# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.F.A.2.7 # Taxid: 2209 # BioSample: SAMN02708947 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPH01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.6x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979585.1 # RefSeq assembly accession: GCF_000979585.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979605.1 GCF_000979605.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold24_1_size63041-refined unplaced-scaffold na na JJPH01000001.1 = NZ_JJPH01000001.1 Primary Assembly 62754 na scaffold8_1_size77612-refined unplaced-scaffold na na JJPH01000002.1 = NZ_JJPH01000002.1 Primary Assembly 77448 na scaffold67_1_size21772-refined unplaced-scaffold na na JJPH01000003.1 = NZ_JJPH01000003.1 Primary Assembly 21772 na scaffold28_1_size44169-refined unplaced-scaffold na na JJPH01000004.1 = NZ_JJPH01000004.1 Primary Assembly 44169 na scaffold131_1_size2353-refined unplaced-scaffold na na JJPH01000005.1 = NZ_JJPH01000005.1 Primary Assembly 2353 na scaffold104_1_size7709-refined unplaced-scaffold na na JJPH01000006.1 = NZ_JJPH01000006.1 Primary Assembly 7709 na scaffold127_1_size2655-refined unplaced-scaffold na na JJPH01000007.1 = NZ_JJPH01000007.1 Primary Assembly 2655 na scaffold48_1_size30109-refined unplaced-scaffold na na JJPH01000008.1 = NZ_JJPH01000008.1 Primary Assembly 30109 na scaffold139_1_size1038-refined unplaced-scaffold na na JJPH01000009.1 = NZ_JJPH01000009.1 Primary Assembly 1025 na scaffold113_1_size7595-refined unplaced-scaffold na na JJPH01000010.1 = NZ_JJPH01000010.1 Primary Assembly 7595 na scaffold106_1_size6645-refined unplaced-scaffold na na JJPH01000011.1 = NZ_JJPH01000011.1 Primary Assembly 6645 na scaffold45_1_size34410-refined unplaced-scaffold na na JJPH01000012.1 = NZ_JJPH01000012.1 Primary Assembly 34310 na scaffold65_1_size22071-refined unplaced-scaffold na na JJPH01000013.1 = NZ_JJPH01000013.1 Primary Assembly 22041 na scaffold21_1_size48590-refined unplaced-scaffold na na JJPH01000014.1 = NZ_JJPH01000014.1 Primary Assembly 48490 na scaffold100_1_size8233-refined unplaced-scaffold na na JJPH01000015.1 = NZ_JJPH01000015.1 Primary Assembly 8133 na scaffold93_1_size9603-refined unplaced-scaffold na na JJPH01000016.1 = NZ_JJPH01000016.1 Primary Assembly 9603 na scaffold126_1_size2826-refined unplaced-scaffold na na JJPH01000017.1 = NZ_JJPH01000017.1 Primary Assembly 2826 na scaffold75_1_size18434-refined unplaced-scaffold na na JJPH01000018.1 = NZ_JJPH01000018.1 Primary Assembly 18434 na scaffold3_1_size132114-refined unplaced-scaffold na na JJPH01000019.1 = NZ_JJPH01000019.1 Primary Assembly 131525 na scaffold60_1_size24276-refined unplaced-scaffold na na JJPH01000020.1 = NZ_JJPH01000020.1 Primary Assembly 24276 na scaffold91_1_size11354-refined unplaced-scaffold na na JJPH01000021.1 = NZ_JJPH01000021.1 Primary Assembly 11354 na scaffold1_1_size131612-refined unplaced-scaffold na na JJPH01000022.1 = NZ_JJPH01000022.1 Primary Assembly 131314 na scaffold136_1_size1350-refined unplaced-scaffold na na JJPH01000023.1 = NZ_JJPH01000023.1 Primary Assembly 1350 na scaffold14_1_size54777-refined unplaced-scaffold na na JJPH01000024.1 = NZ_JJPH01000024.1 Primary Assembly 54678 na scaffold40_1_size36312-refined unplaced-scaffold na na JJPH01000025.1 = NZ_JJPH01000025.1 Primary Assembly 36312 na scaffold95_1_size9445-refined unplaced-scaffold na na JJPH01000026.1 = NZ_JJPH01000026.1 Primary Assembly 9445 na scaffold110_1_size5969-refined unplaced-scaffold na na JJPH01000027.1 = NZ_JJPH01000027.1 Primary Assembly 5969 na scaffold115_1_size5050-refined unplaced-scaffold na na JJPH01000028.1 = NZ_JJPH01000028.1 Primary Assembly 4952 na scaffold107_1_size6629-refined unplaced-scaffold na na JJPH01000029.1 = NZ_JJPH01000029.1 Primary Assembly 6629 na scaffold141_1_size574-refined unplaced-scaffold na na JJPH01000030.1 = NZ_JJPH01000030.1 Primary Assembly 573 na scaffold102_1_size7403-refined unplaced-scaffold na na JJPH01000031.1 = NZ_JJPH01000031.1 Primary Assembly 7403 na scaffold132_1_size2231-refined unplaced-scaffold na na JJPH01000032.1 = NZ_JJPH01000032.1 Primary Assembly 2231 na scaffold56_1_size34968-refined unplaced-scaffold na na JJPH01000033.1 = NZ_JJPH01000033.1 Primary Assembly 34968 na scaffold46_1_size32281-refined unplaced-scaffold na na JJPH01000034.1 = NZ_JJPH01000034.1 Primary Assembly 31683 na scaffold119_1_size7668-refined unplaced-scaffold na na JJPH01000035.1 = NZ_JJPH01000035.1 Primary Assembly 4038 na scaffold68_1_size21728-refined unplaced-scaffold na na JJPH01000036.1 = NZ_JJPH01000036.1 Primary Assembly 21644 na scaffold90_1_size11872-refined unplaced-scaffold na na JJPH01000037.1 = NZ_JJPH01000037.1 Primary Assembly 11872 na scaffold47_1_size37851-refined unplaced-scaffold na na JJPH01000038.1 = NZ_JJPH01000038.1 Primary Assembly 37600 na scaffold43_1_size35275-refined unplaced-scaffold na na JJPH01000039.1 = NZ_JJPH01000039.1 Primary Assembly 35275 na scaffold129_1_size2645-refined unplaced-scaffold na na JJPH01000040.1 = NZ_JJPH01000040.1 Primary Assembly 2456 na scaffold135_1_size1563-refined unplaced-scaffold na na JJPH01000041.1 = NZ_JJPH01000041.1 Primary Assembly 1563 na scaffold18_1_size119158-refined unplaced-scaffold na na JJPH01000042.1 = NZ_JJPH01000042.1 Primary Assembly 118717 na scaffold123_1_size3229-refined unplaced-scaffold na na JJPH01000043.1 = NZ_JJPH01000043.1 Primary Assembly 3229 na scaffold30_1_size44120-refined unplaced-scaffold na na JJPH01000044.1 = NZ_JJPH01000044.1 Primary Assembly 44098 na scaffold121_1_size3603-refined unplaced-scaffold na na JJPH01000045.1 = NZ_JJPH01000045.1 Primary Assembly 3603 na scaffold15_1_size54470-refined unplaced-scaffold na na JJPH01000046.1 = NZ_JJPH01000046.1 Primary Assembly 54371 na scaffold86_1_size12381-refined unplaced-scaffold na na JJPH01000047.1 = NZ_JJPH01000047.1 Primary Assembly 11783 na scaffold66_1_size21913-refined unplaced-scaffold na na JJPH01000048.1 = NZ_JJPH01000048.1 Primary Assembly 21913 na scaffold55_1_size27771-refined unplaced-scaffold na na JJPH01000049.1 = NZ_JJPH01000049.1 Primary Assembly 27756 na scaffold29_1_size44126-refined unplaced-scaffold na na JJPH01000050.1 = NZ_JJPH01000050.1 Primary Assembly 44126 na scaffold44_1_size35032-refined unplaced-scaffold na na JJPH01000051.1 = NZ_JJPH01000051.1 Primary Assembly 34932 na scaffold120_1_size3621-refined unplaced-scaffold na na JJPH01000052.1 = NZ_JJPH01000052.1 Primary Assembly 3621 na scaffold11_1_size74801-refined unplaced-scaffold na na JJPH01000053.1 = NZ_JJPH01000053.1 Primary Assembly 74504 na scaffold108_1_size6386-refined unplaced-scaffold na na JJPH01000054.1 = NZ_JJPH01000054.1 Primary Assembly 6386 na scaffold111_1_size10651-refined unplaced-scaffold na na JJPH01000055.1 = NZ_JJPH01000055.1 Primary Assembly 6335 na scaffold134_1_size1871-refined unplaced-scaffold na na JJPH01000056.1 = NZ_JJPH01000056.1 Primary Assembly 1871 na scaffold101_1_size7713-refined unplaced-scaffold na na JJPH01000057.1 = NZ_JJPH01000057.1 Primary Assembly 7645 na scaffold137_1_size1314-refined unplaced-scaffold na na JJPH01000058.1 = NZ_JJPH01000058.1 Primary Assembly 1314 na scaffold83_1_size12932-refined unplaced-scaffold na na JJPH01000059.1 = NZ_JJPH01000059.1 Primary Assembly 12832 na scaffold109_1_size6001-refined unplaced-scaffold na na JJPH01000060.1 = NZ_JJPH01000060.1 Primary Assembly 5905 na scaffold122_1_size3359-refined unplaced-scaffold na na JJPH01000061.1 = NZ_JJPH01000061.1 Primary Assembly 3359 na scaffold22_1_size46815-refined unplaced-scaffold na na JJPH01000062.1 = NZ_JJPH01000062.1 Primary Assembly 46602 na scaffold92_1_size10378-refined unplaced-scaffold na na JJPH01000063.1 = NZ_JJPH01000063.1 Primary Assembly 10378 na scaffold140_1_size701-refined unplaced-scaffold na na JJPH01000064.1 = NZ_JJPH01000064.1 Primary Assembly 701 na scaffold99_1_size8554-refined unplaced-scaffold na na JJPH01000065.1 = NZ_JJPH01000065.1 Primary Assembly 8258 na scaffold125_1_size2937-refined unplaced-scaffold na na JJPH01000066.1 = NZ_JJPH01000066.1 Primary Assembly 2937 na scaffold62_1_size23211-refined unplaced-scaffold na na JJPH01000067.1 = NZ_JJPH01000067.1 Primary Assembly 23129 na scaffold116_1_size4801-refined unplaced-scaffold na na JJPH01000068.1 = NZ_JJPH01000068.1 Primary Assembly 4761 na scaffold73_1_size20936-refined unplaced-scaffold na na JJPH01000069.1 = NZ_JJPH01000069.1 Primary Assembly 20669 na scaffold38_1_size39963-refined unplaced-scaffold na na JJPH01000070.1 = NZ_JJPH01000070.1 Primary Assembly 39963 na scaffold19_1_size49188-refined unplaced-scaffold na na JJPH01000071.1 = NZ_JJPH01000071.1 Primary Assembly 48888 na scaffold27_1_size44213-refined unplaced-scaffold na na JJPH01000072.1 = NZ_JJPH01000072.1 Primary Assembly 44113 na scaffold59_1_size25014-refined unplaced-scaffold na na JJPH01000073.1 = NZ_JJPH01000073.1 Primary Assembly 25014 na scaffold85_1_size24003-refined unplaced-scaffold na na JJPH01000074.1 = NZ_JJPH01000074.1 Primary Assembly 24003 na scaffold32_1_size42619-refined unplaced-scaffold na na JJPH01000075.1 = NZ_JJPH01000075.1 Primary Assembly 42349 na scaffold12_1_size57855-refined unplaced-scaffold na na JJPH01000076.1 = NZ_JJPH01000076.1 Primary Assembly 57855 na scaffold63_1_size31759-refined unplaced-scaffold na na JJPH01000077.1 = NZ_JJPH01000077.1 Primary Assembly 31759 na scaffold87_1_size12172-refined unplaced-scaffold na na JJPH01000078.1 = NZ_JJPH01000078.1 Primary Assembly 12172 na scaffold6_1_size80185-refined unplaced-scaffold na na JJPH01000079.1 = NZ_JJPH01000079.1 Primary Assembly 79876 na scaffold42_1_size35874-refined unplaced-scaffold na na JJPH01000080.1 = NZ_JJPH01000080.1 Primary Assembly 35874 na scaffold142_1_size526-refined unplaced-scaffold na na JJPH01000081.1 = NZ_JJPH01000081.1 Primary Assembly 526 na scaffold52_1_size28450-refined unplaced-scaffold na na JJPH01000082.1 = NZ_JJPH01000082.1 Primary Assembly 28450 na scaffold2_1_size128993-refined unplaced-scaffold na na JJPH01000083.1 = NZ_JJPH01000083.1 Primary Assembly 128806 na scaffold94_1_size9555-refined unplaced-scaffold na na JJPH01000084.1 = NZ_JJPH01000084.1 Primary Assembly 9555 na scaffold98_1_size8643-refined unplaced-scaffold na na JJPH01000085.1 = NZ_JJPH01000085.1 Primary Assembly 8643 na scaffold39_1_size36925-refined unplaced-scaffold na na JJPH01000086.1 = NZ_JJPH01000086.1 Primary Assembly 36925 na scaffold49_1_size29754-refined unplaced-scaffold na na JJPH01000087.1 = NZ_JJPH01000087.1 Primary Assembly 29754 na scaffold74_1_size19818-refined unplaced-scaffold na na JJPH01000088.1 = NZ_JJPH01000088.1 Primary Assembly 19751 na scaffold124_1_size3175-refined unplaced-scaffold na na JJPH01000089.1 = NZ_JJPH01000089.1 Primary Assembly 3175 na scaffold77_1_size16796-refined unplaced-scaffold na na JJPH01000090.1 = NZ_JJPH01000090.1 Primary Assembly 16796 na scaffold133_1_size2093-refined unplaced-scaffold na na JJPH01000091.1 = NZ_JJPH01000091.1 Primary Assembly 2093 na scaffold7_1_size79389-refined unplaced-scaffold na na JJPH01000092.1 = NZ_JJPH01000092.1 Primary Assembly 79292 na scaffold80_1_size14793-refined unplaced-scaffold na na JJPH01000093.1 = NZ_JJPH01000093.1 Primary Assembly 14793 na scaffold112_1_size5730-refined unplaced-scaffold na na JJPH01000094.1 = NZ_JJPH01000094.1 Primary Assembly 5530 na scaffold58_1_size25702-refined unplaced-scaffold na na JJPH01000095.1 = NZ_JJPH01000095.1 Primary Assembly 25702 na scaffold10_1_size77396-refined unplaced-scaffold na na JJPH01000096.1 = NZ_JJPH01000096.1 Primary Assembly 77300 na scaffold128_1_size2655-refined unplaced-scaffold na na JJPH01000097.1 = NZ_JJPH01000097.1 Primary Assembly 2655 na scaffold130_1_size2370-refined unplaced-scaffold na na JJPH01000098.1 = NZ_JJPH01000098.1 Primary Assembly 2370 na scaffold72_1_size21087-refined unplaced-scaffold na na JJPH01000099.1 = NZ_JJPH01000099.1 Primary Assembly 20953 na scaffold26_1_size65235-refined unplaced-scaffold na na JJPH01000100.1 = NZ_JJPH01000100.1 Primary Assembly 52898 na scaffold70_1_size21261-refined unplaced-scaffold na na JJPH01000101.1 = NZ_JJPH01000101.1 Primary Assembly 21261 na scaffold71_1_size21215-refined unplaced-scaffold na na JJPH01000102.1 = NZ_JJPH01000102.1 Primary Assembly 21188 na scaffold36_1_size41027-refined unplaced-scaffold na na JJPH01000103.1 = NZ_JJPH01000103.1 Primary Assembly 40809 na scaffold53_1_size28092-refined unplaced-scaffold na na JJPH01000104.1 = NZ_JJPH01000104.1 Primary Assembly 28092 na scaffold16_1_size52653-refined unplaced-scaffold na na JJPH01000105.1 = NZ_JJPH01000105.1 Primary Assembly 49647 na scaffold31_1_size44028-refined unplaced-scaffold na na JJPH01000106.1 = NZ_JJPH01000106.1 Primary Assembly 44028 na scaffold81_1_size14187-refined unplaced-scaffold na na JJPH01000107.1 = NZ_JJPH01000107.1 Primary Assembly 14187 na scaffold89_1_size11911-refined unplaced-scaffold na na JJPH01000108.1 = NZ_JJPH01000108.1 Primary Assembly 11911 na scaffold105_1_size6785-refined unplaced-scaffold na na JJPH01000109.1 = NZ_JJPH01000109.1 Primary Assembly 6785 na scaffold25_1_size63133-refined unplaced-scaffold na na JJPH01000110.1 = NZ_JJPH01000110.1 Primary Assembly 63033 na scaffold82_1_size13379-refined unplaced-scaffold na na JJPH01000111.1 = NZ_JJPH01000111.1 Primary Assembly 13379 na scaffold114_1_size5377-refined unplaced-scaffold na na JJPH01000112.1 = NZ_JJPH01000112.1 Primary Assembly 5377 na scaffold34_1_size42579-refined unplaced-scaffold na na JJPH01000113.1 = NZ_JJPH01000113.1 Primary Assembly 42579 na scaffold69_1_size21700-refined unplaced-scaffold na na JJPH01000114.1 = NZ_JJPH01000114.1 Primary Assembly 21700 na scaffold20_1_size51342-refined unplaced-scaffold na na JJPH01000115.1 = NZ_JJPH01000115.1 Primary Assembly 50887 na scaffold97_1_size8736-refined unplaced-scaffold na na JJPH01000116.1 = NZ_JJPH01000116.1 Primary Assembly 8736 na scaffold51_1_size41244-refined unplaced-scaffold na na JJPH01000117.1 = NZ_JJPH01000117.1 Primary Assembly 41110 na scaffold118_1_size4315-refined unplaced-scaffold na na JJPH01000118.1 = NZ_JJPH01000118.1 Primary Assembly 4315 na scaffold78_1_size29845-refined unplaced-scaffold na na JJPH01000119.1 = NZ_JJPH01000119.1 Primary Assembly 29845 na scaffold4_1_size173688-refined unplaced-scaffold na na JJPH01000120.1 = NZ_JJPH01000120.1 Primary Assembly 173109 na scaffold76_1_size18075-refined unplaced-scaffold na na JJPH01000121.1 = NZ_JJPH01000121.1 Primary Assembly 18075 na scaffold54_1_size27814-refined unplaced-scaffold na na JJPH01000122.1 = NZ_JJPH01000122.1 Primary Assembly 27814 na scaffold41_1_size36200-refined unplaced-scaffold na na JJPH01000123.1 = NZ_JJPH01000123.1 Primary Assembly 36115 na scaffold9_1_size77455-refined unplaced-scaffold na na JJPH01000124.1 = NZ_JJPH01000124.1 Primary Assembly 77261 na scaffold117_1_size4664-refined unplaced-scaffold na na JJPH01000125.1 = NZ_JJPH01000125.1 Primary Assembly 4496 na scaffold23_1_size45641-refined unplaced-scaffold na na JJPH01000126.1 = NZ_JJPH01000126.1 Primary Assembly 45559 na scaffold61_1_size23640-refined unplaced-scaffold na na JJPH01000127.1 = NZ_JJPH01000127.1 Primary Assembly 23640 na scaffold88_1_size12044-refined unplaced-scaffold na na JJPH01000128.1 = NZ_JJPH01000128.1 Primary Assembly 12044 na scaffold37_1_size40672-refined unplaced-scaffold na na JJPH01000129.1 = NZ_JJPH01000129.1 Primary Assembly 40672 na scaffold35_1_size41480-refined unplaced-scaffold na na JJPH01000130.1 = NZ_JJPH01000130.1 Primary Assembly 41294 na scaffold79_1_size16521-refined unplaced-scaffold na na JJPH01000131.1 = NZ_JJPH01000131.1 Primary Assembly 16421 na scaffold64_1_size36109-refined unplaced-scaffold na na JJPH01000132.1 = NZ_JJPH01000132.1 Primary Assembly 36266 na scaffold50_1_size28649-refined unplaced-scaffold na na JJPH01000133.1 = NZ_JJPH01000133.1 Primary Assembly 28649 na scaffold103_1_size6869-refined unplaced-scaffold na na JJPH01000134.1 = NZ_JJPH01000134.1 Primary Assembly 6869 na scaffold33_1_size77343-refined unplaced-scaffold na na JJPH01000135.1 = NZ_JJPH01000135.1 Primary Assembly 42493 na scaffold17_1_size51699-refined unplaced-scaffold na na JJPH01000136.1 = NZ_JJPH01000136.1 Primary Assembly 51631 na scaffold57_1_size26990-refined unplaced-scaffold na na JJPH01000137.1 = NZ_JJPH01000137.1 Primary Assembly 26990 na scaffold84_1_size12764-refined unplaced-scaffold na na JJPH01000138.1 = NZ_JJPH01000138.1 Primary Assembly 12764 na scaffold96_1_size16476-refined unplaced-scaffold na na JJPH01000139.1 = NZ_JJPH01000139.1 Primary Assembly 16476 na scaffold138_1_size1096-refined unplaced-scaffold na na JJPH01000140.1 = NZ_JJPH01000140.1 Primary Assembly 1096 na scaffold5_1_size83312-refined unplaced-scaffold na na JJPH01000141.1 = NZ_JJPH01000141.1 Primary Assembly 82980 na scaffold13_1_size56537-refined unplaced-scaffold na na JJPH01000142.1 = NZ_JJPH01000142.1 Primary Assembly 56537 na