001.1 Primary Assembly 41600 na scaffold93_1_size11931-refined unplaced-scaffold na na JJQS01000002.1 = NZ_JJQS01000002.1 Primary Assembly 11931 na scaffold77_1_size17641-refined unplaced-scaffold na na JJQS01000003.1 = NZ_JJQS01000003.1 Primary Assembly 17545 na scaffold65_1_size21754-refined unplaced-scaffold na na JJQS01000004.1 = NZ_JJQS01000004.1 Primary Assembly 21656 na scaffold4_1_size87407-refined unplaced-scaffold na na JJQS01000005.1 = NZ_JJQS01000005.1 Primary Assembly 87185 na scaffold25_1_size94043-refined unplaced-scaffold na na JJQS01000006.1 = NZ_JJQS01000006.1 Primary Assembly 93880 na scaffold119_1_size3687-refined unplaced-scaffold na na JJQS01000007.1 = NZ_JJQS01000007.1 Primary Assembly 3687 na scaffold58_1_size23309-refined unplaced-scaffold na na JJQS01000008.1 = NZ_JJQS01000008.1 Primary Assembly 23309 na scaffold131_1_size2353-refined unplaced-scaffold na na JJQS01000009.1 = NZ_JJQS01000009.1 Primary Assembly 2353 na scaffold9_1_size76892-refined unplaced-scaffold na na JJQS01000010.1 = NZ_JJQS01000010.1 Primary Assembly 76752 na scaffold110_1_size5623-refined unplaced-scaffold na na JJQS01000011.1 = NZ_JJQS01000011.1 Primary Assembly 5623 na scaffold53_1_size25983-refined unplaced-scaffold na na JJQS01000012.1 = NZ_JJQS01000012.1 Primary Assembly 25983 na scaffold103_1_size13423-refined unplaced-scaffold na na JJQS01000013.1 = NZ_JJQS01000013.1 Primary Assembly 13359 na scaffold90_1_size12543-refined unplaced-scaffold na na JJQS01000014.1 = NZ_JJQS01000014.1 Primary Assembly 12543 na scaffold1_1_size124919-refined unplaced-scaffold na na JJQS01000015.1 = NZ_JJQS01000015.1 Primary Assembly 124625 na scaffold96_1_size8824-refined unplaced-scaffold na na JJQS01000016.1 = NZ_JJQS01000016.1 Primary Assembly 8824 na scaffold51_1_size26608-refined unplaced-scaffold na na JJQS01000017.1 = NZ_JJQS01000017.1 Primary Assembly 26608 na scaffold75_1_size17980-refined unplaced-scaffold na na JJQS01000018.1 = NZ_JJQS01000018.1 Primary Assembly 17980 na scaffold35_1_size37045-refined unplaced-scaffold na na JJQS01000019.1 = NZ_JJQS01000019.1 Primary Assembly 37045 na scaffold104_1_size6987-refined unplaced-scaffold na na JJQS01000020.1 = NZ_JJQS01000020.1 Primary Assembly 6987 na scaffold126_1_size2738-refined unplaced-scaffold na na JJQS01000021.1 = NZ_JJQS01000021.1 Primary Assembly 2738 na scaffold135_1_size2088-refined unplaced-scaffold na na JJQS01000022.1 = NZ_JJQS01000022.1 Primary Assembly 2088 na scaffold40_1_size33866-refined unplaced-scaffold na na JJQS01000023.1 = NZ_JJQS01000023.1 Primary Assembly 33866 na scaffold37_1_size35994-refined unplaced-scaffold na na JJQS01000024.1 = NZ_JJQS01000024.1 Primary Assembly 35994 na scaffold11_1_size62154-refined unplaced-scaffold na na JJQS01000025.1 = NZ_JJQS01000025.1 Primary Assembly 61983 na scaffold21_1_size53540-refined unplaced-scaffold na na JJQS01000026.1 = NZ_JJQS01000026.1 Primary Assembly 53423 na scaffold7_1_size81596-refined unplaced-scaffold na na JJQS01000027.1 = NZ_JJQS01000027.1 Primary Assembly 81596 na scaffold132_1_size2252-refined unplaced-scaffold na na JJQS01000028.1 = NZ_JJQS01000028.1 Primary Assembly 2252 na scaffold122_1_size3510-refined unplaced-scaffold na na JJQS01000029.1 = NZ_JJQS01000029.1 Primary Assembly 3510 na scaffold125_1_size2776-refined unplaced-scaffold na na JJQS01000030.1 = NZ_JJQS01000030.1 Primary Assembly 2756 na scaffold147_1_size833-refined unplaced-scaffold na na JJQS01000031.1 = NZ_JJQS01000031.1 Primary Assembly 833 na scaffold80_1_size16500-refined unplaced-scaffold na na JJQS01000032.1 = NZ_JJQS01000032.1 Primary Assembly 16500 na scaffold115_1_size4040-refined unplaced-scaffold na na JJQS01000033.1 = NZ_JJQS01000033.1 Primary Assembly 3760 na scaffold70_1_size20987-refined unplaced-scaffold na na JJQS01000034.1 = NZ_JJQS01000034.1 Primary Assembly 20987 na scaffold59_1_size23161-refined unplaced-scaffold na na JJQS01000035.1 = NZ_JJQS01000035.1 Primary Assembly 23143 na scaffold27_1_size44818-refined unplaced-scaffold na na JJQS01000036.1 = NZ_JJQS01000036.1 Primary Assembly 44818 na scaffold127_1_size2738-refined unplaced-scaffold na na JJQS01000037.1 = NZ_JJQS01000037.1 Primary Assembly 2738 na scaffold116_1_size3951-refined unplaced-scaffold na na JJQS01000038.1 = NZ_JJQS01000038.1 Primary Assembly 3951 na scaffold17_1_size53637-refined unplaced-scaffold na na JJQS01000039.1 = NZ_JJQS01000039.1 Primary Assembly 53438 na scaffold84_1_size15366-refined unplaced-scaffold na na JJQS01000040.1 = NZ_JJQS01000040.1 Primary Assembly 15366 na scaffold88_1_size13468-refined unplaced-scaffold na na JJQS01000041.1 = NZ_JJQS01000041.1 Primary Assembly 13468 na scaffold69_1_size21062-refined unplaced-scaffold na na JJQS01000042.1 = NZ_JJQS01000042.1 Primary Assembly 20957 na scaffold114_1_size4751-refined unplaced-scaffold na na JJQS01000043.1 = NZ_JJQS01000043.1 Primary Assembly 4751 na scaffold79_1_size16854-refined unplaced-scaffold na na JJQS01000044.1 = NZ_JJQS01000044.1 Primary Assembly 16854 na scaffold30_1_size42539-refined unplaced-scaffold na na JJQS01000045.1 = NZ_JJQS01000045.1 Primary Assembly 42452 na scaffold129_1_size2556-refined unplaced-scaffold na na JJQS01000046.1 = NZ_JJQS01000046.1 Primary Assembly 2556 na scaffold78_1_size17008-refined unplaced-scaffold na na JJQS01000047.1 = NZ_JJQS01000047.1 Primary Assembly 17008 na scaffold72_1_size20412-refined unplaced-scaffold na na JJQS01000048.1 = NZ_JJQS01000048.1 Primary Assembly 20412 na scaffold34_1_size37487-refined unplaced-scaffold na na JJQS01000049.1 = NZ_JJQS01000049.1 Primary Assembly 37487 na scaffold10_1_size118847-refined unplaced-scaffold na na JJQS01000050.1 = NZ_JJQS01000050.1 Primary Assembly 118297 na scaffold44_1_size41821-refined unplaced-scaffold na na JJQS01000051.1 = NZ_JJQS01000051.1 Primary Assembly 41821 na scaffold18_1_size52748-refined unplaced-scaffold na na JJQS01000052.1 = NZ_JJQS01000052.1 Primary Assembly 52733 na scaffold145_1_size968-refined unplaced-scaffold na na JJQS01000053.1 = NZ_JJQS01000053.1 Primary Assembly 875 na scaffold36_1_size36437-refined unplaced-scaffold na na JJQS01000054.1 = NZ_JJQS01000054.1 Primary Assembly 36324 na scaffold12_1_size57463-refined unplaced-scaffold na na JJQS01000055.1 = NZ_JJQS01000055.1 Primary Assembly 57192 na scaffold154_1_size519-refined unplaced-scaffold na na JJQS01000056.1 = NZ_JJQS01000056.1 Primary Assembly 519 na scaffold61_1_size22414-refined unplaced-scaffold na na JJQS01000057.1 = NZ_JJQS01000057.1 Primary Assembly 22414 na scaffold124_1_size3200-refined unplaced-scaffold na na JJQS01000058.1 = NZ_JJQS01000058.1 Primary Assembly 3200 na scaffold138_1_size1517-refined unplaced-scaffold na na JJQS01000059.1 = NZ_JJQS01000059.1 Primary Assembly 1517 na scaffold5_1_size108270-refined unplaced-scaffold na na JJQS01000060.1 = NZ_JJQS01000060.1 Primary Assembly 107602 na scaffold13_1_size109025-refined unplaced-scaffold na na JJQS01000061.1 = NZ_JJQS01000061.1 Primary Assembly 108613 na scaffold136_1_size2049-refined unplaced-scaffold na na JJQS01000062.1 = NZ_JJQS01000062.1 Primary Assembly 2049 na scaffold8_1_size88593-refined unplaced-scaffold na na JJQS01000063.1 = NZ_JJQS01000063.1 Primary Assembly 88325 na scaffold108_1_size6321-refined unplaced-scaffold na na JJQS01000064.1 = NZ_JJQS01000064.1 Primary Assembly 6321 na scaffold64_1_size21900-refined unplaced-scaffold na na JJQS01000065.1 = NZ_JJQS01000065.1 Primary Assembly 21897 na scaffold109_1_size6024-refined unplaced-scaffold na na JJQS01000066.1 = NZ_JJQS01000066.1 Primary Assembly 6024 na scaffold52_1_size26072-refined unplaced-scaffold na na JJQS01000067.1 = NZ_JJQS01000067.1 Primary Assembly 26072 na scaffold143_1_size1097-refined unplaced-scaffold na na JJQS01000068.1 = NZ_JJQS01000068.1 Primary Assembly 1097 na scaffold23_1_size91915-refined unplaced-scaffold na na JJQS01000069.1 = NZ_JJQS01000069.1 Primary Assembly 91632 na scaffold14_1_size55320-refined unplaced-scaffold na na JJQS01000070.1 = NZ_JJQS01000070.1 Primary Assembly 55222 na scaffold137_1_size1740-refined unplaced-scaffold na na JJQS01000071.1 = NZ_JJQS01000071.1 Primary Assembly 1740 na scaffold26_1_size45085-refined unplaced-scaffold na na JJQS01000072.1 = NZ_JJQS01000072.1 Primary Assembly 44985 na scaffold55_1_size24406-refined unplaced-scaffold na na JJQS01000073.1 = NZ_JJQS01000073.1 Primary Assembly 24406 na scaffold48_1_size28562-refined unplaced-scaffold na na JJQS01000074.1 = NZ_JJQS01000074.1 Primary Assembly 28362 na scaffold134_1_size2091-refined unplaced-scaffold na na JJQS01000075.1 = NZ_JJQS01000075.1 Primary Assembly 2091 na scaffold106_1_size6627-refined unplaced-scaffold na na JJQS01000076.1 = NZ_JJQS01000076.1 Primary Assembly 6627 na scaffold100_1_size7994-refined unplaced-scaffold na na JJQS01000077.1 = NZ_JJQS01000077.1 Primary Assembly 7994 na scaffold152_1_size535-refined unplaced-scaffold na na JJQS01000078.1 = NZ_JJQS01000078.1 Primary Assembly 535 na scaffold73_1_size21836-refined unplaced-scaffold na na JJQS01000079.1 = NZ_JJQS01000079.1 Primary Assembly 21636 na scaffold141_1_size1263-refined unplaced-scaffold na na JJQS01000080.1 = NZ_JJQS01000080.1 Primary Assembly 1263 na scaffold76_1_size17784-refined unplaced-scaffold na na JJQS01000081.1 = NZ_JJQS01000081.1 Primary Assembly 17784 na scaffold118_1_size3808-refined unplaced-scaffold na na JJQS01000082.1 = NZ_JJQS01000082.1 Primary Assembly 3808 na scaffold101_1_size7988-refined unplaced-scaffold na na JJQS01000083.1 = NZ_JJQS01000083.1 Primary Assembly 7974 na scaffold105_1_size6633-refined unplaced-scaffold na na JJQS01000084.1 = NZ_JJQS01000084.1 Primary Assembly 6633 na scaffold15_1_size83051-refined unplaced-scaffold na na JJQS01000085.1 = NZ_JJQS01000085.1 Primary Assembly 82768 na scaffold99_1_size8412-refined unplaced-scaffold na na JJQS01000086.1 = NZ_JJQS01000086.1 Primary Assembly 8412 na scaffold81_1_size16396-refined unplaced-scaffold na na JJQS01000087.1 = NZ_JJQS01000087.1 Primary Assembly 16396 na scaffold149_1_size610-refined unplaced-scaffold na na JJQS01000088.1 = NZ_JJQS01000088.1 Primary Assembly 610 na scaffold155_1_size506-refined unplaced-scaffold na na JJQS01000089.1 = NZ_JJQS01000089.1 Primary Assembly 506 na scaffold92_1_size11974-refined unplaced-scaffold na na JJQS01000090.1 = NZ_JJQS01000090.1 Primary Assembly 11974 na scaffold60_1_size22810-refined unplaced-scaffold na na JJQS01000091.1 = NZ_JJQS01000091.1 Primary Assembly 22709 na scaffold83_1_size15789-refined unplaced-scaffold na na JJQS01000092.1 = NZ_JJQS01000092.1 Primary Assembly 15789 na scaffold151_1_size535-refined unplaced-scaffold na na JJQS01000093.1 = NZ_JJQS01000093.1 Primary Assembly 535 na scaffold24_1_size47174-refined unplaced-scaffold na na JJQS01000094.1 = NZ_JJQS01000094.1 Primary Assembly 41394 na scaffold45_1_size38842-refined unplaced-scaffold na na JJQS01000095.1 = NZ_JJQS01000095.1 Primary Assembly 38603 na scaffold57_1_size24278-refined unplaced-scaffold na na JJQS01000096.1 = NZ_JJQS01000096.1 Primary Assembly 23978 na scaffold150_1_size549-refined unplaced-scaffold na na JJQS01000097.1 = NZ_JJQS01000097.1 Primary Assembly 549 na scaffold33_1_size40443-refined unplaced-scaffold na na JJQS01000098.1 = NZ_JJQS01000098.1 Primary Assembly 40343 na scaffold91_1_size12439-refined unplaced-scaffold na na JJQS01000099.1 = NZ_JJQS01000099.1 Primary Assembly 12439 na scaffold28_1_size53522-refined unplaced-scaffold na na JJQS01000100.1 = NZ_JJQS01000100.1 Primary Assembly 53212 na scaffold74_1_size18430-refined unplaced-scaffold na na JJQS01000101.1 = NZ_JJQS01000101.1 Primary Assembly 18430 na scaffold120_1_size3652-refined unplaced-scaffold na na JJQS01000102.1 = NZ_JJQS01000102.1 Primary Assembly 3652 na scaffold42_1_size32375-refined unplaced-scaffold na na JJQS01000103.1 = NZ_JJQS01000103.1 Primary Assembly 32375 na scaffold47_1_size30327-refined unplaced-scaffold na na JJQS01000104.1 = NZ_JJQS01000104.1 Primary Assembly 30227 na scaffold133_1_size2219-refined unplaced-scaffold na na JJQS01000105.1 = NZ_JJQS01000105.1 Primary Assembly 2145 na scaffold142_1_size1158-refined unplaced-scaffold na na JJQS01000106.1 = NZ_JJQS01000106.1 Primary Assembly 1158 na scaffold50_1_size26624-refined unplaced-scaffold na na JJQS01000107.1 = NZ_JJQS01000107.1 Primary Assembly 26624 na scaffold66_1_size21451-refined unplaced-scaffold na na JJQS01000108.1 = NZ_JJQS01000108.1 Primary Assembly 21451 na scaffold113_1_size4950-refined unplaced-scaffold na na JJQS01000109.1 = NZ_JJQS01000109.1 Primary Assembly 4868 na scaffold2_1_size124253-refined unplaced-scaffold na na JJQS01000110.1 = NZ_JJQS01000110.1 Primary Assembly 123773 na scaffold86_1_size15084-refined unplaced-scaffold na na JJQS01000111.1 = NZ_JJQS01000111.1 Primary Assembly 14997 na scaffold130_1_size7575-refined unplaced-scaffold na na JJQS01000112.1 = NZ_JJQS01000112.1 Primary Assembly 7435 na scaffold16_1_size53688-refined unplaced-scaffold na na JJQS01000113.1 = NZ_JJQS01000113.1 Primary Assembly 53588 na scaffold49_1_size27714-refined unplaced-scaffold na na JJQS01000114.1 = NZ_JJQS01000114.1 Primary Assembly 27618 na scaffold144_1_size1082-refined unplaced-scaffold na na JJQS01000115.1 = NZ_JJQS01000115.1 Primary Assembly 1082 na scaffold148_1_size713-refined unplaced-scaffold na na JJQS01000116.1 = NZ_JJQS01000116.1 Primary Assembly 713 na scaffold46_1_size31007-refined unplaced-scaffold na na JJQS01000117.1 = NZ_JJQS01000117.1 Primary Assembly 31007 na scaffold32_1_size78454-refined unplaced-scaffold na na JJQS01000118.1 = NZ_JJQS01000118.1 Primary Assembly 78254 na scaffold82_1_size21030-refined unplaced-scaffold na na JJQS01000119.1 = NZ_JJQS01000119.1 Primary Assembly 20942 na scaffold102_1_size7538-refined unplaced-scaffold na na JJQS01000120.1 = NZ_JJQS01000120.1 Primary Assembly 7538 na scaffold98_1_size8476-refined unplaced-scaffold na na JJQS01000121.1 = NZ_JJQS01000121.1 Primary Assembly 8476 na scaffold94_1_size8871-refined unplaced-scaffold na na JJQS01000122.1 = NZ_JJQS01000122.1 Primary Assembly 8991 na scaffold121_1_size3629-refined unplaced-scaffold na na JJQS01000123.1 = NZ_JJQS01000123.1 Primary Assembly 3529 na scaffold111_1_size5536-refined unplaced-scaffold na na JJQS01000124.1 = NZ_JJQS01000124.1 Primary Assembly 5448 na scaffold117_1_size3883-refined unplaced-scaffold na na JJQS01000125.1 = NZ_JJQS01000125.1 Primary Assembly 3883 na scaffold107_1_size6615-refined unplaced-scaffold na na JJQS01000126.1 = NZ_JJQS01000126.1 Primary Assembly 6615 na scaffold43_1_size32306-refined unplaced-scaffold na na JJQS01000127.1 = NZ_JJQS01000127.1 Primary Assembly 32306 na scaffold39_1_size33914-refined unplaced-scaffold na na JJQS01000128.1 = NZ_JJQS01000128.1 Primary Assembly 33914 na scaffold3_1_size177134-refined unplaced-scaffold na na JJQS01000129.1 = NZ_JJQS01000129.1 Primary Assembly 176586 na scaffold112_1_size5032-refined unplaced-scaffold na na JJQS01000130.1 = NZ_JJQS01000130.1 Primary Assembly 4952 na scaffold38_1_size34684-refined unplaced-scaffold na na JJQS01000131.1 = NZ_JJQS01000131.1 Primary Assembly 34400 na scaffold22_1_size49102-refined unplaced-scaffold na na JJQS01000132.1 = NZ_JJQS01000132.1 Primary Assembly 48875 na scaffold67_1_size25378-refined unplaced-scaffold na na JJQS01000133.1 = NZ_JJQS01000133.1 Primary Assembly 25281 na scaffold29_1_size60991-refined unplaced-scaffold na na JJQS01000134.1 = NZ_JJQS01000134.1 Primary Assembly 60873 na scaffold6_1_size83532-refined unplaced-scaffold na na JJQS01000135.1 = NZ_JJQS01000135.1 Primary Assembly 83034 na scaffold128_1_size2645-refined unplaced-scaffold na na JJQS01000136.1 = NZ_JJQS01000136.1 Primary Assembly 2645 na scaffold71_1_size20899-refined unplaced-scaffold na na JJQS01000137.1 = NZ_JJQS01000137.1 Primary Assembly 20899 na scaffold140_1_size1370-refined unplaced-scaffold na na JJQS01000138.1 = NZ_JJQS01000138.1 Primary Assembly 1370 na scaffold153_1_size531-refined unplaced-scaffold na na JJQS01000139.1 = NZ_JJQS01000139.1 Primary Assembly 531 na scaffold146_1_size918-refined unplaced-scaffold na na JJQS01000140.1 = NZ_JJQS01000140.1 Primary Assembly 758 na scaffold68_1_size21274-refined unplaced-scaffold na na JJQS01000141.1 = NZ_JJQS01000141.1 Primary Assembly 21274 na scaffold139_1_size1458-refined unplaced-scaffold na na JJQS01000142.1 = NZ_JJQS01000142.1 Primary Assembly 1458 na scaffold62_1_size22383-refined unplaced-scaffold na na JJQS01000143.1 = NZ_JJQS01000143.1 Primary Assembly 22383 na scaffold95_1_size8857-refined unplaced-scaffold na na JJQS01000144.1 = NZ_JJQS01000144.1 Primary Assembly 8857 na scaffold54_1_size24411-refined unplaced-scaffold na na JJQS01000145.1 = NZ_JJQS01000145.1 Primary Assembly 24411 na scaffold97_1_size8675-refined unplaced-scaffold na na JJQS01000146.1 = NZ_JJQS01000146.1 Primary Assembly 8675 na scaffold87_1_size13988-refined unplaced-scaffold na na JJQS01000147.1 = NZ_JJQS01000147.1 Primary Assembly 13828 na scaffold19_1_size51587-refined unplaced-scaffold na na JJQS01000148.1 = NZ_JJQS01000148.1 Primary Assembly 51373 na scaffold85_1_size15323-refined unplaced-scaffold na na JJQS01000149.1 = NZ_JJQS01000149.1 Primary Assembly 15048 na scaffold89_1_size13338-refined unplaced-scaffold na na JJQS01000150.1 = NZ_JJQS01000150.1 Primary Assembly 13314 na scaffold20_1_size49726-refined unplaced-scaffold na na JJQS01000151.1 = NZ_JJQS01000151.1 Primary Assembly 49448 na scaffold123_1_size3259-refined unplaced-scaffold na na JJQS01000152.1 = NZ_JJQS01000152.1 Primary Assembly 3171 na scaffold41_1_size33597-refined unplaced-scaffold na na JJQS01000153.1 = NZ_JJQS01000153.1 Primary Assembly 33373 na scaffold56_1_size24290-refined unplaced-scaffold na na JJQS01000154.1 = NZ_JJQS01000154.1 Primary Assembly 24090 na scaffold63_1_size22318-refined unplaced-scaffold na na JJQS01000155.1 = NZ_JJQS01000155.1 Primary Assembly 22318 na