# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=1.H.T.2.3 # Taxid: 2209 # BioSample: SAMN02708941 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJRA01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 45.3x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000980155.1 # RefSeq assembly accession: GCF_000980155.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000980165.1 GCF_000980165.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold80_1_size17026-refined unplaced-scaffold na na JJRA01000001.1 = NZ_JJRA01000001.1 Primary Assembly 17026 na scaffold2_1_size177080-refined unplaced-scaffold na na JJRA01000002.1 = NZ_JJRA01000002.1 Primary Assembly 176434 na scaffold18_1_size52771-refined unplaced-scaffold na na JJRA01000003.1 = NZ_JJRA01000003.1 Primary Assembly 52756 na scaffold30_1_size43017-refined unplaced-scaffold na na JJRA01000004.1 = NZ_JJRA01000004.1 Primary Assembly 42916 na scaffold131_1_size2353-refined unplaced-scaffold na na JJRA01000005.1 = NZ_JJRA01000005.1 Primary Assembly 2353 na scaffold113_1_size5478-refined unplaced-scaffold na na JJRA01000006.1 = NZ_JJRA01000006.1 Primary Assembly 4891 na scaffold130_1_size2552-refined unplaced-scaffold na na JJRA01000007.1 = NZ_JJRA01000007.1 Primary Assembly 2452 na scaffold17_1_size53416-refined unplaced-scaffold na na JJRA01000008.1 = NZ_JJRA01000008.1 Primary Assembly 53416 na scaffold26_1_size44866-refined unplaced-scaffold na na JJRA01000009.1 = NZ_JJRA01000009.1 Primary Assembly 44866 na scaffold87_1_size15266-refined unplaced-scaffold na na JJRA01000010.1 = NZ_JJRA01000010.1 Primary Assembly 15194 na scaffold117_1_size4950-refined unplaced-scaffold na na JJRA01000011.1 = NZ_JJRA01000011.1 Primary Assembly 4868 na scaffold78_1_size17656-refined unplaced-scaffold na na JJRA01000012.1 = NZ_JJRA01000012.1 Primary Assembly 17593 na scaffold6_1_size81471-refined unplaced-scaffold na na JJRA01000013.1 = NZ_JJRA01000013.1 Primary Assembly 81298 na scaffold88_1_size13855-refined unplaced-scaffold na na JJRA01000014.1 = NZ_JJRA01000014.1 Primary Assembly 13855 na scaffold133_1_size2088-refined unplaced-scaffold na na JJRA01000015.1 = NZ_JJRA01000015.1 Primary Assembly 2088 na scaffold40_1_size34748-refined unplaced-scaffold na na JJRA01000016.1 = NZ_JJRA01000016.1 Primary Assembly 34400 na scaffold68_1_size21792-refined unplaced-scaffold na na JJRA01000017.1 = NZ_JJRA01000017.1 Primary Assembly 21679 na scaffold74_1_size20940-refined unplaced-scaffold na na JJRA01000018.1 = NZ_JJRA01000018.1 Primary Assembly 20915 na scaffold29_1_size53746-refined unplaced-scaffold na na JJRA01000019.1 = NZ_JJRA01000019.1 Primary Assembly 53346 na scaffold67_1_size21902-refined unplaced-scaffold na na JJRA01000020.1 = NZ_JJRA01000020.1 Primary Assembly 21900 na scaffold140_1_size1196-refined unplaced-scaffold na na JJRA01000021.1 = NZ_JJRA01000021.1 Primary Assembly 1096 na scaffold129_1_size2673-refined unplaced-scaffold na na JJRA01000022.1 = NZ_JJRA01000022.1 Primary Assembly 2673 na scaffold114_1_size5100-refined unplaced-scaffold na na JJRA01000023.1 = NZ_JJRA01000023.1 Primary Assembly 5100 na scaffold124_1_size3507-refined unplaced-scaffold na na JJRA01000024.1 = NZ_JJRA01000024.1 Primary Assembly 3507 na scaffold59_1_size37008-refined unplaced-scaffold na na JJRA01000025.1 = NZ_JJRA01000025.1 Primary Assembly 20140 na scaffold62_1_size24289-refined unplaced-scaffold na na JJRA01000026.1 = NZ_JJRA01000026.1 Primary Assembly 24089 na scaffold43_1_size33971-refined unplaced-scaffold na na JJRA01000027.1 = NZ_JJRA01000027.1 Primary Assembly 33971 na scaffold72_1_size20978-refined unplaced-scaffold na na JJRA01000028.1 = NZ_JJRA01000028.1 Primary Assembly 20978 na scaffold58_1_size26214-refined unplaced-scaffold na na JJRA01000029.1 = NZ_JJRA01000029.1 Primary Assembly 26214 na scaffold135_1_size2047-refined unplaced-scaffold na na JJRA01000030.1 = NZ_JJRA01000030.1 Primary Assembly 2047 na scaffold41_1_size34590-refined unplaced-scaffold na na JJRA01000031.1 = NZ_JJRA01000031.1 Primary Assembly 34590 na scaffold115_1_size5037-refined unplaced-scaffold na na JJRA01000032.1 = NZ_JJRA01000032.1 Primary Assembly 5037 na scaffold63_1_size41142-refined unplaced-scaffold na na JJRA01000033.1 = NZ_JJRA01000033.1 Primary Assembly 41074 na scaffold55_1_size26674-refined unplaced-scaffold na na JJRA01000034.1 = NZ_JJRA01000034.1 Primary Assembly 26674 na scaffold49_1_size32049-refined unplaced-scaffold na na JJRA01000035.1 = NZ_JJRA01000035.1 Primary Assembly 32049 na scaffold53_1_size29005-refined unplaced-scaffold na na JJRA01000036.1 = NZ_JJRA01000036.1 Primary Assembly 28905 na scaffold125_1_size3342-refined unplaced-scaffold na na JJRA01000037.1 = NZ_JJRA01000037.1 Primary Assembly 3342 na scaffold84_1_size15361-refined unplaced-scaffold na na JJRA01000038.1 = NZ_JJRA01000038.1 Primary Assembly 15361 na scaffold56_1_size26666-refined unplaced-scaffold na na JJRA01000039.1 = NZ_JJRA01000039.1 Primary Assembly 26568 na scaffold57_1_size42534-refined unplaced-scaffold na na JJRA01000040.1 = NZ_JJRA01000040.1 Primary Assembly 42434 na scaffold146_1_size549-refined unplaced-scaffold na na JJRA01000041.1 = NZ_JJRA01000041.1 Primary Assembly 549 na scaffold9_1_size71252-refined unplaced-scaffold na na JJRA01000042.1 = NZ_JJRA01000042.1 Primary Assembly 70741 na scaffold64_1_size22764-refined unplaced-scaffold na na JJRA01000043.1 = NZ_JJRA01000043.1 Primary Assembly 22764 na scaffold25_1_size44906-refined unplaced-scaffold na na JJRA01000044.1 = NZ_JJRA01000044.1 Primary Assembly 44788 na scaffold112_1_size8364-refined unplaced-scaffold na na JJRA01000045.1 = NZ_JJRA01000045.1 Primary Assembly 8364 na scaffold32_1_size41665-refined unplaced-scaffold na na JJRA01000046.1 = NZ_JJRA01000046.1 Primary Assembly 41665 na scaffold27_1_size43763-refined unplaced-scaffold na na JJRA01000047.1 = NZ_JJRA01000047.1 Primary Assembly 43684 na scaffold66_1_size22383-refined unplaced-scaffold na na JJRA01000048.1 = NZ_JJRA01000048.1 Primary Assembly 22383 na scaffold46_1_size32334-refined unplaced-scaffold na na JJRA01000049.1 = NZ_JJRA01000049.1 Primary Assembly 32147 na scaffold12_1_size57011-refined unplaced-scaffold na na JJRA01000050.1 = NZ_JJRA01000050.1 Primary Assembly 56838 na scaffold109_1_size6026-refined unplaced-scaffold na na JJRA01000051.1 = NZ_JJRA01000051.1 Primary Assembly 6026 na scaffold139_1_size1517-refined unplaced-scaffold na na JJRA01000052.1 = NZ_JJRA01000052.1 Primary Assembly 1517 na scaffold38_1_size36423-refined unplaced-scaffold na na JJRA01000053.1 = NZ_JJRA01000053.1 Primary Assembly 36324 na scaffold150_1_size687-refined unplaced-scaffold na na JJRA01000054.1 = NZ_JJRA01000054.1 Primary Assembly 687 na scaffold126_1_size3200-refined unplaced-scaffold na na JJRA01000055.1 = NZ_JJRA01000055.1 Primary Assembly 3200 na scaffold142_1_size1082-refined unplaced-scaffold na na JJRA01000056.1 = NZ_JJRA01000056.1 Primary Assembly 1082 na scaffold16_1_size53821-refined unplaced-scaffold na na JJRA01000057.1 = NZ_JJRA01000057.1 Primary Assembly 53821 na scaffold137_1_size2731-refined unplaced-scaffold na na JJRA01000058.1 = NZ_JJRA01000058.1 Primary Assembly 2731 na scaffold90_1_size20702-refined unplaced-scaffold na na JJRA01000059.1 = NZ_JJRA01000059.1 Primary Assembly 20702 na scaffold144_1_size833-refined unplaced-scaffold na na JJRA01000060.1 = NZ_JJRA01000060.1 Primary Assembly 833 na scaffold141_1_size1097-refined unplaced-scaffold na na JJRA01000061.1 = NZ_JJRA01000061.1 Primary Assembly 1097 na scaffold98_1_size9808-refined unplaced-scaffold na na JJRA01000062.1 = NZ_JJRA01000062.1 Primary Assembly 9808 na scaffold61_1_size24411-refined unplaced-scaffold na na JJRA01000063.1 = NZ_JJRA01000063.1 Primary Assembly 24411 na scaffold108_1_size6321-refined unplaced-scaffold na na JJRA01000064.1 = NZ_JJRA01000064.1 Primary Assembly 6321 na scaffold35_1_size37746-refined unplaced-scaffold na na JJRA01000065.1 = NZ_JJRA01000065.1 Primary Assembly 37447 na scaffold104_1_size13423-refined unplaced-scaffold na na JJRA01000066.1 = NZ_JJRA01000066.1 Primary Assembly 12837 na scaffold106_1_size6627-refined unplaced-scaffold na na JJRA01000067.1 = NZ_JJRA01000067.1 Primary Assembly 6627 na scaffold101_1_size8689-refined unplaced-scaffold na na JJRA01000068.1 = NZ_JJRA01000068.1 Primary Assembly 8689 na scaffold3_1_size88767-refined unplaced-scaffold na na JJRA01000069.1 = NZ_JJRA01000069.1 Primary Assembly 88501 na scaffold1_1_size120794-refined unplaced-scaffold na na JJRA01000070.1 = NZ_JJRA01000070.1 Primary Assembly 120664 na scaffold95_1_size11931-refined unplaced-scaffold na na JJRA01000071.1 = NZ_JJRA01000071.1 Primary Assembly 11931 na scaffold42_1_size56193-refined unplaced-scaffold na na JJRA01000072.1 = NZ_JJRA01000072.1 Primary Assembly 55503 na scaffold22_1_size48908-refined unplaced-scaffold na na JJRA01000073.1 = NZ_JJRA01000073.1 Primary Assembly 48878 na scaffold136_1_size3004-refined unplaced-scaffold na na JJRA01000074.1 = NZ_JJRA01000074.1 Primary Assembly 3004 na scaffold15_1_size69386-refined unplaced-scaffold na na JJRA01000075.1 = NZ_JJRA01000075.1 Primary Assembly 69286 na scaffold65_1_size22440-refined unplaced-scaffold na na JJRA01000076.1 = NZ_JJRA01000076.1 Primary Assembly 22440 na scaffold54_1_size28968-refined unplaced-scaffold na na JJRA01000077.1 = NZ_JJRA01000077.1 Primary Assembly 28768 na scaffold138_1_size1535-refined unplaced-scaffold na na JJRA01000078.1 = NZ_JJRA01000078.1 Primary Assembly 1535 na scaffold102_1_size8412-refined unplaced-scaffold na na JJRA01000079.1 = NZ_JJRA01000079.1 Primary Assembly 8412 na scaffold82_1_size16101-refined unplaced-scaffold na na JJRA01000080.1 = NZ_JJRA01000080.1 Primary Assembly 16001 na scaffold123_1_size3533-refined unplaced-scaffold na na JJRA01000081.1 = NZ_JJRA01000081.1 Primary Assembly 3533 na scaffold44_1_size33885-refined unplaced-scaffold na na JJRA01000082.1 = NZ_JJRA01000082.1 Primary Assembly 33794 na scaffold121_1_size3698-refined unplaced-scaffold na na JJRA01000083.1 = NZ_JJRA01000083.1 Primary Assembly 3698 na scaffold69_1_size21754-refined unplaced-scaffold na na JJRA01000084.1 = NZ_JJRA01000084.1 Primary Assembly 21656 na scaffold51_1_size30327-refined unplaced-scaffold na na JJRA01000085.1 = NZ_JJRA01000085.1 Primary Assembly 30227 na scaffold83_1_size15789-refined unplaced-scaffold na na JJRA01000086.1 = NZ_JJRA01000086.1 Primary Assembly 15789 na scaffold105_1_size6987-refined unplaced-scaffold na na JJRA01000087.1 = NZ_JJRA01000087.1 Primary Assembly 6987 na scaffold20_1_size49937-refined unplaced-scaffold na na JJRA01000088.1 = NZ_JJRA01000088.1 Primary Assembly 49715 na scaffold28_1_size43291-refined unplaced-scaffold na na JJRA01000089.1 = NZ_JJRA01000089.1 Primary Assembly 43291 na scaffold4_1_size82061-refined unplaced-scaffold na na JJRA01000090.1 = NZ_JJRA01000090.1 Primary Assembly 81912 na scaffold118_1_size4733-refined unplaced-scaffold na na JJRA01000091.1 = NZ_JJRA01000091.1 Primary Assembly 4733 na scaffold8_1_size76424-refined unplaced-scaffold na na JJRA01000092.1 = NZ_JJRA01000092.1 Primary Assembly 76284 na scaffold99_1_size8839-refined unplaced-scaffold na na JJRA01000093.1 = NZ_JJRA01000093.1 Primary Assembly 8839 na scaffold7_1_size77478-refined unplaced-scaffold na na JJRA01000094.1 = NZ_JJRA01000094.1 Primary Assembly 77331 na scaffold10_1_size62081-refined unplaced-scaffold na na JJRA01000095.1 = NZ_JJRA01000095.1 Primary Assembly 61983 na scaffold147_1_size752-refined unplaced-scaffold na na JJRA01000096.1 = NZ_JJRA01000096.1 Primary Assembly 643 na scaffold5_1_size100205-refined unplaced-scaffold na na JJRA01000097.1 = NZ_JJRA01000097.1 Primary Assembly 99836 na scaffold52_1_size29695-refined unplaced-scaffold na na JJRA01000098.1 = NZ_JJRA01000098.1 Primary Assembly 29257 na scaffold70_1_size21476-refined unplaced-scaffold na na JJRA01000099.1 = NZ_JJRA01000099.1 Primary Assembly 21375 na scaffold143_1_size923-refined unplaced-scaffold na na JJRA01000100.1 = NZ_JJRA01000100.1 Primary Assembly 758 na scaffold50_1_size39264-refined unplaced-scaffold na na JJRA01000101.1 = NZ_JJRA01000101.1 Primary Assembly 38562 na scaffold119_1_size7649-refined unplaced-scaffold na na JJRA01000102.1 = NZ_JJRA01000102.1 Primary Assembly 7549 na scaffold23_1_size46924-refined unplaced-scaffold na na JJRA01000103.1 = NZ_JJRA01000103.1 Primary Assembly 46752 na scaffold33_1_size78468-refined unplaced-scaffold na na JJRA01000104.1 = NZ_JJRA01000104.1 Primary Assembly 78170 na scaffold100_1_size8824-refined unplaced-scaffold na na JJRA01000105.1 = NZ_JJRA01000105.1 Primary Assembly 8824 na scaffold48_1_size32301-refined unplaced-scaffold na na JJRA01000106.1 = NZ_JJRA01000106.1 Primary Assembly 32301 na scaffold94_1_size11974-refined unplaced-scaffold na na JJRA01000107.1 = NZ_JJRA01000107.1 Primary Assembly 11974 na scaffold110_1_size5991-refined unplaced-scaffold na na JJRA01000108.1 = NZ_JJRA01000108.1 Primary Assembly 5903 na scaffold97_1_size9938-refined unplaced-scaffold na na JJRA01000109.1 = NZ_JJRA01000109.1 Primary Assembly 9938 na scaffold132_1_size2108-refined unplaced-scaffold na na JJRA01000110.1 = NZ_JJRA01000110.1 Primary Assembly 2108 na scaffold96_1_size11722-refined unplaced-scaffold na na JJRA01000111.1 = NZ_JJRA01000111.1 Primary Assembly 11722 na scaffold92_1_size18074-refined unplaced-scaffold na na JJRA01000112.1 = NZ_JJRA01000112.1 Primary Assembly 17050 na scaffold75_1_size20899-refined unplaced-scaffold na na JJRA01000113.1 = NZ_JJRA01000113.1 Primary Assembly 20899 na scaffold116_1_size5032-refined unplaced-scaffold na na JJRA01000114.1 = NZ_JJRA01000114.1 Primary Assembly 4952 na scaffold34_1_size40632-refined unplaced-scaffold na na JJRA01000115.1 = NZ_JJRA01000115.1 Primary Assembly 40545 na scaffold71_1_size21467-refined unplaced-scaffold na na JJRA01000116.1 = NZ_JJRA01000116.1 Primary Assembly 21467 na scaffold39_1_size67553-refined unplaced-scaffold na na JJRA01000117.1 = NZ_JJRA01000117.1 Primary Assembly 67452 na scaffold45_1_size33795-refined unplaced-scaffold na na JJRA01000118.1 = NZ_JJRA01000118.1 Primary Assembly 33795 na scaffold24_1_size46484-refined unplaced-scaffold na na JJRA01000119.1 = NZ_JJRA01000119.1 Primary Assembly 46484 na scaffold14_1_size69591-refined unplaced-scaffold na na JJRA01000120.1 = NZ_JJRA01000120.1 Primary Assembly 69506 na scaffold11_1_size60427-refined unplaced-scaffold na na JJRA01000121.1 = NZ_JJRA01000121.1 Primary Assembly 60228 na scaffold89_1_size13396-refined unplaced-scaffold na na JJRA01000122.1 = NZ_JJRA01000122.1 Primary Assembly 13396 na scaffold145_1_size698-refined unplaced-scaffold na na JJRA01000123.1 = NZ_JJRA01000123.1 Primary Assembly 698 na scaffold127_1_size2799-refined unplaced-scaffold na na JJRA01000124.1 = NZ_JJRA01000124.1 Primary Assembly 2799 na scaffold37_1_size37175-refined unplaced-scaffold na na JJRA01000125.1 = NZ_JJRA01000125.1 Primary Assembly 37029 na scaffold86_1_size15277-refined unplaced-scaffold na na JJRA01000126.1 = NZ_JJRA01000126.1 Primary Assembly 15080 na scaffold36_1_size37485-refined unplaced-scaffold na na JJRA01000127.1 = NZ_JJRA01000127.1 Primary Assembly 37485 na scaffold77_1_size18432-refined unplaced-scaffold na na JJRA01000128.1 = NZ_JJRA01000128.1 Primary Assembly 18432 na scaffold81_1_size16832-refined unplaced-scaffold na na JJRA01000129.1 = NZ_JJRA01000129.1 Primary Assembly 16832 na scaffold76_1_size21869-refined unplaced-scaffold na na JJRA01000130.1 = NZ_JJRA01000130.1 Primary Assembly 21574 na scaffold85_1_size15352-refined unplaced-scaffold na na JJRA01000131.1 = NZ_JJRA01000131.1 Primary Assembly 15352 na scaffold60_1_size24411-refined unplaced-scaffold na na JJRA01000132.1 = NZ_JJRA01000132.1 Primary Assembly 24411 na scaffold134_1_size2084-refined unplaced-scaffold na na JJRA01000133.1 = NZ_JJRA01000133.1 Primary Assembly 2084 na scaffold47_1_size32312-refined unplaced-scaffold na na JJRA01000134.1 = NZ_JJRA01000134.1 Primary Assembly 32312 na scaffold31_1_size42760-refined unplaced-scaffold na na JJRA01000135.1 = NZ_JJRA01000135.1 Primary Assembly 42661 na scaffold103_1_size7994-refined unplaced-scaffold na na JJRA01000136.1 = NZ_JJRA01000136.1 Primary Assembly 7994 na scaffold128_1_size2738-refined unplaced-scaffold na na JJRA01000137.1 = NZ_JJRA01000137.1 Primary Assembly 2738 na scaffold19_1_size51582-refined unplaced-scaffold na na JJRA01000138.1 = NZ_JJRA01000138.1 Primary Assembly 51373 na scaffold111_1_size5923-refined unplaced-scaffold na na JJRA01000139.1 = NZ_JJRA01000139.1 Primary Assembly 5923 na scaffold13_1_size56727-refined unplaced-scaffold na na JJRA01000140.1 = NZ_JJRA01000140.1 Primary Assembly 56614 na scaffold107_1_size6624-refined unplaced-scaffold na na JJRA01000141.1 = NZ_JJRA01000141.1 Primary Assembly 6624 na scaffold73_1_size20950-refined unplaced-scaffold na na JJRA01000142.1 = NZ_JJRA01000142.1 Primary Assembly 20952 na scaffold91_1_size12436-refined unplaced-scaffold na na JJRA01000143.1 = NZ_JJRA01000143.1 Primary Assembly 12436 na scaffold120_1_size3808-refined unplaced-scaffold na na JJRA01000144.1 = NZ_JJRA01000144.1 Primary Assembly 3808 na scaffold79_1_size17571-refined unplaced-scaffold na na JJRA01000145.1 = NZ_JJRA01000145.1 Primary Assembly 17571 na scaffold21_1_size49872-refined unplaced-scaffold na na JJRA01000146.1 = NZ_JJRA01000146.1 Primary Assembly 49476 na scaffold93_1_size12044-refined unplaced-scaffold na na JJRA01000147.1 = NZ_JJRA01000147.1 Primary Assembly 11945 na scaffold122_1_size3597-refined unplaced-scaffold na na JJRA01000148.1 = NZ_JJRA01000148.1 Primary Assembly 3597 na