# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=1.F.A.1B.3 # Taxid: 2209 # BioSample: SAMN02708933 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJQB01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.6x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979845.1 # RefSeq assembly accession: GCF_000979845.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979875.1 GCF_000979875.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold137_1_size2151-refined unplaced-scaffold na na JJQB01000001.1 = NZ_JJQB01000001.1 Primary Assembly 2051 na scaffold14_1_size171351-refined unplaced-scaffold na na JJQB01000002.1 = NZ_JJQB01000002.1 Primary Assembly 171333 na scaffold22_1_size40758-refined unplaced-scaffold na na JJQB01000003.1 = NZ_JJQB01000003.1 Primary Assembly 40600 na scaffold77_1_size13761-refined unplaced-scaffold na na JJQB01000004.1 = NZ_JJQB01000004.1 Primary Assembly 13761 na scaffold71_1_size25821-refined unplaced-scaffold na na JJQB01000005.1 = NZ_JJQB01000005.1 Primary Assembly 25821 na scaffold88_1_size17747-refined unplaced-scaffold na na JJQB01000006.1 = NZ_JJQB01000006.1 Primary Assembly 17657 na scaffold20_1_size42673-refined unplaced-scaffold na na JJQB01000007.1 = NZ_JJQB01000007.1 Primary Assembly 42673 na scaffold89_1_size12472-refined unplaced-scaffold na na JJQB01000008.1 = NZ_JJQB01000008.1 Primary Assembly 12375 na scaffold56_1_size19345-refined unplaced-scaffold na na JJQB01000009.1 = NZ_JJQB01000009.1 Primary Assembly 19427 na scaffold21_1_size40730-refined unplaced-scaffold na na JJQB01000010.1 = NZ_JJQB01000010.1 Primary Assembly 40730 na scaffold13_1_size69425-refined unplaced-scaffold na na JJQB01000011.1 = NZ_JJQB01000011.1 Primary Assembly 69425 na scaffold99_1_size6620-refined unplaced-scaffold na na JJQB01000012.1 = NZ_JJQB01000012.1 Primary Assembly 6620 na scaffold118_1_size4201-refined unplaced-scaffold na na JJQB01000013.1 = NZ_JJQB01000013.1 Primary Assembly 4101 na scaffold126_1_size2437-refined unplaced-scaffold na na JJQB01000014.1 = NZ_JJQB01000014.1 Primary Assembly 2437 na scaffold119_1_size5930-refined unplaced-scaffold na na JJQB01000015.1 = NZ_JJQB01000015.1 Primary Assembly 5830 na scaffold33_1_size43740-refined unplaced-scaffold na na JJQB01000016.1 = NZ_JJQB01000016.1 Primary Assembly 43540 na scaffold114_1_size4228-refined unplaced-scaffold na na JJQB01000017.1 = NZ_JJQB01000017.1 Primary Assembly 4228 na scaffold116_1_size7057-refined unplaced-scaffold na na JJQB01000018.1 = NZ_JJQB01000018.1 Primary Assembly 7057 na scaffold93_1_size8625-refined unplaced-scaffold na na JJQB01000019.1 = NZ_JJQB01000019.1 Primary Assembly 8625 na scaffold123_1_size3166-refined unplaced-scaffold na na JJQB01000020.1 = NZ_JJQB01000020.1 Primary Assembly 3166 na scaffold70_1_size16747-refined unplaced-scaffold na na JJQB01000021.1 = NZ_JJQB01000021.1 Primary Assembly 16747 na scaffold37_1_size66947-refined unplaced-scaffold na na JJQB01000022.1 = NZ_JJQB01000022.1 Primary Assembly 66583 na scaffold12_1_size129130-refined unplaced-scaffold na na JJQB01000023.1 = NZ_JJQB01000023.1 Primary Assembly 128989 na scaffold113_1_size4247-refined unplaced-scaffold na na JJQB01000024.1 = NZ_JJQB01000024.1 Primary Assembly 4247 na scaffold117_1_size3797-refined unplaced-scaffold na na JJQB01000025.1 = NZ_JJQB01000025.1 Primary Assembly 3797 na scaffold84_1_size11508-refined unplaced-scaffold na na JJQB01000026.1 = NZ_JJQB01000026.1 Primary Assembly 11508 na scaffold110_1_size4361-refined unplaced-scaffold na na JJQB01000027.1 = NZ_JJQB01000027.1 Primary Assembly 4361 na scaffold115_1_size4000-refined unplaced-scaffold na na JJQB01000028.1 = NZ_JJQB01000028.1 Primary Assembly 4000 na scaffold1_1_size159400-refined unplaced-scaffold na na JJQB01000029.1 = NZ_JJQB01000029.1 Primary Assembly 159121 na scaffold109_1_size11030-refined unplaced-scaffold na na JJQB01000030.1 = NZ_JJQB01000030.1 Primary Assembly 11030 na scaffold132_1_size1506-refined unplaced-scaffold na na JJQB01000031.1 = NZ_JJQB01000031.1 Primary Assembly 1506 na scaffold87_1_size20672-refined unplaced-scaffold na na JJQB01000032.1 = NZ_JJQB01000032.1 Primary Assembly 20672 na scaffold42_1_size23319-refined unplaced-scaffold na na JJQB01000033.1 = NZ_JJQB01000033.1 Primary Assembly 23319 na scaffold39_1_size44483-refined unplaced-scaffold na na JJQB01000034.1 = NZ_JJQB01000034.1 Primary Assembly 44292 na scaffold75_1_size14108-refined unplaced-scaffold na na JJQB01000035.1 = NZ_JJQB01000035.1 Primary Assembly 14108 na scaffold94_1_size7281-refined unplaced-scaffold na na JJQB01000036.1 = NZ_JJQB01000036.1 Primary Assembly 7281 na scaffold55_1_size23570-refined unplaced-scaffold na na JJQB01000037.1 = NZ_JJQB01000037.1 Primary Assembly 23370 na scaffold120_1_size3593-refined unplaced-scaffold na na JJQB01000038.1 = NZ_JJQB01000038.1 Primary Assembly 3593 na scaffold51_1_size20581-refined unplaced-scaffold na na JJQB01000039.1 = NZ_JJQB01000039.1 Primary Assembly 20581 na scaffold4_1_size97555-refined unplaced-scaffold na na JJQB01000040.1 = NZ_JJQB01000040.1 Primary Assembly 97455 na scaffold35_1_size44256-refined unplaced-scaffold na na JJQB01000041.1 = NZ_JJQB01000041.1 Primary Assembly 44256 na scaffold135_1_size1216-refined unplaced-scaffold na na JJQB01000042.1 = NZ_JJQB01000042.1 Primary Assembly 1216 na scaffold78_1_size13710-refined unplaced-scaffold na na JJQB01000043.1 = NZ_JJQB01000043.1 Primary Assembly 13710 na scaffold92_1_size8837-refined unplaced-scaffold na na JJQB01000044.1 = NZ_JJQB01000044.1 Primary Assembly 8837 na scaffold16_1_size49810-refined unplaced-scaffold na na JJQB01000045.1 = NZ_JJQB01000045.1 Primary Assembly 49810 na scaffold36_1_size27818-refined unplaced-scaffold na na JJQB01000046.1 = NZ_JJQB01000046.1 Primary Assembly 27818 na scaffold47_1_size27328-refined unplaced-scaffold na na JJQB01000047.1 = NZ_JJQB01000047.1 Primary Assembly 27228 na scaffold9_1_size59902-refined unplaced-scaffold na na JJQB01000048.1 = NZ_JJQB01000048.1 Primary Assembly 59902 na scaffold145_1_size521-refined unplaced-scaffold na na JJQB01000049.1 = NZ_JJQB01000049.1 Primary Assembly 521 na scaffold58_1_size18892-refined unplaced-scaffold na na JJQB01000050.1 = NZ_JJQB01000050.1 Primary Assembly 18892 na scaffold52_1_size20532-refined unplaced-scaffold na na JJQB01000051.1 = NZ_JJQB01000051.1 Primary Assembly 20532 na scaffold3_1_size180870-refined unplaced-scaffold na na JJQB01000052.1 = NZ_JJQB01000052.1 Primary Assembly 179941 na scaffold95_1_size13597-refined unplaced-scaffold na na JJQB01000053.1 = NZ_JJQB01000053.1 Primary Assembly 13458 na scaffold112_1_size4317-refined unplaced-scaffold na na JJQB01000054.1 = NZ_JJQB01000054.1 Primary Assembly 4317 na scaffold104_1_size6598-refined unplaced-scaffold na na JJQB01000055.1 = NZ_JJQB01000055.1 Primary Assembly 6276 na scaffold81_1_size12881-refined unplaced-scaffold na na JJQB01000056.1 = NZ_JJQB01000056.1 Primary Assembly 12881 na scaffold46_1_size43274-refined unplaced-scaffold na na JJQB01000057.1 = NZ_JJQB01000057.1 Primary Assembly 43106 na scaffold27_1_size53885-refined unplaced-scaffold na na JJQB01000058.1 = NZ_JJQB01000058.1 Primary Assembly 53823 na scaffold83_1_size11763-refined unplaced-scaffold na na JJQB01000059.1 = NZ_JJQB01000059.1 Primary Assembly 11763 na scaffold68_1_size17421-refined unplaced-scaffold na na JJQB01000060.1 = NZ_JJQB01000060.1 Primary Assembly 17421 na scaffold64_1_size17813-refined unplaced-scaffold na na JJQB01000061.1 = NZ_JJQB01000061.1 Primary Assembly 17813 na scaffold131_1_size1661-refined unplaced-scaffold na na JJQB01000062.1 = NZ_JJQB01000062.1 Primary Assembly 1661 na scaffold86_1_size11228-refined unplaced-scaffold na na JJQB01000063.1 = NZ_JJQB01000063.1 Primary Assembly 11228 na scaffold102_1_size9271-refined unplaced-scaffold na na JJQB01000064.1 = NZ_JJQB01000064.1 Primary Assembly 9320 na scaffold141_1_size772-refined unplaced-scaffold na na JJQB01000065.1 = NZ_JJQB01000065.1 Primary Assembly 772 na scaffold130_1_size1732-refined unplaced-scaffold na na JJQB01000066.1 = NZ_JJQB01000066.1 Primary Assembly 1732 na scaffold142_1_size712-refined unplaced-scaffold na na JJQB01000067.1 = NZ_JJQB01000067.1 Primary Assembly 712 na scaffold17_1_size71008-refined unplaced-scaffold na na JJQB01000068.1 = NZ_JJQB01000068.1 Primary Assembly 70808 na scaffold139_1_size861-refined unplaced-scaffold na na JJQB01000069.1 = NZ_JJQB01000069.1 Primary Assembly 861 na scaffold30_1_size32695-refined unplaced-scaffold na na JJQB01000070.1 = NZ_JJQB01000070.1 Primary Assembly 32695 na scaffold80_1_size22269-refined unplaced-scaffold na na JJQB01000071.1 = NZ_JJQB01000071.1 Primary Assembly 22269 na scaffold91_1_size9568-refined unplaced-scaffold na na JJQB01000072.1 = NZ_JJQB01000072.1 Primary Assembly 9553 na scaffold103_1_size5314-refined unplaced-scaffold na na JJQB01000073.1 = NZ_JJQB01000073.1 Primary Assembly 5314 na scaffold121_1_size3574-refined unplaced-scaffold na na JJQB01000074.1 = NZ_JJQB01000074.1 Primary Assembly 3574 na scaffold65_1_size19910-refined unplaced-scaffold na na JJQB01000075.1 = NZ_JJQB01000075.1 Primary Assembly 19710 na scaffold124_1_size3621-refined unplaced-scaffold na na JJQB01000076.1 = NZ_JJQB01000076.1 Primary Assembly 3621 na scaffold29_1_size80432-refined unplaced-scaffold na na JJQB01000077.1 = NZ_JJQB01000077.1 Primary Assembly 80029 na scaffold57_1_size35471-refined unplaced-scaffold na na JJQB01000078.1 = NZ_JJQB01000078.1 Primary Assembly 35399 na scaffold6_1_size75872-refined unplaced-scaffold na na JJQB01000079.1 = NZ_JJQB01000079.1 Primary Assembly 75472 na scaffold40_1_size38768-refined unplaced-scaffold na na JJQB01000080.1 = NZ_JJQB01000080.1 Primary Assembly 38768 na scaffold96_1_size6869-refined unplaced-scaffold na na JJQB01000081.1 = NZ_JJQB01000081.1 Primary Assembly 6869 na scaffold44_1_size22639-refined unplaced-scaffold na na JJQB01000082.1 = NZ_JJQB01000082.1 Primary Assembly 22639 na scaffold134_1_size1254-refined unplaced-scaffold na na JJQB01000083.1 = NZ_JJQB01000083.1 Primary Assembly 1254 na scaffold41_1_size26300-refined unplaced-scaffold na na JJQB01000084.1 = NZ_JJQB01000084.1 Primary Assembly 26201 na scaffold101_1_size6227-refined unplaced-scaffold na na JJQB01000085.1 = NZ_JJQB01000085.1 Primary Assembly 6227 na scaffold136_1_size1095-refined unplaced-scaffold na na JJQB01000086.1 = NZ_JJQB01000086.1 Primary Assembly 1095 na scaffold67_1_size17556-refined unplaced-scaffold na na JJQB01000087.1 = NZ_JJQB01000087.1 Primary Assembly 17556 na scaffold31_1_size37132-refined unplaced-scaffold na na JJQB01000088.1 = NZ_JJQB01000088.1 Primary Assembly 37132 na scaffold50_1_size20657-refined unplaced-scaffold na na JJQB01000089.1 = NZ_JJQB01000089.1 Primary Assembly 20657 na scaffold69_1_size48895-refined unplaced-scaffold na na JJQB01000090.1 = NZ_JJQB01000090.1 Primary Assembly 48794 na scaffold138_1_size1082-refined unplaced-scaffold na na JJQB01000091.1 = NZ_JJQB01000091.1 Primary Assembly 1082 na scaffold79_1_size13305-refined unplaced-scaffold na na JJQB01000092.1 = NZ_JJQB01000092.1 Primary Assembly 13281 na scaffold74_1_size14272-refined unplaced-scaffold na na JJQB01000093.1 = NZ_JJQB01000093.1 Primary Assembly 14272 na scaffold10_1_size60668-refined unplaced-scaffold na na JJQB01000094.1 = NZ_JJQB01000094.1 Primary Assembly 60568 na scaffold32_1_size48588-refined unplaced-scaffold na na JJQB01000095.1 = NZ_JJQB01000095.1 Primary Assembly 48420 na scaffold98_1_size6630-refined unplaced-scaffold na na JJQB01000096.1 = NZ_JJQB01000096.1 Primary Assembly 6630 na scaffold82_1_size21881-refined unplaced-scaffold na na JJQB01000097.1 = NZ_JJQB01000097.1 Primary Assembly 21733 na scaffold111_1_size5352-refined unplaced-scaffold na na JJQB01000098.1 = NZ_JJQB01000098.1 Primary Assembly 5152 na scaffold133_1_size1280-refined unplaced-scaffold na na JJQB01000099.1 = NZ_JJQB01000099.1 Primary Assembly 1280 na scaffold34_1_size30855-refined unplaced-scaffold na na JJQB01000100.1 = NZ_JJQB01000100.1 Primary Assembly 30687 na scaffold54_1_size32700-refined unplaced-scaffold na na JJQB01000101.1 = NZ_JJQB01000101.1 Primary Assembly 32700 na scaffold25_1_size73855-refined unplaced-scaffold na na JJQB01000102.1 = NZ_JJQB01000102.1 Primary Assembly 73684 na scaffold76_1_size33617-refined unplaced-scaffold na na JJQB01000103.1 = NZ_JJQB01000103.1 Primary Assembly 32990 na scaffold8_1_size97623-refined unplaced-scaffold na na JJQB01000104.1 = NZ_JJQB01000104.1 Primary Assembly 96973 na scaffold24_1_size41389-refined unplaced-scaffold na na JJQB01000105.1 = NZ_JJQB01000105.1 Primary Assembly 41290 na scaffold107_1_size5045-refined unplaced-scaffold na na JJQB01000106.1 = NZ_JJQB01000106.1 Primary Assembly 4947 na scaffold53_1_size46565-refined unplaced-scaffold na na JJQB01000107.1 = NZ_JJQB01000107.1 Primary Assembly 46549 na scaffold48_1_size35956-refined unplaced-scaffold na na JJQB01000108.1 = NZ_JJQB01000108.1 Primary Assembly 35871 na scaffold108_1_size4606-refined unplaced-scaffold na na JJQB01000109.1 = NZ_JJQB01000109.1 Primary Assembly 4606 na scaffold73_1_size15143-refined unplaced-scaffold na na JJQB01000110.1 = NZ_JJQB01000110.1 Primary Assembly 15143 na scaffold140_1_size786-refined unplaced-scaffold na na JJQB01000111.1 = NZ_JJQB01000111.1 Primary Assembly 786 na scaffold127_1_size4263-refined unplaced-scaffold na na JJQB01000112.1 = NZ_JJQB01000112.1 Primary Assembly 4194 na scaffold100_1_size6561-refined unplaced-scaffold na na JJQB01000113.1 = NZ_JJQB01000113.1 Primary Assembly 6561 na scaffold128_1_size2353-refined unplaced-scaffold na na JJQB01000114.1 = NZ_JJQB01000114.1 Primary Assembly 2353 na scaffold38_1_size52992-refined unplaced-scaffold na na JJQB01000115.1 = NZ_JJQB01000115.1 Primary Assembly 52992 na scaffold72_1_size24905-refined unplaced-scaffold na na JJQB01000116.1 = NZ_JJQB01000116.1 Primary Assembly 9536 na scaffold7_1_size64687-refined unplaced-scaffold na na JJQB01000117.1 = NZ_JJQB01000117.1 Primary Assembly 64590 na scaffold18_1_size47149-refined unplaced-scaffold na na JJQB01000118.1 = NZ_JJQB01000118.1 Primary Assembly 47049 na scaffold60_1_size21470-refined unplaced-scaffold na na JJQB01000119.1 = NZ_JJQB01000119.1 Primary Assembly 21170 na scaffold5_1_size160358-refined unplaced-scaffold na na JJQB01000120.1 = NZ_JJQB01000120.1 Primary Assembly 160037 na scaffold26_1_size35897-refined unplaced-scaffold na na JJQB01000121.1 = NZ_JJQB01000121.1 Primary Assembly 35897 na scaffold23_1_size40283-refined unplaced-scaffold na na JJQB01000122.1 = NZ_JJQB01000122.1 Primary Assembly 40185 na scaffold105_1_size5241-refined unplaced-scaffold na na JJQB01000123.1 = NZ_JJQB01000123.1 Primary Assembly 5141 na scaffold122_1_size3229-refined unplaced-scaffold na na JJQB01000124.1 = NZ_JJQB01000124.1 Primary Assembly 3229 na scaffold125_1_size2697-refined unplaced-scaffold na na JJQB01000125.1 = NZ_JJQB01000125.1 Primary Assembly 2697 na scaffold45_1_size22109-refined unplaced-scaffold na na JJQB01000126.1 = NZ_JJQB01000126.1 Primary Assembly 22109 na scaffold59_1_size18875-refined unplaced-scaffold na na JJQB01000127.1 = NZ_JJQB01000127.1 Primary Assembly 18875 na scaffold129_1_size2315-refined unplaced-scaffold na na JJQB01000128.1 = NZ_JJQB01000128.1 Primary Assembly 2315 na scaffold106_1_size4688-refined unplaced-scaffold na na JJQB01000129.1 = NZ_JJQB01000129.1 Primary Assembly 4668 na scaffold85_1_size11322-refined unplaced-scaffold na na JJQB01000130.1 = NZ_JJQB01000130.1 Primary Assembly 11322 na scaffold62_1_size17884-refined unplaced-scaffold na na JJQB01000131.1 = NZ_JJQB01000131.1 Primary Assembly 17884 na scaffold11_1_size78782-refined unplaced-scaffold na na JJQB01000132.1 = NZ_JJQB01000132.1 Primary Assembly 78709 na scaffold49_1_size22841-refined unplaced-scaffold na na JJQB01000133.1 = NZ_JJQB01000133.1 Primary Assembly 22742 na scaffold15_1_size54732-refined unplaced-scaffold na na JJQB01000134.1 = NZ_JJQB01000134.1 Primary Assembly 54732 na scaffold66_1_size17624-refined unplaced-scaffold na na JJQB01000135.1 = NZ_JJQB01000135.1 Primary Assembly 17624 na scaffold97_1_size6690-refined unplaced-scaffold na na JJQB01000136.1 = NZ_JJQB01000136.1 Primary Assembly 6690 na scaffold43_1_size23232-refined unplaced-scaffold na na JJQB01000137.1 = NZ_JJQB01000137.1 Primary Assembly 23232 na scaffold143_1_size699-refined unplaced-scaffold na na JJQB01000138.1 = NZ_JJQB01000138.1 Primary Assembly 699 na scaffold61_1_size18192-refined unplaced-scaffold na na JJQB01000139.1 = NZ_JJQB01000139.1 Primary Assembly 18192 na scaffold2_1_size124812-refined unplaced-scaffold na na JJQB01000140.1 = NZ_JJQB01000140.1 Primary Assembly 124643 na scaffold90_1_size10053-refined unplaced-scaffold na na JJQB01000141.1 = NZ_JJQB01000141.1 Primary Assembly 10053 na scaffold19_1_size54710-refined unplaced-scaffold na na JJQB01000142.1 = NZ_JJQB01000142.1 Primary Assembly 49403 na scaffold28_1_size34721-refined unplaced-scaffold na na JJQB01000143.1 = NZ_JJQB01000143.1 Primary Assembly 34707 na scaffold63_1_size17822-refined unplaced-scaffold na na JJQB01000144.1 = NZ_JJQB01000144.1 Primary Assembly 17822 na