# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=1.H.M.2.2 # Taxid: 2209 # BioSample: SAMN02708939 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJQV01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.0x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979275.1 # RefSeq assembly accession: GCF_000979275.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979315.1 GCF_000979315.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold136_1_size3516-refined unplaced-scaffold na na JJQV01000001.1 = NZ_JJQV01000001.1 Primary Assembly 3516 na scaffold28_1_size39633-refined unplaced-scaffold na na JJQV01000002.1 = NZ_JJQV01000002.1 Primary Assembly 39554 na scaffold13_1_size57167-refined unplaced-scaffold na na JJQV01000003.1 = NZ_JJQV01000003.1 Primary Assembly 56929 na scaffold35_1_size33962-refined unplaced-scaffold na na JJQV01000004.1 = NZ_JJQV01000004.1 Primary Assembly 33962 na scaffold4_1_size91061-refined unplaced-scaffold na na JJQV01000005.1 = NZ_JJQV01000005.1 Primary Assembly 90961 na scaffold52_1_size26644-refined unplaced-scaffold na na JJQV01000006.1 = NZ_JJQV01000006.1 Primary Assembly 26644 na scaffold104_1_size8412-refined unplaced-scaffold na na JJQV01000007.1 = NZ_JJQV01000007.1 Primary Assembly 8412 na scaffold33_1_size67002-refined unplaced-scaffold na na JJQV01000008.1 = NZ_JJQV01000008.1 Primary Assembly 67002 na scaffold41_1_size31952-refined unplaced-scaffold na na JJQV01000009.1 = NZ_JJQV01000009.1 Primary Assembly 31952 na scaffold65_1_size21447-refined unplaced-scaffold na na JJQV01000010.1 = NZ_JJQV01000010.1 Primary Assembly 21447 na scaffold58_1_size24414-refined unplaced-scaffold na na JJQV01000011.1 = NZ_JJQV01000011.1 Primary Assembly 24414 na scaffold91_1_size13417-refined unplaced-scaffold na na JJQV01000012.1 = NZ_JJQV01000012.1 Primary Assembly 13417 na scaffold25_1_size41600-refined unplaced-scaffold na na JJQV01000013.1 = NZ_JJQV01000013.1 Primary Assembly 41600 na scaffold149_1_size1517-refined unplaced-scaffold na na JJQV01000014.1 = NZ_JJQV01000014.1 Primary Assembly 1517 na scaffold137_1_size2930-refined unplaced-scaffold na na JJQV01000015.1 = NZ_JJQV01000015.1 Primary Assembly 2930 na scaffold119_1_size4950-refined unplaced-scaffold na na JJQV01000016.1 = NZ_JJQV01000016.1 Primary Assembly 4868 na scaffold10_1_size71312-refined unplaced-scaffold na na JJQV01000017.1 = NZ_JJQV01000017.1 Primary Assembly 70804 na scaffold71_1_size18882-refined unplaced-scaffold na na JJQV01000018.1 = NZ_JJQV01000018.1 Primary Assembly 18882 na scaffold68_1_size20940-refined unplaced-scaffold na na JJQV01000019.1 = NZ_JJQV01000019.1 Primary Assembly 20915 na scaffold113_1_size6039-refined unplaced-scaffold na na JJQV01000020.1 = NZ_JJQV01000020.1 Primary Assembly 5925 na scaffold96_1_size12045-refined unplaced-scaffold na na JJQV01000021.1 = NZ_JJQV01000021.1 Primary Assembly 11945 na scaffold130_1_size3533-refined unplaced-scaffold na na JJQV01000022.1 = NZ_JJQV01000022.1 Primary Assembly 3533 na scaffold125_1_size4622-refined unplaced-scaffold na na JJQV01000023.1 = NZ_JJQV01000023.1 Primary Assembly 4622 na scaffold146_1_size2550-refined unplaced-scaffold na na JJQV01000024.1 = NZ_JJQV01000024.1 Primary Assembly 2550 na scaffold118_1_size5016-refined unplaced-scaffold na na JJQV01000025.1 = NZ_JJQV01000025.1 Primary Assembly 4936 na scaffold122_1_size4511-refined unplaced-scaffold na na JJQV01000026.1 = NZ_JJQV01000026.1 Primary Assembly 4511 na scaffold99_1_size9767-refined unplaced-scaffold na na JJQV01000027.1 = NZ_JJQV01000027.1 Primary Assembly 9767 na scaffold48_1_size27728-refined unplaced-scaffold na na JJQV01000028.1 = NZ_JJQV01000028.1 Primary Assembly 27728 na scaffold142_1_size2133-refined unplaced-scaffold na na JJQV01000029.1 = NZ_JJQV01000029.1 Primary Assembly 2133 na scaffold115_1_size5662-refined unplaced-scaffold na na JJQV01000030.1 = NZ_JJQV01000030.1 Primary Assembly 5665 na scaffold1_1_size217471-refined unplaced-scaffold na na JJQV01000031.1 = NZ_JJQV01000031.1 Primary Assembly 216821 na scaffold8_1_size77409-refined unplaced-scaffold na na JJQV01000032.1 = NZ_JJQV01000032.1 Primary Assembly 77297 na scaffold85_1_size15362-refined unplaced-scaffold na na JJQV01000033.1 = NZ_JJQV01000033.1 Primary Assembly 15362 na scaffold20_1_size48896-refined unplaced-scaffold na na JJQV01000034.1 = NZ_JJQV01000034.1 Primary Assembly 48866 na scaffold98_1_size10400-refined unplaced-scaffold na na JJQV01000035.1 = NZ_JJQV01000035.1 Primary Assembly 10400 na scaffold36_1_size40681-refined unplaced-scaffold na na JJQV01000036.1 = NZ_JJQV01000036.1 Primary Assembly 39978 na scaffold87_1_size15142-refined unplaced-scaffold na na JJQV01000037.1 = NZ_JJQV01000037.1 Primary Assembly 15063 na scaffold73_1_size18448-refined unplaced-scaffold na na JJQV01000038.1 = NZ_JJQV01000038.1 Primary Assembly 18448 na scaffold46_1_size29385-refined unplaced-scaffold na na JJQV01000039.1 = NZ_JJQV01000039.1 Primary Assembly 29385 na scaffold95_1_size18002-refined unplaced-scaffold na na JJQV01000040.1 = NZ_JJQV01000040.1 Primary Assembly 17802 na scaffold21_1_size46731-refined unplaced-scaffold na na JJQV01000041.1 = NZ_JJQV01000041.1 Primary Assembly 46695 na scaffold6_1_size88600-refined unplaced-scaffold na na JJQV01000042.1 = NZ_JJQV01000042.1 Primary Assembly 88537 na scaffold112_1_size8946-refined unplaced-scaffold na na JJQV01000043.1 = NZ_JJQV01000043.1 Primary Assembly 8921 na scaffold79_1_size17008-refined unplaced-scaffold na na JJQV01000044.1 = NZ_JJQV01000044.1 Primary Assembly 17008 na scaffold49_1_size29236-refined unplaced-scaffold na na JJQV01000045.1 = NZ_JJQV01000045.1 Primary Assembly 29040 na scaffold83_1_size16191-refined unplaced-scaffold na na JJQV01000046.1 = NZ_JJQV01000046.1 Primary Assembly 16001 na scaffold75_1_size17681-refined unplaced-scaffold na na JJQV01000047.1 = NZ_JJQV01000047.1 Primary Assembly 17593 na scaffold154_1_size519-refined unplaced-scaffold na na JJQV01000048.1 = NZ_JJQV01000048.1 Primary Assembly 519 na scaffold39_1_size32312-refined unplaced-scaffold na na JJQV01000049.1 = NZ_JJQV01000049.1 Primary Assembly 32312 na scaffold63_1_size22336-refined unplaced-scaffold na na JJQV01000050.1 = NZ_JJQV01000050.1 Primary Assembly 22336 na scaffold88_1_size14841-refined unplaced-scaffold na na JJQV01000051.1 = NZ_JJQV01000051.1 Primary Assembly 14841 na scaffold31_1_size36695-refined unplaced-scaffold na na JJQV01000052.1 = NZ_JJQV01000052.1 Primary Assembly 36695 na scaffold84_1_size16155-refined unplaced-scaffold na na JJQV01000053.1 = NZ_JJQV01000053.1 Primary Assembly 16155 na scaffold54_1_size26064-refined unplaced-scaffold na na JJQV01000054.1 = NZ_JJQV01000054.1 Primary Assembly 26064 na scaffold27_1_size78545-refined unplaced-scaffold na na JJQV01000055.1 = NZ_JJQV01000055.1 Primary Assembly 78342 na scaffold18_1_size93502-refined unplaced-scaffold na na JJQV01000056.1 = NZ_JJQV01000056.1 Primary Assembly 93052 na scaffold97_1_size11954-refined unplaced-scaffold na na JJQV01000057.1 = NZ_JJQV01000057.1 Primary Assembly 11954 na scaffold90_1_size13723-refined unplaced-scaffold na na JJQV01000058.1 = NZ_JJQV01000058.1 Primary Assembly 13523 na scaffold72_1_size21823-refined unplaced-scaffold na na JJQV01000059.1 = NZ_JJQV01000059.1 Primary Assembly 21623 na scaffold138_1_size2888-refined unplaced-scaffold na na JJQV01000060.1 = NZ_JJQV01000060.1 Primary Assembly 2888 na scaffold59_1_size24189-refined unplaced-scaffold na na JJQV01000061.1 = NZ_JJQV01000061.1 Primary Assembly 24089 na scaffold101_1_size8792-refined unplaced-scaffold na na JJQV01000062.1 = NZ_JJQV01000062.1 Primary Assembly 8792 na scaffold103_1_size11150-refined unplaced-scaffold na na JJQV01000063.1 = NZ_JJQV01000063.1 Primary Assembly 11150 na scaffold40_1_size32149-refined unplaced-scaffold na na JJQV01000064.1 = NZ_JJQV01000064.1 Primary Assembly 32049 na scaffold55_1_size25986-refined unplaced-scaffold na na JJQV01000065.1 = NZ_JJQV01000065.1 Primary Assembly 25986 na scaffold110_1_size6555-refined unplaced-scaffold na na JJQV01000066.1 = NZ_JJQV01000066.1 Primary Assembly 6555 na scaffold77_1_size33253-refined unplaced-scaffold na na JJQV01000067.1 = NZ_JJQV01000067.1 Primary Assembly 33177 na scaffold50_1_size34328-refined unplaced-scaffold na na JJQV01000068.1 = NZ_JJQV01000068.1 Primary Assembly 33647 na scaffold106_1_size7991-refined unplaced-scaffold na na JJQV01000069.1 = NZ_JJQV01000069.1 Primary Assembly 7977 na scaffold143_1_size2091-refined unplaced-scaffold na na JJQV01000070.1 = NZ_JJQV01000070.1 Primary Assembly 2091 na scaffold70_1_size20415-refined unplaced-scaffold na na JJQV01000071.1 = NZ_JJQV01000071.1 Primary Assembly 20415 na scaffold123_1_size3996-refined unplaced-scaffold na na JJQV01000072.1 = NZ_JJQV01000072.1 Primary Assembly 3996 na scaffold67_1_size20981-refined unplaced-scaffold na na JJQV01000073.1 = NZ_JJQV01000073.1 Primary Assembly 20981 na scaffold47_1_size28516-refined unplaced-scaffold na na JJQV01000074.1 = NZ_JJQV01000074.1 Primary Assembly 27913 na scaffold126_1_size3808-refined unplaced-scaffold na na JJQV01000075.1 = NZ_JJQV01000075.1 Primary Assembly 3808 na scaffold102_1_size8660-refined unplaced-scaffold na na JJQV01000076.1 = NZ_JJQV01000076.1 Primary Assembly 8660 na scaffold134_1_size3097-refined unplaced-scaffold na na JJQV01000077.1 = NZ_JJQV01000077.1 Primary Assembly 3034 na scaffold81_1_size16500-refined unplaced-scaffold na na JJQV01000078.1 = NZ_JJQV01000078.1 Primary Assembly 16500 na scaffold14_1_size56944-refined unplaced-scaffold na na JJQV01000079.1 = NZ_JJQV01000079.1 Primary Assembly 56658 na scaffold9_1_size73059-refined unplaced-scaffold na na JJQV01000080.1 = NZ_JJQV01000080.1 Primary Assembly 73059 na scaffold51_1_size26647-refined unplaced-scaffold na na JJQV01000081.1 = NZ_JJQV01000081.1 Primary Assembly 26647 na scaffold117_1_size5478-refined unplaced-scaffold na na JJQV01000082.1 = NZ_JJQV01000082.1 Primary Assembly 5278 na scaffold132_1_size3200-refined unplaced-scaffold na na JJQV01000083.1 = NZ_JJQV01000083.1 Primary Assembly 3200 na scaffold78_1_size17074-refined unplaced-scaffold na na JJQV01000084.1 = NZ_JJQV01000084.1 Primary Assembly 16963 na scaffold22_1_size44893-refined unplaced-scaffold na na JJQV01000085.1 = NZ_JJQV01000085.1 Primary Assembly 44811 na scaffold150_1_size1097-refined unplaced-scaffold na na JJQV01000086.1 = NZ_JJQV01000086.1 Primary Assembly 1097 na scaffold139_1_size2799-refined unplaced-scaffold na na JJQV01000087.1 = NZ_JJQV01000087.1 Primary Assembly 2779 na scaffold19_1_size49066-refined unplaced-scaffold na na JJQV01000088.1 = NZ_JJQV01000088.1 Primary Assembly 49066 na scaffold127_1_size3704-refined unplaced-scaffold na na JJQV01000089.1 = NZ_JJQV01000089.1 Primary Assembly 3704 na scaffold141_1_size2353-refined unplaced-scaffold na na JJQV01000090.1 = NZ_JJQV01000090.1 Primary Assembly 2353 na scaffold23_1_size44569-refined unplaced-scaffold na na JJQV01000091.1 = NZ_JJQV01000091.1 Primary Assembly 44369 na scaffold108_1_size6627-refined unplaced-scaffold na na JJQV01000092.1 = NZ_JJQV01000092.1 Primary Assembly 6627 na scaffold100_1_size8906-refined unplaced-scaffold na na JJQV01000093.1 = NZ_JJQV01000093.1 Primary Assembly 8906 na scaffold152_1_size833-refined unplaced-scaffold na na JJQV01000094.1 = NZ_JJQV01000094.1 Primary Assembly 833 na scaffold56_1_size25378-refined unplaced-scaffold na na JJQV01000095.1 = NZ_JJQV01000095.1 Primary Assembly 25278 na scaffold147_1_size1740-refined unplaced-scaffold na na JJQV01000096.1 = NZ_JJQV01000096.1 Primary Assembly 1740 na scaffold61_1_size23161-refined unplaced-scaffold na na JJQV01000097.1 = NZ_JJQV01000097.1 Primary Assembly 23143 na scaffold34_1_size35348-refined unplaced-scaffold na na JJQV01000098.1 = NZ_JJQV01000098.1 Primary Assembly 35348 na scaffold44_1_size30327-refined unplaced-scaffold na na JJQV01000099.1 = NZ_JJQV01000099.1 Primary Assembly 30227 na scaffold26_1_size41418-refined unplaced-scaffold na na JJQV01000100.1 = NZ_JJQV01000100.1 Primary Assembly 41318 na scaffold93_1_size20699-refined unplaced-scaffold na na JJQV01000101.1 = NZ_JJQV01000101.1 Primary Assembly 20701 na scaffold3_1_size153308-refined unplaced-scaffold na na JJQV01000102.1 = NZ_JJQV01000102.1 Primary Assembly 152442 na scaffold60_1_size23552-refined unplaced-scaffold na na JJQV01000103.1 = NZ_JJQV01000103.1 Primary Assembly 23552 na scaffold2_1_size108749-refined unplaced-scaffold na na JJQV01000104.1 = NZ_JJQV01000104.1 Primary Assembly 108308 na scaffold38_1_size32371-refined unplaced-scaffold na na JJQV01000105.1 = NZ_JJQV01000105.1 Primary Assembly 32371 na scaffold86_1_size15214-refined unplaced-scaffold na na JJQV01000106.1 = NZ_JJQV01000106.1 Primary Assembly 15214 na scaffold128_1_size3664-refined unplaced-scaffold na na JJQV01000107.1 = NZ_JJQV01000107.1 Primary Assembly 3664 na scaffold11_1_size69516-refined unplaced-scaffold na na JJQV01000108.1 = NZ_JJQV01000108.1 Primary Assembly 69436 na scaffold131_1_size3366-refined unplaced-scaffold na na JJQV01000109.1 = NZ_JJQV01000109.1 Primary Assembly 3366 na scaffold133_1_size4430-refined unplaced-scaffold na na JJQV01000110.1 = NZ_JJQV01000110.1 Primary Assembly 4230 na scaffold37_1_size54635-refined unplaced-scaffold na na JJQV01000111.1 = NZ_JJQV01000111.1 Primary Assembly 54045 na scaffold43_1_size39182-refined unplaced-scaffold na na JJQV01000112.1 = NZ_JJQV01000112.1 Primary Assembly 38982 na scaffold148_1_size1537-refined unplaced-scaffold na na JJQV01000113.1 = NZ_JJQV01000113.1 Primary Assembly 1537 na scaffold145_1_size2042-refined unplaced-scaffold na na JJQV01000114.1 = NZ_JJQV01000114.1 Primary Assembly 2042 na scaffold109_1_size6627-refined unplaced-scaffold na na JJQV01000115.1 = NZ_JJQV01000115.1 Primary Assembly 6627 na scaffold151_1_size833-refined unplaced-scaffold na na JJQV01000116.1 = NZ_JJQV01000116.1 Primary Assembly 833 na scaffold129_1_size3615-refined unplaced-scaffold na na JJQV01000117.1 = NZ_JJQV01000117.1 Primary Assembly 3515 na scaffold45_1_size29452-refined unplaced-scaffold na na JJQV01000118.1 = NZ_JJQV01000118.1 Primary Assembly 29252 na scaffold114_1_size6024-refined unplaced-scaffold na na JJQV01000119.1 = NZ_JJQV01000119.1 Primary Assembly 6024 na scaffold76_1_size17659-refined unplaced-scaffold na na JJQV01000120.1 = NZ_JJQV01000120.1 Primary Assembly 17571 na scaffold82_1_size16470-refined unplaced-scaffold na na JJQV01000121.1 = NZ_JJQV01000121.1 Primary Assembly 16470 na scaffold140_1_size2738-refined unplaced-scaffold na na JJQV01000122.1 = NZ_JJQV01000122.1 Primary Assembly 2738 na scaffold17_1_size49680-refined unplaced-scaffold na na JJQV01000123.1 = NZ_JJQV01000123.1 Primary Assembly 49448 na scaffold15_1_size53556-refined unplaced-scaffold na na JJQV01000124.1 = NZ_JJQV01000124.1 Primary Assembly 53355 na scaffold111_1_size6321-refined unplaced-scaffold na na JJQV01000125.1 = NZ_JJQV01000125.1 Primary Assembly 6321 na scaffold69_1_size20899-refined unplaced-scaffold na na JJQV01000126.1 = NZ_JJQV01000126.1 Primary Assembly 20899 na scaffold64_1_size21754-refined unplaced-scaffold na na JJQV01000127.1 = NZ_JJQV01000127.1 Primary Assembly 21656 na scaffold74_1_size17983-refined unplaced-scaffold na na JJQV01000128.1 = NZ_JJQV01000128.1 Primary Assembly 17983 na scaffold16_1_size52774-refined unplaced-scaffold na na JJQV01000129.1 = NZ_JJQV01000129.1 Primary Assembly 52759 na scaffold116_1_size8362-refined unplaced-scaffold na na JJQV01000130.1 = NZ_JJQV01000130.1 Primary Assembly 8362 na scaffold30_1_size37484-refined unplaced-scaffold na na JJQV01000131.1 = NZ_JJQV01000131.1 Primary Assembly 37484 na scaffold53_1_size26454-refined unplaced-scaffold na na JJQV01000132.1 = NZ_JJQV01000132.1 Primary Assembly 26368 na scaffold5_1_size184200-refined unplaced-scaffold na na JJQV01000133.1 = NZ_JJQV01000133.1 Primary Assembly 183440 na scaffold7_1_size82784-refined unplaced-scaffold na na JJQV01000134.1 = NZ_JJQV01000134.1 Primary Assembly 82584 na scaffold121_1_size4720-refined unplaced-scaffold na na JJQV01000135.1 = NZ_JJQV01000135.1 Primary Assembly 4720 na scaffold124_1_size3924-refined unplaced-scaffold na na JJQV01000136.1 = NZ_JJQV01000136.1 Primary Assembly 3924 na scaffold62_1_size22383-refined unplaced-scaffold na na JJQV01000137.1 = NZ_JJQV01000137.1 Primary Assembly 22383 na scaffold89_1_size13923-refined unplaced-scaffold na na JJQV01000138.1 = NZ_JJQV01000138.1 Primary Assembly 13837 na scaffold135_1_size3041-refined unplaced-scaffold na na JJQV01000139.1 = NZ_JJQV01000139.1 Primary Assembly 3041 na scaffold105_1_size7994-refined unplaced-scaffold na na JJQV01000140.1 = NZ_JJQV01000140.1 Primary Assembly 7994 na scaffold24_1_size42966-refined unplaced-scaffold na na JJQV01000141.1 = NZ_JJQV01000141.1 Primary Assembly 42866 na scaffold92_1_size13085-refined unplaced-scaffold na na JJQV01000142.1 = NZ_JJQV01000142.1 Primary Assembly 13085 na scaffold42_1_size31760-refined unplaced-scaffold na na JJQV01000143.1 = NZ_JJQV01000143.1 Primary Assembly 31760 na scaffold12_1_size62101-refined unplaced-scaffold na na JJQV01000144.1 = NZ_JJQV01000144.1 Primary Assembly 61983 na scaffold32_1_size36431-refined unplaced-scaffold na na JJQV01000145.1 = NZ_JJQV01000145.1 Primary Assembly 36331 na scaffold144_1_size2049-refined unplaced-scaffold na na JJQV01000146.1 = NZ_JJQV01000146.1 Primary Assembly 2049 na scaffold120_1_size4810-refined unplaced-scaffold na na JJQV01000147.1 = NZ_JJQV01000147.1 Primary Assembly 4810 na scaffold80_1_size16566-refined unplaced-scaffold na na JJQV01000148.1 = NZ_JJQV01000148.1 Primary Assembly 16266 na scaffold57_1_size24417-refined unplaced-scaffold na na JJQV01000149.1 = NZ_JJQV01000149.1 Primary Assembly 24417 na scaffold153_1_size549-refined unplaced-scaffold na na JJQV01000150.1 = NZ_JJQV01000150.1 Primary Assembly 549 na scaffold29_1_size37548-refined unplaced-scaffold na na JJQV01000151.1 = NZ_JJQV01000151.1 Primary Assembly 37548 na scaffold107_1_size6987-refined unplaced-scaffold na na JJQV01000152.1 = NZ_JJQV01000152.1 Primary Assembly 6987 na scaffold94_1_size12436-refined unplaced-scaffold na na JJQV01000153.1 = NZ_JJQV01000153.1 Primary Assembly 12436 na scaffold66_1_size21351-refined unplaced-scaffold na na JJQV01000154.1 = NZ_JJQV01000154.1 Primary Assembly 21251 na