# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=1.H.T.2.5 # Taxid: 2209 # BioSample: SAMN02708942 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJRB01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.0x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000980175.1 # RefSeq assembly accession: GCF_000980175.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000980185.1 GCF_000980185.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold28_1_size61030-refined unplaced-scaffold na na JJRB01000001.1 = NZ_JJRB01000001.1 Primary Assembly 60688 na scaffold38_1_size35876-refined unplaced-scaffold na na JJRB01000002.1 = NZ_JJRB01000002.1 Primary Assembly 35876 na scaffold54_1_size26065-refined unplaced-scaffold na na JJRB01000003.1 = NZ_JJRB01000003.1 Primary Assembly 26065 na scaffold70_1_size19859-refined unplaced-scaffold na na JJRB01000004.1 = NZ_JJRB01000004.1 Primary Assembly 19720 na scaffold55_1_size25983-refined unplaced-scaffold na na JJRB01000005.1 = NZ_JJRB01000005.1 Primary Assembly 25983 na scaffold27_1_size87204-refined unplaced-scaffold na na JJRB01000006.1 = NZ_JJRB01000006.1 Primary Assembly 86648 na scaffold96_1_size8824-refined unplaced-scaffold na na JJRB01000007.1 = NZ_JJRB01000007.1 Primary Assembly 8824 na scaffold81_1_size15789-refined unplaced-scaffold na na JJRB01000008.1 = NZ_JJRB01000008.1 Primary Assembly 15789 na scaffold117_1_size4950-refined unplaced-scaffold na na JJRB01000009.1 = NZ_JJRB01000009.1 Primary Assembly 4868 na scaffold121_1_size3679-refined unplaced-scaffold na na JJRB01000010.1 = NZ_JJRB01000010.1 Primary Assembly 3679 na scaffold101_1_size7994-refined unplaced-scaffold na na JJRB01000011.1 = NZ_JJRB01000011.1 Primary Assembly 7980 na scaffold75_1_size17564-refined unplaced-scaffold na na JJRB01000012.1 = NZ_JJRB01000012.1 Primary Assembly 17564 na scaffold3_1_size124849-refined unplaced-scaffold na na JJRB01000013.1 = NZ_JJRB01000013.1 Primary Assembly 124655 na scaffold127_1_size3175-refined unplaced-scaffold na na JJRB01000014.1 = NZ_JJRB01000014.1 Primary Assembly 3175 na scaffold68_1_size20940-refined unplaced-scaffold na na JJRB01000015.1 = NZ_JJRB01000015.1 Primary Assembly 20915 na scaffold22_1_size47418-refined unplaced-scaffold na na JJRB01000016.1 = NZ_JJRB01000016.1 Primary Assembly 47314 na scaffold110_1_size6321-refined unplaced-scaffold na na JJRB01000017.1 = NZ_JJRB01000017.1 Primary Assembly 6321 na scaffold105_1_size7017-refined unplaced-scaffold na na JJRB01000018.1 = NZ_JJRB01000018.1 Primary Assembly 7017 na scaffold103_1_size7538-refined unplaced-scaffold na na JJRB01000019.1 = NZ_JJRB01000019.1 Primary Assembly 7538 na scaffold92_1_size11611-refined unplaced-scaffold na na JJRB01000020.1 = NZ_JJRB01000020.1 Primary Assembly 11611 na scaffold10_1_size118830-refined unplaced-scaffold na na JJRB01000021.1 = NZ_JJRB01000021.1 Primary Assembly 118156 na scaffold100_1_size8314-refined unplaced-scaffold na na JJRB01000022.1 = NZ_JJRB01000022.1 Primary Assembly 7914 na scaffold7_1_size150835-refined unplaced-scaffold na na JJRB01000023.1 = NZ_JJRB01000023.1 Primary Assembly 150473 na scaffold18_1_size52857-refined unplaced-scaffold na na JJRB01000024.1 = NZ_JJRB01000024.1 Primary Assembly 52794 na scaffold87_1_size13787-refined unplaced-scaffold na na JJRB01000025.1 = NZ_JJRB01000025.1 Primary Assembly 13541 na scaffold142_1_size522-refined unplaced-scaffold na na JJRB01000026.1 = NZ_JJRB01000026.1 Primary Assembly 522 na scaffold1_1_size162956-refined unplaced-scaffold na na JJRB01000027.1 = NZ_JJRB01000027.1 Primary Assembly 162429 na scaffold131_1_size2047-refined unplaced-scaffold na na JJRB01000028.1 = NZ_JJRB01000028.1 Primary Assembly 2047 na scaffold91_1_size11942-refined unplaced-scaffold na na JJRB01000029.1 = NZ_JJRB01000029.1 Primary Assembly 11942 na scaffold33_1_size41665-refined unplaced-scaffold na na JJRB01000030.1 = NZ_JJRB01000030.1 Primary Assembly 41665 na scaffold107_1_size6900-refined unplaced-scaffold na na JJRB01000031.1 = NZ_JJRB01000031.1 Primary Assembly 6900 na scaffold138_1_size1084-refined unplaced-scaffold na na JJRB01000032.1 = NZ_JJRB01000032.1 Primary Assembly 1084 na scaffold89_1_size13292-refined unplaced-scaffold na na JJRB01000033.1 = NZ_JJRB01000033.1 Primary Assembly 13280 na scaffold36_1_size36695-refined unplaced-scaffold na na JJRB01000034.1 = NZ_JJRB01000034.1 Primary Assembly 36695 na scaffold78_1_size17008-refined unplaced-scaffold na na JJRB01000035.1 = NZ_JJRB01000035.1 Primary Assembly 17008 na scaffold72_1_size18431-refined unplaced-scaffold na na JJRB01000036.1 = NZ_JJRB01000036.1 Primary Assembly 18431 na scaffold67_1_size20978-refined unplaced-scaffold na na JJRB01000037.1 = NZ_JJRB01000037.1 Primary Assembly 20978 na scaffold57_1_size23561-refined unplaced-scaffold na na JJRB01000038.1 = NZ_JJRB01000038.1 Primary Assembly 23561 na scaffold90_1_size12436-refined unplaced-scaffold na na JJRB01000039.1 = NZ_JJRB01000039.1 Primary Assembly 12436 na scaffold16_1_size53843-refined unplaced-scaffold na na JJRB01000040.1 = NZ_JJRB01000040.1 Primary Assembly 53843 na scaffold5_1_size86065-refined unplaced-scaffold na na JJRB01000041.1 = NZ_JJRB01000041.1 Primary Assembly 85765 na scaffold42_1_size33930-refined unplaced-scaffold na na JJRB01000042.1 = NZ_JJRB01000042.1 Primary Assembly 33836 na scaffold25_1_size44818-refined unplaced-scaffold na na JJRB01000043.1 = NZ_JJRB01000043.1 Primary Assembly 44818 na scaffold114_1_size5565-refined unplaced-scaffold na na JJRB01000044.1 = NZ_JJRB01000044.1 Primary Assembly 5322 na scaffold140_1_size549-refined unplaced-scaffold na na JJRB01000045.1 = NZ_JJRB01000045.1 Primary Assembly 549 na scaffold31_1_size42601-refined unplaced-scaffold na na JJRB01000046.1 = NZ_JJRB01000046.1 Primary Assembly 42434 na scaffold124_1_size3317-refined unplaced-scaffold na na JJRB01000047.1 = NZ_JJRB01000047.1 Primary Assembly 3317 na scaffold126_1_size3200-refined unplaced-scaffold na na JJRB01000048.1 = NZ_JJRB01000048.1 Primary Assembly 3200 na scaffold60_1_size22775-refined unplaced-scaffold na na JJRB01000049.1 = NZ_JJRB01000049.1 Primary Assembly 22786 na scaffold14_1_size62083-refined unplaced-scaffold na na JJRB01000050.1 = NZ_JJRB01000050.1 Primary Assembly 61983 na scaffold59_1_size23003-refined unplaced-scaffold na na JJRB01000051.1 = NZ_JJRB01000051.1 Primary Assembly 22903 na scaffold125_1_size7615-refined unplaced-scaffold na na JJRB01000052.1 = NZ_JJRB01000052.1 Primary Assembly 7139 na scaffold135_1_size1517-refined unplaced-scaffold na na JJRB01000053.1 = NZ_JJRB01000053.1 Primary Assembly 1517 na scaffold118_1_size4751-refined unplaced-scaffold na na JJRB01000054.1 = NZ_JJRB01000054.1 Primary Assembly 4751 na scaffold99_1_size8362-refined unplaced-scaffold na na JJRB01000055.1 = NZ_JJRB01000055.1 Primary Assembly 8362 na scaffold76_1_size17285-refined unplaced-scaffold na na JJRB01000056.1 = NZ_JJRB01000056.1 Primary Assembly 17285 na scaffold95_1_size8861-refined unplaced-scaffold na na JJRB01000057.1 = NZ_JJRB01000057.1 Primary Assembly 8861 na scaffold115_1_size5060-refined unplaced-scaffold na na JJRB01000058.1 = NZ_JJRB01000058.1 Primary Assembly 4899 na scaffold69_1_size20901-refined unplaced-scaffold na na JJRB01000059.1 = NZ_JJRB01000059.1 Primary Assembly 20901 na scaffold74_1_size17890-refined unplaced-scaffold na na JJRB01000060.1 = NZ_JJRB01000060.1 Primary Assembly 17890 na scaffold104_1_size7794-refined unplaced-scaffold na na JJRB01000061.1 = NZ_JJRB01000061.1 Primary Assembly 7544 na scaffold106_1_size6968-refined unplaced-scaffold na na JJRB01000062.1 = NZ_JJRB01000062.1 Primary Assembly 6968 na scaffold113_1_size5993-refined unplaced-scaffold na na JJRB01000063.1 = NZ_JJRB01000063.1 Primary Assembly 5927 na scaffold66_1_size21113-refined unplaced-scaffold na na JJRB01000064.1 = NZ_JJRB01000064.1 Primary Assembly 21013 na scaffold129_1_size2738-refined unplaced-scaffold na na JJRB01000065.1 = NZ_JJRB01000065.1 Primary Assembly 2738 na scaffold45_1_size32304-refined unplaced-scaffold na na JJRB01000066.1 = NZ_JJRB01000066.1 Primary Assembly 32304 na scaffold52_1_size26641-refined unplaced-scaffold na na JJRB01000067.1 = NZ_JJRB01000067.1 Primary Assembly 26641 na scaffold62_1_size22183-refined unplaced-scaffold na na JJRB01000068.1 = NZ_JJRB01000068.1 Primary Assembly 22061 na scaffold82_1_size15362-refined unplaced-scaffold na na JJRB01000069.1 = NZ_JJRB01000069.1 Primary Assembly 15165 na scaffold141_1_size546-refined unplaced-scaffold na na JJRB01000070.1 = NZ_JJRB01000070.1 Primary Assembly 546 na scaffold34_1_size40908-refined unplaced-scaffold na na JJRB01000071.1 = NZ_JJRB01000071.1 Primary Assembly 40908 na scaffold102_1_size7994-refined unplaced-scaffold na na JJRB01000072.1 = NZ_JJRB01000072.1 Primary Assembly 7994 na scaffold77_1_size17020-refined unplaced-scaffold na na JJRB01000073.1 = NZ_JJRB01000073.1 Primary Assembly 16565 na scaffold132_1_size2013-refined unplaced-scaffold na na JJRB01000074.1 = NZ_JJRB01000074.1 Primary Assembly 2013 na scaffold50_1_size29348-refined unplaced-scaffold na na JJRB01000075.1 = NZ_JJRB01000075.1 Primary Assembly 29012 na scaffold84_1_size15058-refined unplaced-scaffold na na JJRB01000076.1 = NZ_JJRB01000076.1 Primary Assembly 15058 na scaffold71_1_size21935-refined unplaced-scaffold na na JJRB01000077.1 = NZ_JJRB01000077.1 Primary Assembly 21667 na scaffold56_1_size24411-refined unplaced-scaffold na na JJRB01000078.1 = NZ_JJRB01000078.1 Primary Assembly 24411 na scaffold108_1_size6627-refined unplaced-scaffold na na JJRB01000079.1 = NZ_JJRB01000079.1 Primary Assembly 6627 na scaffold23_1_size46746-refined unplaced-scaffold na na JJRB01000080.1 = NZ_JJRB01000080.1 Primary Assembly 46710 na scaffold58_1_size23161-refined unplaced-scaffold na na JJRB01000081.1 = NZ_JJRB01000081.1 Primary Assembly 23143 na scaffold9_1_size77238-refined unplaced-scaffold na na JJRB01000082.1 = NZ_JJRB01000082.1 Primary Assembly 77200 na scaffold111_1_size6104-refined unplaced-scaffold na na JJRB01000083.1 = NZ_JJRB01000083.1 Primary Assembly 6016 na scaffold4_1_size108702-refined unplaced-scaffold na na JJRB01000084.1 = NZ_JJRB01000084.1 Primary Assembly 108317 na scaffold48_1_size30322-refined unplaced-scaffold na na JJRB01000085.1 = NZ_JJRB01000085.1 Primary Assembly 30227 na scaffold49_1_size30254-refined unplaced-scaffold na na JJRB01000086.1 = NZ_JJRB01000086.1 Primary Assembly 30243 na scaffold136_1_size2696-refined unplaced-scaffold na na JJRB01000087.1 = NZ_JJRB01000087.1 Primary Assembly 2570 na scaffold29_1_size53582-refined unplaced-scaffold na na JJRB01000088.1 = NZ_JJRB01000088.1 Primary Assembly 53282 na scaffold79_1_size16827-refined unplaced-scaffold na na JJRB01000089.1 = NZ_JJRB01000089.1 Primary Assembly 16734 na scaffold93_1_size11122-refined unplaced-scaffold na na JJRB01000090.1 = NZ_JJRB01000090.1 Primary Assembly 11120 na scaffold40_1_size34590-refined unplaced-scaffold na na JJRB01000091.1 = NZ_JJRB01000091.1 Primary Assembly 34590 na scaffold123_1_size3342-refined unplaced-scaffold na na JJRB01000092.1 = NZ_JJRB01000092.1 Primary Assembly 3342 na scaffold35_1_size37484-refined unplaced-scaffold na na JJRB01000093.1 = NZ_JJRB01000093.1 Primary Assembly 37484 na scaffold128_1_size2799-refined unplaced-scaffold na na JJRB01000094.1 = NZ_JJRB01000094.1 Primary Assembly 2779 na scaffold80_1_size16208-refined unplaced-scaffold na na JJRB01000095.1 = NZ_JJRB01000095.1 Primary Assembly 16007 na scaffold137_1_size1097-refined unplaced-scaffold na na JJRB01000096.1 = NZ_JJRB01000096.1 Primary Assembly 1097 na scaffold65_1_size21610-refined unplaced-scaffold na na JJRB01000097.1 = NZ_JJRB01000097.1 Primary Assembly 21610 na scaffold134_1_size1537-refined unplaced-scaffold na na JJRB01000098.1 = NZ_JJRB01000098.1 Primary Assembly 1537 na scaffold41_1_size33949-refined unplaced-scaffold na na JJRB01000099.1 = NZ_JJRB01000099.1 Primary Assembly 33949 na scaffold39_1_size35320-refined unplaced-scaffold na na JJRB01000100.1 = NZ_JJRB01000100.1 Primary Assembly 35320 na scaffold17_1_size53499-refined unplaced-scaffold na na JJRB01000101.1 = NZ_JJRB01000101.1 Primary Assembly 53331 na scaffold120_1_size3695-refined unplaced-scaffold na na JJRB01000102.1 = NZ_JJRB01000102.1 Primary Assembly 3710 na scaffold12_1_size81678-refined unplaced-scaffold na na JJRB01000103.1 = NZ_JJRB01000103.1 Primary Assembly 81516 na scaffold61_1_size22383-refined unplaced-scaffold na na JJRB01000104.1 = NZ_JJRB01000104.1 Primary Assembly 22383 na scaffold116_1_size5032-refined unplaced-scaffold na na JJRB01000105.1 = NZ_JJRB01000105.1 Primary Assembly 4952 na scaffold15_1_size57446-refined unplaced-scaffold na na JJRB01000106.1 = NZ_JJRB01000106.1 Primary Assembly 57212 na scaffold109_1_size6345-refined unplaced-scaffold na na JJRB01000107.1 = NZ_JJRB01000107.1 Primary Assembly 6345 na scaffold88_1_size13388-refined unplaced-scaffold na na JJRB01000108.1 = NZ_JJRB01000108.1 Primary Assembly 13388 na scaffold119_1_size3808-refined unplaced-scaffold na na JJRB01000109.1 = NZ_JJRB01000109.1 Primary Assembly 3808 na scaffold112_1_size6024-refined unplaced-scaffold na na JJRB01000110.1 = NZ_JJRB01000110.1 Primary Assembly 6024 na scaffold83_1_size15361-refined unplaced-scaffold na na JJRB01000111.1 = NZ_JJRB01000111.1 Primary Assembly 15361 na scaffold98_1_size8412-refined unplaced-scaffold na na JJRB01000112.1 = NZ_JJRB01000112.1 Primary Assembly 8412 na scaffold13_1_size71637-refined unplaced-scaffold na na JJRB01000113.1 = NZ_JJRB01000113.1 Primary Assembly 71178 na scaffold8_1_size78039-refined unplaced-scaffold na na JJRB01000114.1 = NZ_JJRB01000114.1 Primary Assembly 77722 na scaffold6_1_size85213-refined unplaced-scaffold na na JJRB01000115.1 = NZ_JJRB01000115.1 Primary Assembly 84662 na scaffold11_1_size72271-refined unplaced-scaffold na na JJRB01000116.1 = NZ_JJRB01000116.1 Primary Assembly 72271 na scaffold44_1_size32305-refined unplaced-scaffold na na JJRB01000117.1 = NZ_JJRB01000117.1 Primary Assembly 32305 na scaffold86_1_size13903-refined unplaced-scaffold na na JJRB01000118.1 = NZ_JJRB01000118.1 Primary Assembly 13823 na scaffold2_1_size129004-refined unplaced-scaffold na na JJRB01000119.1 = NZ_JJRB01000119.1 Primary Assembly 128806 na scaffold133_1_size1740-refined unplaced-scaffold na na JJRB01000120.1 = NZ_JJRB01000120.1 Primary Assembly 1740 na scaffold32_1_size42106-refined unplaced-scaffold na na JJRB01000121.1 = NZ_JJRB01000121.1 Primary Assembly 42106 na scaffold64_1_size21760-refined unplaced-scaffold na na JJRB01000122.1 = NZ_JJRB01000122.1 Primary Assembly 21662 na scaffold73_1_size17900-refined unplaced-scaffold na na JJRB01000123.1 = NZ_JJRB01000123.1 Primary Assembly 17900 na scaffold43_1_size66410-refined unplaced-scaffold na na JJRB01000124.1 = NZ_JJRB01000124.1 Primary Assembly 66295 na scaffold47_1_size30605-refined unplaced-scaffold na na JJRB01000125.1 = NZ_JJRB01000125.1 Primary Assembly 30605 na scaffold63_1_size21902-refined unplaced-scaffold na na JJRB01000126.1 = NZ_JJRB01000126.1 Primary Assembly 21899 na scaffold94_1_size10488-refined unplaced-scaffold na na JJRB01000127.1 = NZ_JJRB01000127.1 Primary Assembly 10412 na scaffold37_1_size36426-refined unplaced-scaffold na na JJRB01000128.1 = NZ_JJRB01000128.1 Primary Assembly 36311 na scaffold30_1_size42746-refined unplaced-scaffold na na JJRB01000129.1 = NZ_JJRB01000129.1 Primary Assembly 42746 na scaffold97_1_size8675-refined unplaced-scaffold na na JJRB01000130.1 = NZ_JJRB01000130.1 Primary Assembly 8675 na scaffold130_1_size2091-refined unplaced-scaffold na na JJRB01000131.1 = NZ_JJRB01000131.1 Primary Assembly 2091 na scaffold139_1_size833-refined unplaced-scaffold na na JJRB01000132.1 = NZ_JJRB01000132.1 Primary Assembly 833 na scaffold85_1_size13931-refined unplaced-scaffold na na JJRB01000133.1 = NZ_JJRB01000133.1 Primary Assembly 13933 na scaffold53_1_size26563-refined unplaced-scaffold na na JJRB01000134.1 = NZ_JJRB01000134.1 Primary Assembly 26563 na scaffold122_1_size3904-refined unplaced-scaffold na na JJRB01000135.1 = NZ_JJRB01000135.1 Primary Assembly 3796 na scaffold19_1_size51395-refined unplaced-scaffold na na JJRB01000136.1 = NZ_JJRB01000136.1 Primary Assembly 51295 na scaffold21_1_size48884-refined unplaced-scaffold na na JJRB01000137.1 = NZ_JJRB01000137.1 Primary Assembly 48854 na scaffold51_1_size27008-refined unplaced-scaffold na na JJRB01000138.1 = NZ_JJRB01000138.1 Primary Assembly 26665 na scaffold20_1_size49743-refined unplaced-scaffold na na JJRB01000139.1 = NZ_JJRB01000139.1 Primary Assembly 49449 na scaffold24_1_size93634-refined unplaced-scaffold na na JJRB01000140.1 = NZ_JJRB01000140.1 Primary Assembly 93536 na scaffold46_1_size41820-refined unplaced-scaffold na na JJRB01000141.1 = NZ_JJRB01000141.1 Primary Assembly 41819 na scaffold26_1_size44729-refined unplaced-scaffold na na JJRB01000142.1 = NZ_JJRB01000142.1 Primary Assembly 44701 na