# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=2.F.A.2.4 # Taxid: 2209 # BioSample: SAMN02708981 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJOS01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 42.8x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979345.1 # RefSeq assembly accession: GCF_000979345.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979365.1 GCF_000979365.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold78_1_size14751-refined unplaced-scaffold na na JJOS01000001.1 = NZ_JJOS01000001.1 Primary Assembly 14652 na scaffold1_1_size165191-refined unplaced-scaffold na na JJOS01000002.1 = NZ_JJOS01000002.1 Primary Assembly 165036 na scaffold134_1_size1462-refined unplaced-scaffold na na JJOS01000003.1 = NZ_JJOS01000003.1 Primary Assembly 1372 na scaffold3_1_size248675-refined unplaced-scaffold na na JJOS01000004.1 = NZ_JJOS01000004.1 Primary Assembly 248036 na scaffold119_1_size3626-refined unplaced-scaffold na na JJOS01000005.1 = NZ_JJOS01000005.1 Primary Assembly 3526 na scaffold82_1_size13710-refined unplaced-scaffold na na JJOS01000006.1 = NZ_JJOS01000006.1 Primary Assembly 13610 na scaffold114_1_size4701-refined unplaced-scaffold na na JJOS01000007.1 = NZ_JJOS01000007.1 Primary Assembly 4681 na scaffold99_1_size7619-refined unplaced-scaffold na na JJOS01000008.1 = NZ_JJOS01000008.1 Primary Assembly 7619 na scaffold67_1_size17799-refined unplaced-scaffold na na JJOS01000009.1 = NZ_JJOS01000009.1 Primary Assembly 17799 na scaffold47_1_size27432-refined unplaced-scaffold na na JJOS01000010.1 = NZ_JJOS01000010.1 Primary Assembly 27312 na scaffold11_1_size72283-refined unplaced-scaffold na na JJOS01000011.1 = NZ_JJOS01000011.1 Primary Assembly 71908 na scaffold4_1_size300868-refined unplaced-scaffold na na JJOS01000012.1 = NZ_JJOS01000012.1 Primary Assembly 300128 na scaffold109_1_size5730-refined unplaced-scaffold na na JJOS01000013.1 = NZ_JJOS01000013.1 Primary Assembly 5530 na scaffold146_1_size522-refined unplaced-scaffold na na JJOS01000014.1 = NZ_JJOS01000014.1 Primary Assembly 522 na scaffold104_1_size6595-refined unplaced-scaffold na na JJOS01000015.1 = NZ_JJOS01000015.1 Primary Assembly 6595 na scaffold52_1_size25464-refined unplaced-scaffold na na JJOS01000016.1 = NZ_JJOS01000016.1 Primary Assembly 25450 na scaffold130_1_size1765-refined unplaced-scaffold na na JJOS01000017.1 = NZ_JJOS01000017.1 Primary Assembly 1765 na scaffold44_1_size30841-refined unplaced-scaffold na na JJOS01000018.1 = NZ_JJOS01000018.1 Primary Assembly 30741 na scaffold18_1_size52418-refined unplaced-scaffold na na JJOS01000019.1 = NZ_JJOS01000019.1 Primary Assembly 52190 na scaffold74_1_size15479-refined unplaced-scaffold na na JJOS01000020.1 = NZ_JJOS01000020.1 Primary Assembly 15479 na scaffold36_1_size34794-refined unplaced-scaffold na na JJOS01000021.1 = NZ_JJOS01000021.1 Primary Assembly 34624 na scaffold15_1_size56102-refined unplaced-scaffold na na JJOS01000022.1 = NZ_JJOS01000022.1 Primary Assembly 56102 na scaffold107_1_size6002-refined unplaced-scaffold na na JJOS01000023.1 = NZ_JJOS01000023.1 Primary Assembly 5974 na scaffold139_1_size909-refined unplaced-scaffold na na JJOS01000024.1 = NZ_JJOS01000024.1 Primary Assembly 909 na scaffold62_1_size20304-refined unplaced-scaffold na na JJOS01000025.1 = NZ_JJOS01000025.1 Primary Assembly 20031 na scaffold61_1_size20773-refined unplaced-scaffold na na JJOS01000026.1 = NZ_JJOS01000026.1 Primary Assembly 20592 na scaffold55_1_size23477-refined unplaced-scaffold na na JJOS01000027.1 = NZ_JJOS01000027.1 Primary Assembly 23477 na scaffold24_1_size46629-refined unplaced-scaffold na na JJOS01000028.1 = NZ_JJOS01000028.1 Primary Assembly 46429 na scaffold141_1_size782-refined unplaced-scaffold na na JJOS01000029.1 = NZ_JJOS01000029.1 Primary Assembly 782 na scaffold122_1_size2738-refined unplaced-scaffold na na JJOS01000030.1 = NZ_JJOS01000030.1 Primary Assembly 2738 na scaffold140_1_size882-refined unplaced-scaffold na na JJOS01000031.1 = NZ_JJOS01000031.1 Primary Assembly 882 na scaffold46_1_size28048-refined unplaced-scaffold na na JJOS01000032.1 = NZ_JJOS01000032.1 Primary Assembly 28048 na scaffold106_1_size6094-refined unplaced-scaffold na na JJOS01000033.1 = NZ_JJOS01000033.1 Primary Assembly 6094 na scaffold28_1_size65965-refined unplaced-scaffold na na JJOS01000034.1 = NZ_JJOS01000034.1 Primary Assembly 65460 na scaffold5_1_size196925-refined unplaced-scaffold na na JJOS01000035.1 = NZ_JJOS01000035.1 Primary Assembly 195376 na scaffold21_1_size49720-refined unplaced-scaffold na na JJOS01000036.1 = NZ_JJOS01000036.1 Primary Assembly 49638 na scaffold127_1_size2459-refined unplaced-scaffold na na JJOS01000037.1 = NZ_JJOS01000037.1 Primary Assembly 2353 na scaffold71_1_size16656-refined unplaced-scaffold na na JJOS01000038.1 = NZ_JJOS01000038.1 Primary Assembly 16656 na scaffold115_1_size8230-refined unplaced-scaffold na na JJOS01000039.1 = NZ_JJOS01000039.1 Primary Assembly 7866 na scaffold89_1_size11974-refined unplaced-scaffold na na JJOS01000040.1 = NZ_JJOS01000040.1 Primary Assembly 11974 na scaffold101_1_size7393-refined unplaced-scaffold na na JJOS01000041.1 = NZ_JJOS01000041.1 Primary Assembly 7393 na scaffold77_1_size14781-refined unplaced-scaffold na na JJOS01000042.1 = NZ_JJOS01000042.1 Primary Assembly 14781 na scaffold20_1_size50406-refined unplaced-scaffold na na JJOS01000043.1 = NZ_JJOS01000043.1 Primary Assembly 50406 na scaffold58_1_size21449-refined unplaced-scaffold na na JJOS01000044.1 = NZ_JJOS01000044.1 Primary Assembly 21449 na scaffold35_1_size46488-refined unplaced-scaffold na na JJOS01000045.1 = NZ_JJOS01000045.1 Primary Assembly 46223 na scaffold64_1_size19138-refined unplaced-scaffold na na JJOS01000046.1 = NZ_JJOS01000046.1 Primary Assembly 19138 na scaffold81_1_size13764-refined unplaced-scaffold na na JJOS01000047.1 = NZ_JJOS01000047.1 Primary Assembly 13764 na scaffold88_1_size12194-refined unplaced-scaffold na na JJOS01000048.1 = NZ_JJOS01000048.1 Primary Assembly 12094 na scaffold124_1_size2674-refined unplaced-scaffold na na JJOS01000049.1 = NZ_JJOS01000049.1 Primary Assembly 2674 na scaffold59_1_size20977-refined unplaced-scaffold na na JJOS01000050.1 = NZ_JJOS01000050.1 Primary Assembly 20977 na scaffold143_1_size667-refined unplaced-scaffold na na JJOS01000051.1 = NZ_JJOS01000051.1 Primary Assembly 667 na scaffold49_1_size26296-refined unplaced-scaffold na na JJOS01000052.1 = NZ_JJOS01000052.1 Primary Assembly 26296 na scaffold135_1_size1411-refined unplaced-scaffold na na JJOS01000053.1 = NZ_JJOS01000053.1 Primary Assembly 1411 na scaffold6_1_size99259-refined unplaced-scaffold na na JJOS01000054.1 = NZ_JJOS01000054.1 Primary Assembly 98768 na scaffold103_1_size9220-refined unplaced-scaffold na na JJOS01000055.1 = NZ_JJOS01000055.1 Primary Assembly 8850 na scaffold142_1_size748-refined unplaced-scaffold na na JJOS01000056.1 = NZ_JJOS01000056.1 Primary Assembly 748 na scaffold76_1_size14905-refined unplaced-scaffold na na JJOS01000057.1 = NZ_JJOS01000057.1 Primary Assembly 14905 na scaffold45_1_size30393-refined unplaced-scaffold na na JJOS01000058.1 = NZ_JJOS01000058.1 Primary Assembly 30393 na scaffold56_1_size23197-refined unplaced-scaffold na na JJOS01000059.1 = NZ_JJOS01000059.1 Primary Assembly 22997 na scaffold111_1_size4944-refined unplaced-scaffold na na JJOS01000060.1 = NZ_JJOS01000060.1 Primary Assembly 4814 na scaffold50_1_size26279-refined unplaced-scaffold na na JJOS01000061.1 = NZ_JJOS01000061.1 Primary Assembly 26179 na scaffold113_1_size4733-refined unplaced-scaffold na na JJOS01000062.1 = NZ_JJOS01000062.1 Primary Assembly 4733 na scaffold105_1_size6565-refined unplaced-scaffold na na JJOS01000063.1 = NZ_JJOS01000063.1 Primary Assembly 6565 na scaffold72_1_size16292-refined unplaced-scaffold na na JJOS01000064.1 = NZ_JJOS01000064.1 Primary Assembly 16292 na scaffold116_1_size4064-refined unplaced-scaffold na na JJOS01000065.1 = NZ_JJOS01000065.1 Primary Assembly 3906 na scaffold19_1_size51617-refined unplaced-scaffold na na JJOS01000066.1 = NZ_JJOS01000066.1 Primary Assembly 51517 na scaffold48_1_size35705-refined unplaced-scaffold na na JJOS01000067.1 = NZ_JJOS01000067.1 Primary Assembly 35151 na scaffold93_1_size9830-refined unplaced-scaffold na na JJOS01000068.1 = NZ_JJOS01000068.1 Primary Assembly 9830 na scaffold23_1_size50836-refined unplaced-scaffold na na JJOS01000069.1 = NZ_JJOS01000069.1 Primary Assembly 50623 na scaffold16_1_size55361-refined unplaced-scaffold na na JJOS01000070.1 = NZ_JJOS01000070.1 Primary Assembly 55253 na scaffold95_1_size8902-refined unplaced-scaffold na na JJOS01000071.1 = NZ_JJOS01000071.1 Primary Assembly 8902 na scaffold39_1_size33675-refined unplaced-scaffold na na JJOS01000072.1 = NZ_JJOS01000072.1 Primary Assembly 33675 na scaffold14_1_size62940-refined unplaced-scaffold na na JJOS01000073.1 = NZ_JJOS01000073.1 Primary Assembly 62740 na scaffold136_1_size1258-refined unplaced-scaffold na na JJOS01000074.1 = NZ_JJOS01000074.1 Primary Assembly 1258 na scaffold96_1_size8030-refined unplaced-scaffold na na JJOS01000075.1 = NZ_JJOS01000075.1 Primary Assembly 8030 na scaffold53_1_size24913-refined unplaced-scaffold na na JJOS01000076.1 = NZ_JJOS01000076.1 Primary Assembly 24883 na scaffold79_1_size14001-refined unplaced-scaffold na na JJOS01000077.1 = NZ_JJOS01000077.1 Primary Assembly 13901 na scaffold129_1_size1993-refined unplaced-scaffold na na JJOS01000078.1 = NZ_JJOS01000078.1 Primary Assembly 1993 na scaffold17_1_size54215-refined unplaced-scaffold na na JJOS01000079.1 = NZ_JJOS01000079.1 Primary Assembly 54215 na scaffold42_1_size32321-refined unplaced-scaffold na na JJOS01000080.1 = NZ_JJOS01000080.1 Primary Assembly 32321 na scaffold123_1_size2735-refined unplaced-scaffold na na JJOS01000081.1 = NZ_JJOS01000081.1 Primary Assembly 2735 na scaffold144_1_size611-refined unplaced-scaffold na na JJOS01000082.1 = NZ_JJOS01000082.1 Primary Assembly 611 na scaffold40_1_size32792-refined unplaced-scaffold na na JJOS01000083.1 = NZ_JJOS01000083.1 Primary Assembly 32792 na scaffold131_1_size1758-refined unplaced-scaffold na na JJOS01000084.1 = NZ_JJOS01000084.1 Primary Assembly 1758 na scaffold128_1_size3066-refined unplaced-scaffold na na JJOS01000085.1 = NZ_JJOS01000085.1 Primary Assembly 2969 na scaffold27_1_size53841-refined unplaced-scaffold na na JJOS01000086.1 = NZ_JJOS01000086.1 Primary Assembly 53551 na scaffold57_1_size21771-refined unplaced-scaffold na na JJOS01000087.1 = NZ_JJOS01000087.1 Primary Assembly 21673 na scaffold83_1_size13388-refined unplaced-scaffold na na JJOS01000088.1 = NZ_JJOS01000088.1 Primary Assembly 13388 na scaffold29_1_size42637-refined unplaced-scaffold na na JJOS01000089.1 = NZ_JJOS01000089.1 Primary Assembly 42556 na scaffold33_1_size35969-refined unplaced-scaffold na na JJOS01000090.1 = NZ_JJOS01000090.1 Primary Assembly 35839 na scaffold63_1_size19980-refined unplaced-scaffold na na JJOS01000091.1 = NZ_JJOS01000091.1 Primary Assembly 19980 na scaffold66_1_size17856-refined unplaced-scaffold na na JJOS01000092.1 = NZ_JJOS01000092.1 Primary Assembly 17856 na scaffold87_1_size12588-refined unplaced-scaffold na na JJOS01000093.1 = NZ_JJOS01000093.1 Primary Assembly 12588 na scaffold26_1_size44227-refined unplaced-scaffold na na JJOS01000094.1 = NZ_JJOS01000094.1 Primary Assembly 44227 na scaffold126_1_size2526-refined unplaced-scaffold na na JJOS01000095.1 = NZ_JJOS01000095.1 Primary Assembly 2526 na scaffold138_1_size984-refined unplaced-scaffold na na JJOS01000096.1 = NZ_JJOS01000096.1 Primary Assembly 984 na scaffold51_1_size26235-refined unplaced-scaffold na na JJOS01000097.1 = NZ_JJOS01000097.1 Primary Assembly 26235 na scaffold110_1_size5655-refined unplaced-scaffold na na JJOS01000098.1 = NZ_JJOS01000098.1 Primary Assembly 5655 na scaffold132_1_size1553-refined unplaced-scaffold na na JJOS01000099.1 = NZ_JJOS01000099.1 Primary Assembly 1553 na scaffold125_1_size2594-refined unplaced-scaffold na na JJOS01000100.1 = NZ_JJOS01000100.1 Primary Assembly 2594 na scaffold90_1_size11483-refined unplaced-scaffold na na JJOS01000101.1 = NZ_JJOS01000101.1 Primary Assembly 11483 na scaffold85_1_size12715-refined unplaced-scaffold na na JJOS01000102.1 = NZ_JJOS01000102.1 Primary Assembly 12717 na scaffold137_1_size1097-refined unplaced-scaffold na na JJOS01000103.1 = NZ_JJOS01000103.1 Primary Assembly 1097 na scaffold65_1_size18325-refined unplaced-scaffold na na JJOS01000104.1 = NZ_JJOS01000104.1 Primary Assembly 18325 na scaffold12_1_size71507-refined unplaced-scaffold na na JJOS01000105.1 = NZ_JJOS01000105.1 Primary Assembly 71392 na scaffold91_1_size10329-refined unplaced-scaffold na na JJOS01000106.1 = NZ_JJOS01000106.1 Primary Assembly 10242 na scaffold13_1_size86101-refined unplaced-scaffold na na JJOS01000107.1 = NZ_JJOS01000107.1 Primary Assembly 85728 na scaffold112_1_size4840-refined unplaced-scaffold na na JJOS01000108.1 = NZ_JJOS01000108.1 Primary Assembly 4840 na scaffold34_1_size35299-refined unplaced-scaffold na na JJOS01000109.1 = NZ_JJOS01000109.1 Primary Assembly 35299 na scaffold32_1_size35991-refined unplaced-scaffold na na JJOS01000110.1 = NZ_JJOS01000110.1 Primary Assembly 35791 na scaffold30_1_size41417-refined unplaced-scaffold na na JJOS01000111.1 = NZ_JJOS01000111.1 Primary Assembly 41417 na scaffold97_1_size8017-refined unplaced-scaffold na na JJOS01000112.1 = NZ_JJOS01000112.1 Primary Assembly 8017 na scaffold94_1_size9537-refined unplaced-scaffold na na JJOS01000113.1 = NZ_JJOS01000113.1 Primary Assembly 9512 na scaffold43_1_size31238-refined unplaced-scaffold na na JJOS01000114.1 = NZ_JJOS01000114.1 Primary Assembly 31223 na scaffold54_1_size23653-refined unplaced-scaffold na na JJOS01000115.1 = NZ_JJOS01000115.1 Primary Assembly 23653 na scaffold10_1_size75192-refined unplaced-scaffold na na JJOS01000116.1 = NZ_JJOS01000116.1 Primary Assembly 74698 na scaffold38_1_size33815-refined unplaced-scaffold na na JJOS01000117.1 = NZ_JJOS01000117.1 Primary Assembly 33815 na scaffold9_1_size76273-refined unplaced-scaffold na na JJOS01000118.1 = NZ_JJOS01000118.1 Primary Assembly 75788 na scaffold7_1_size87436-refined unplaced-scaffold na na JJOS01000119.1 = NZ_JJOS01000119.1 Primary Assembly 87204 na scaffold92_1_size9909-refined unplaced-scaffold na na JJOS01000120.1 = NZ_JJOS01000120.1 Primary Assembly 9909 na scaffold73_1_size15788-refined unplaced-scaffold na na JJOS01000121.1 = NZ_JJOS01000121.1 Primary Assembly 15788 na scaffold118_1_size3804-refined unplaced-scaffold na na JJOS01000122.1 = NZ_JJOS01000122.1 Primary Assembly 3804 na scaffold117_1_size3847-refined unplaced-scaffold na na JJOS01000123.1 = NZ_JJOS01000123.1 Primary Assembly 3847 na scaffold2_1_size155226-refined unplaced-scaffold na na JJOS01000124.1 = NZ_JJOS01000124.1 Primary Assembly 151696 na scaffold80_1_size13949-refined unplaced-scaffold na na JJOS01000125.1 = NZ_JJOS01000125.1 Primary Assembly 13949 na scaffold22_1_size49711-refined unplaced-scaffold na na JJOS01000126.1 = NZ_JJOS01000126.1 Primary Assembly 49711 na scaffold68_1_size17792-refined unplaced-scaffold na na JJOS01000127.1 = NZ_JJOS01000127.1 Primary Assembly 17792 na scaffold69_1_size17238-refined unplaced-scaffold na na JJOS01000128.1 = NZ_JJOS01000128.1 Primary Assembly 17238 na scaffold86_1_size12605-refined unplaced-scaffold na na JJOS01000129.1 = NZ_JJOS01000129.1 Primary Assembly 12605 na scaffold133_1_size1515-refined unplaced-scaffold na na JJOS01000130.1 = NZ_JJOS01000130.1 Primary Assembly 1515 na scaffold25_1_size46159-refined unplaced-scaffold na na JJOS01000131.1 = NZ_JJOS01000131.1 Primary Assembly 45918 na scaffold108_1_size5996-refined unplaced-scaffold na na JJOS01000132.1 = NZ_JJOS01000132.1 Primary Assembly 5996 na scaffold121_1_size3200-refined unplaced-scaffold na na JJOS01000133.1 = NZ_JJOS01000133.1 Primary Assembly 3200 na scaffold75_1_size15343-refined unplaced-scaffold na na JJOS01000134.1 = NZ_JJOS01000134.1 Primary Assembly 15259 na scaffold102_1_size7315-refined unplaced-scaffold na na JJOS01000135.1 = NZ_JJOS01000135.1 Primary Assembly 7315 na scaffold37_1_size34710-refined unplaced-scaffold na na JJOS01000136.1 = NZ_JJOS01000136.1 Primary Assembly 34710 na scaffold60_1_size20923-refined unplaced-scaffold na na JJOS01000137.1 = NZ_JJOS01000137.1 Primary Assembly 20923 na scaffold84_1_size13287-refined unplaced-scaffold na na JJOS01000138.1 = NZ_JJOS01000138.1 Primary Assembly 13263 na scaffold31_1_size59199-refined unplaced-scaffold na na JJOS01000139.1 = NZ_JJOS01000139.1 Primary Assembly 59028 na scaffold41_1_size32613-refined unplaced-scaffold na na JJOS01000140.1 = NZ_JJOS01000140.1 Primary Assembly 32495 na scaffold98_1_size7947-refined unplaced-scaffold na na JJOS01000141.1 = NZ_JJOS01000141.1 Primary Assembly 7947 na scaffold8_1_size81632-refined unplaced-scaffold na na JJOS01000142.1 = NZ_JJOS01000142.1 Primary Assembly 81534 na scaffold70_1_size16755-refined unplaced-scaffold na na JJOS01000143.1 = NZ_JJOS01000143.1 Primary Assembly 16755 na scaffold120_1_size3312-refined unplaced-scaffold na na JJOS01000144.1 = NZ_JJOS01000144.1 Primary Assembly 3312 na scaffold100_1_size7531-refined unplaced-scaffold na na JJOS01000145.1 = NZ_JJOS01000145.1 Primary Assembly 7517 na scaffold145_1_size891-refined unplaced-scaffold na na JJOS01000146.1 = NZ_JJOS01000146.1 Primary Assembly 891 na