# Assembly name: ASM127006v2 # Organism name: Limnohabitans planktonicus II-D5 (b-proteobacteria) # Infraspecific name: strain=II-D5 # Taxid: 1293045 # BioSample: SAMN03801504 # BioProject: PRJNA189227 # Submitter: Biology Centre of ASCR, Institute of Hydrobiology # Date: 2018-04-29 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: LFYT02 # Assembly method: SPAdes v. 2016 # Expected final version: no # Genome coverage: 60x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_001270065.2 # RefSeq assembly accession: GCF_001270065.2 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001270085.2 GCF_001270085.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name LimC-II-D5-C1 unplaced-scaffold na na LFYT02000001.1 = NZ_LFYT02000001.1 Primary Assembly 417865 na LimC-II-D5-C2 unplaced-scaffold na na LFYT02000002.1 = NZ_LFYT02000002.1 Primary Assembly 317338 na LimC-II-D5-C3 unplaced-scaffold na na LFYT02000003.1 = NZ_LFYT02000003.1 Primary Assembly 304860 na LimC-II-D5-C4 unplaced-scaffold na na LFYT02000004.1 = NZ_LFYT02000004.1 Primary Assembly 293040 na LimC-II-D5-C5 unplaced-scaffold na na LFYT02000005.1 = NZ_LFYT02000005.1 Primary Assembly 276190 na LimC-II-D5-C6 unplaced-scaffold na na LFYT02000006.1 = NZ_LFYT02000006.1 Primary Assembly 195530 na LimC-II-D5-C7 unplaced-scaffold na na LFYT02000007.1 = NZ_LFYT02000007.1 Primary Assembly 149391 na LimC-II-D5-C8 unplaced-scaffold na na LFYT02000008.1 = NZ_LFYT02000008.1 Primary Assembly 148030 na LimC-II-D5-C9 unplaced-scaffold na na LFYT02000009.1 = NZ_LFYT02000009.1 Primary Assembly 145067 na LimC-II-D5-C10 unplaced-scaffold na na LFYT02000010.1 = NZ_LFYT02000010.1 Primary Assembly 120217 na LimC-II-D5-C11 unplaced-scaffold na na LFYT02000011.1 = NZ_LFYT02000011.1 Primary Assembly 115128 na LimC-II-D5-C12 unplaced-scaffold na na LFYT02000012.1 = NZ_LFYT02000012.1 Primary Assembly 112592 na LimC-II-D5-C13 unplaced-scaffold na na LFYT02000013.1 = NZ_LFYT02000013.1 Primary Assembly 107987 na LimC-II-D5-C14 unplaced-scaffold na na LFYT02000014.1 = NZ_LFYT02000014.1 Primary Assembly 103818 na LimC-II-D5-C15 unplaced-scaffold na na LFYT02000015.1 = NZ_LFYT02000015.1 Primary Assembly 99930 na LimC-II-D5-C16 unplaced-scaffold na na LFYT02000016.1 = NZ_LFYT02000016.1 Primary Assembly 97162 na LimC-II-D5-C17 unplaced-scaffold na na LFYT02000017.1 = NZ_LFYT02000017.1 Primary Assembly 92277 na LimC-II-D5-C18 unplaced-scaffold na na LFYT02000018.1 = NZ_LFYT02000018.1 Primary Assembly 87325 na LimC-II-D5-C19 unplaced-scaffold na na LFYT02000019.1 = NZ_LFYT02000019.1 Primary Assembly 83341 na LimC-II-D5-C20 unplaced-scaffold na na LFYT02000020.1 = NZ_LFYT02000020.1 Primary Assembly 82594 na LimC-II-D5-C21 unplaced-scaffold na na LFYT02000021.1 = NZ_LFYT02000021.1 Primary Assembly 80925 na LimC-II-D5-C22 unplaced-scaffold na na LFYT02000022.1 = NZ_LFYT02000022.1 Primary Assembly 80173 na LimC-II-D5-C23 unplaced-scaffold na na LFYT02000023.1 = NZ_LFYT02000023.1 Primary Assembly 72923 na LimC-II-D5-C24 unplaced-scaffold na na LFYT02000024.1 = NZ_LFYT02000024.1 Primary Assembly 71725 na LimC-II-D5-C25 unplaced-scaffold na na LFYT02000025.1 = NZ_LFYT02000025.1 Primary Assembly 65240 na LimC-II-D5-C26 unplaced-scaffold na na LFYT02000026.1 = NZ_LFYT02000026.1 Primary Assembly 65058 na LimC-II-D5-C27 unplaced-scaffold na na LFYT02000027.1 = NZ_LFYT02000027.1 Primary Assembly 63117 na LimC-II-D5-C28 unplaced-scaffold na na LFYT02000028.1 = NZ_LFYT02000028.1 Primary Assembly 62889 na LimC-II-D5-C29 unplaced-scaffold na na LFYT02000029.1 = NZ_LFYT02000029.1 Primary Assembly 55168 na LimC-II-D5-C30 unplaced-scaffold na na LFYT02000030.1 = NZ_LFYT02000030.1 Primary Assembly 52516 na LimC-II-D5-C31 unplaced-scaffold na na LFYT02000031.1 = NZ_LFYT02000031.1 Primary Assembly 49291 na LimC-II-D5-C32 unplaced-scaffold na na LFYT02000032.1 = NZ_LFYT02000032.1 Primary Assembly 48354 na LimC-II-D5-C33 unplaced-scaffold na na LFYT02000033.1 = NZ_LFYT02000033.1 Primary Assembly 42354 na LimC-II-D5-C34 unplaced-scaffold na na LFYT02000034.1 = NZ_LFYT02000034.1 Primary Assembly 39416 na LimC-II-D5-C35 unplaced-scaffold na na LFYT02000035.1 = NZ_LFYT02000035.1 Primary Assembly 36327 na LimC-II-D5-C36 unplaced-scaffold na na LFYT02000036.1 = NZ_LFYT02000036.1 Primary Assembly 35710 na LimC-II-D5-C37 unplaced-scaffold na na LFYT02000037.1 = NZ_LFYT02000037.1 Primary Assembly 35212 na LimC-II-D5-C38 unplaced-scaffold na na LFYT02000038.1 = NZ_LFYT02000038.1 Primary Assembly 34964 na LimC-II-D5-C39 unplaced-scaffold na na LFYT02000039.1 = NZ_LFYT02000039.1 Primary Assembly 34734 na LimC-II-D5-C40 unplaced-scaffold na na LFYT02000040.1 = NZ_LFYT02000040.1 Primary Assembly 33202 na LimC-II-D5-C41 unplaced-scaffold na na LFYT02000041.1 = NZ_LFYT02000041.1 Primary Assembly 30597 na LimC-II-D5-C42 unplaced-scaffold na na LFYT02000042.1 = NZ_LFYT02000042.1 Primary Assembly 26993 na LimC-II-D5-C43 unplaced-scaffold na na LFYT02000043.1 = NZ_LFYT02000043.1 Primary Assembly 26008 na LimC-II-D5-C44 unplaced-scaffold na na LFYT02000044.1 = NZ_LFYT02000044.1 Primary Assembly 25170 na LimC-II-D5-C45 unplaced-scaffold na na LFYT02000045.1 = NZ_LFYT02000045.1 Primary Assembly 24371 na LimC-II-D5-C46 unplaced-scaffold na na LFYT02000046.1 = NZ_LFYT02000046.1 Primary Assembly 23315 na LimC-II-D5-C47 unplaced-scaffold na na LFYT02000047.1 = NZ_LFYT02000047.1 Primary Assembly 20431 na LimC-II-D5-C48 unplaced-scaffold na na LFYT02000048.1 = NZ_LFYT02000048.1 Primary Assembly 19290 na LimC-II-D5-C49 unplaced-scaffold na na LFYT02000049.1 = NZ_LFYT02000049.1 Primary Assembly 19150 na LimC-II-D5-C50 unplaced-scaffold na na LFYT02000050.1 = NZ_LFYT02000050.1 Primary Assembly 18986 na LimC-II-D5-C51 unplaced-scaffold na na LFYT02000051.1 = NZ_LFYT02000051.1 Primary Assembly 18436 na LimC-II-D5-C52 unplaced-scaffold na na LFYT02000052.1 = NZ_LFYT02000052.1 Primary Assembly 13986 na LimC-II-D5-C53 unplaced-scaffold na na LFYT02000053.1 = NZ_LFYT02000053.1 Primary Assembly 12874 na LimC-II-D5-C54 unplaced-scaffold na na LFYT02000054.1 = NZ_LFYT02000054.1 Primary Assembly 9729 na LimC-II-D5-C55 unplaced-scaffold na na LFYT02000055.1 = NZ_LFYT02000055.1 Primary Assembly 9463 na LimC-II-D5-C56 unplaced-scaffold na na LFYT02000056.1 = NZ_LFYT02000056.1 Primary Assembly 9348 na LimC-II-D5-C57 unplaced-scaffold na na LFYT02000057.1 = NZ_LFYT02000057.1 Primary Assembly 8504 na LimC-II-D5-C58 unplaced-scaffold na na LFYT02000058.1 = NZ_LFYT02000058.1 Primary Assembly 8277 na LimC-II-D5-C59 unplaced-scaffold na na LFYT02000059.1 = NZ_LFYT02000059.1 Primary Assembly 8088 na LimC-II-D5-C60 unplaced-scaffold na na LFYT02000060.1 = NZ_LFYT02000060.1 Primary Assembly 7448 na LimC-II-D5-C61 unplaced-scaffold na na LFYT02000061.1 = NZ_LFYT02000061.1 Primary Assembly 5204 na LimC-II-D5-C62 unplaced-scaffold na na LFYT02000062.1 = NZ_LFYT02000062.1 Primary Assembly 5027 na LimC-II-D5-C63 unplaced-scaffold na na LFYT02000063.1 = NZ_LFYT02000063.1 Primary Assembly 4682 na LimC-II-D5-C64 unplaced-scaffold na na LFYT02000064.1 = NZ_LFYT02000064.1 Primary Assembly 4124 na LimC-II-D5-C65 unplaced-scaffold na na LFYT02000065.1 = NZ_LFYT02000065.1 Primary Assembly 3455 na LimC-II-D5-C66 unplaced-scaffold na na LFYT02000066.1 = NZ_LFYT02000066.1 Primary Assembly 3271 na LimC-II-D5-C67 unplaced-scaffold na na LFYT02000067.1 = NZ_LFYT02000067.1 Primary Assembly 3246 na LimC-II-D5-C68 unplaced-scaffold na na LFYT02000068.1 = NZ_LFYT02000068.1 Primary Assembly 3019 na LimC-II-D5-C69 unplaced-scaffold na na LFYT02000069.1 = NZ_LFYT02000069.1 Primary Assembly 2421 na LimC-II-D5-C70 unplaced-scaffold na na LFYT02000070.1 = NZ_LFYT02000070.1 Primary Assembly 2400 na LimC-II-D5-C71 unplaced-scaffold na na LFYT02000071.1 = NZ_LFYT02000071.1 Primary Assembly 2188 na LimC-II-D5-C72 unplaced-scaffold na na LFYT02000072.1 = NZ_LFYT02000072.1 Primary Assembly 2187 na LimC-II-D5-C73 unplaced-scaffold na na LFYT02000073.1 = NZ_LFYT02000073.1 Primary Assembly 2136 na LimC-II-D5-C74 unplaced-scaffold na na LFYT02000074.1 = NZ_LFYT02000074.1 Primary Assembly 2050 na LimC-II-D5-C75 unplaced-scaffold na na LFYT02000075.1 = NZ_LFYT02000075.1 Primary Assembly 1917 na LimC-II-D5-C76 unplaced-scaffold na na LFYT02000076.1 = NZ_LFYT02000076.1 Primary Assembly 1884 na LimC-II-D5-C77 unplaced-scaffold na na LFYT02000077.1 = NZ_LFYT02000077.1 Primary Assembly 1880 na LimC-II-D5-C78 unplaced-scaffold na na LFYT02000078.1 = NZ_LFYT02000078.1 Primary Assembly 1873 na LimC-II-D5-C79 unplaced-scaffold na na LFYT02000079.1 = NZ_LFYT02000079.1 Primary Assembly 1772 na LimC-II-D5-C80 unplaced-scaffold na na LFYT02000080.1 = NZ_LFYT02000080.1 Primary Assembly 1678 na LimC-II-D5-C81 unplaced-scaffold na na LFYT02000081.1 = NZ_LFYT02000081.1 Primary Assembly 1677 na LimC-II-D5-C82 unplaced-scaffold na na LFYT02000082.1 = NZ_LFYT02000082.1 Primary Assembly 1670 na LimC-II-D5-C83 unplaced-scaffold na na LFYT02000083.1 = NZ_LFYT02000083.1 Primary Assembly 1621 na LimC-II-D5-C84 unplaced-scaffold na na LFYT02000084.1 = NZ_LFYT02000084.1 Primary Assembly 1578 na LimC-II-D5-C85 unplaced-scaffold na na LFYT02000085.1 = NZ_LFYT02000085.1 Primary Assembly 1571 na LimC-II-D5-C86 unplaced-scaffold na na LFYT02000086.1 = NZ_LFYT02000086.1 Primary Assembly 1444 na LimC-II-D5-C87 unplaced-scaffold na na LFYT02000087.1 = NZ_LFYT02000087.1 Primary Assembly 1443 na LimC-II-D5-C88 unplaced-scaffold na na LFYT02000088.1 = NZ_LFYT02000088.1 Primary Assembly 1435 na LimC-II-D5-C89 unplaced-scaffold na na LFYT02000089.1 = NZ_LFYT02000089.1 Primary Assembly 1410 na LimC-II-D5-C90 unplaced-scaffold na na LFYT02000090.1 = NZ_LFYT02000090.1 Primary Assembly 1331 na LimC-II-D5-C91 unplaced-scaffold na na LFYT02000091.1 = NZ_LFYT02000091.1 Primary Assembly 1293 na LimC-II-D5-C92 unplaced-scaffold na na LFYT02000092.1 = NZ_LFYT02000092.1 Primary Assembly 1279 na LimC-II-D5-C93 unplaced-scaffold na na LFYT02000093.1 = NZ_LFYT02000093.1 Primary Assembly 1247 na LimC-II-D5-C94 unplaced-scaffold na na LFYT02000094.1 = NZ_LFYT02000094.1 Primary Assembly 1221 na LimC-II-D5-C95 unplaced-scaffold na na LFYT02000095.1 = NZ_LFYT02000095.1 Primary Assembly 1220 na LimC-II-D5-C96 unplaced-scaffold na na LFYT02000096.1 = NZ_LFYT02000096.1 Primary Assembly 1195 na LimC-II-D5-C97 unplaced-scaffold na na LFYT02000097.1 = NZ_LFYT02000097.1 Primary Assembly 1194 na LimC-II-D5-C98 unplaced-scaffold na na LFYT02000098.1 = NZ_LFYT02000098.1 Primary Assembly 1187 na LimC-II-D5-C99 unplaced-scaffold na na LFYT02000099.1 = NZ_LFYT02000099.1 Primary Assembly 1183 na LimC-II-D5-C100 unplaced-scaffold na na LFYT02000100.1 = NZ_LFYT02000100.1 Primary Assembly 1174 na LimC-II-D5-C101 unplaced-scaffold na na LFYT02000101.1 = NZ_LFYT02000101.1 Primary Assembly 1172 na LimC-II-D5-C102 unplaced-scaffold na na LFYT02000102.1 = NZ_LFYT02000102.1 Primary Assembly 1078 na LimC-II-D5-C103 unplaced-scaffold na na LFYT02000103.1 = NZ_LFYT02000103.1 Primary Assembly 1077 na LimC-II-D5-C104 unplaced-scaffold na na LFYT02000104.1 = NZ_LFYT02000104.1 Primary Assembly 1075 na LimC-II-D5-C105 unplaced-scaffold na na LFYT02000105.1 = NZ_LFYT02000105.1 Primary Assembly 1055 na LimC-II-D5-C106 unplaced-scaffold na na LFYT02000106.1 = NZ_LFYT02000106.1 Primary Assembly 1045 na LimC-II-D5-C107 unplaced-scaffold na na LFYT02000107.1 = NZ_LFYT02000107.1 Primary Assembly 1043 na LimC-II-D5-C108 unplaced-scaffold na na LFYT02000108.1 = NZ_LFYT02000108.1 Primary Assembly 1022 na LimC-II-D5-C109 unplaced-scaffold na na LFYT02000109.1 = NZ_LFYT02000109.1 Primary Assembly 1019 na LimC-II-D5-C110 unplaced-scaffold na na LFYT02000110.1 = NZ_LFYT02000110.1 Primary Assembly 980 na LimC-II-D5-C111 unplaced-scaffold na na LFYT02000111.1 = NZ_LFYT02000111.1 Primary Assembly 968 na LimC-II-D5-C112 unplaced-scaffold na na LFYT02000112.1 = NZ_LFYT02000112.1 Primary Assembly 949 na LimC-II-D5-C113 unplaced-scaffold na na LFYT02000113.1 = NZ_LFYT02000113.1 Primary Assembly 931 na LimC-II-D5-C114 unplaced-scaffold na na LFYT02000114.1 = NZ_LFYT02000114.1 Primary Assembly 891 na LimC-II-D5-C115 unplaced-scaffold na na LFYT02000115.1 = NZ_LFYT02000115.1 Primary Assembly 876 na LimC-II-D5-C116 unplaced-scaffold na na LFYT02000116.1 = NZ_LFYT02000116.1 Primary Assembly 875 na LimC-II-D5-C117 unplaced-scaffold na na LFYT02000117.1 = NZ_LFYT02000117.1 Primary Assembly 874 na LimC-II-D5-C118 unplaced-scaffold na na LFYT02000118.1 = NZ_LFYT02000118.1 Primary Assembly 868 na LimC-II-D5-C119 unplaced-scaffold na na LFYT02000119.1 = NZ_LFYT02000119.1 Primary Assembly 864 na LimC-II-D5-C120 unplaced-scaffold na na LFYT02000120.1 = NZ_LFYT02000120.1 Primary Assembly 860 na LimC-II-D5-C121 unplaced-scaffold na na LFYT02000121.1 = NZ_LFYT02000121.1 Primary Assembly 859 na LimC-II-D5-C122 unplaced-scaffold na na LFYT02000122.1 = NZ_LFYT02000122.1 Primary Assembly 835 na LimC-II-D5-C123 unplaced-scaffold na na LFYT02000123.1 = NZ_LFYT02000123.1 Primary Assembly 835 na LimC-II-D5-C124 unplaced-scaffold na na LFYT02000124.1 = NZ_LFYT02000124.1 Primary Assembly 831 na LimC-II-D5-C125 unplaced-scaffold na na LFYT02000125.1 = NZ_LFYT02000125.1 Primary Assembly 828 na LimC-II-D5-C126 unplaced-scaffold na na LFYT02000126.1 = NZ_LFYT02000126.1 Primary Assembly 784 na LimC-II-D5-C127 unplaced-scaffold na na LFYT02000127.1 = NZ_LFYT02000127.1 Primary Assembly 716 na LimC-II-D5-C128 unplaced-scaffold na na LFYT02000128.1 = NZ_LFYT02000128.1 Primary Assembly 708 na LimC-II-D5-C129 unplaced-scaffold na na LFYT02000129.1 = NZ_LFYT02000129.1 Primary Assembly 705 na LimC-II-D5-C130 unplaced-scaffold na na LFYT02000130.1 = NZ_LFYT02000130.1 Primary Assembly 703 na LimC-II-D5-C131 unplaced-scaffold na na LFYT02000131.1 = NZ_LFYT02000131.1 Primary Assembly 690 na LimC-II-D5-C132 unplaced-scaffold na na LFYT02000132.1 = NZ_LFYT02000132.1 Primary Assembly 689 na LimC-II-D5-C133 unplaced-scaffold na na LFYT02000133.1 = NZ_LFYT02000133.1 Primary Assembly 675 na LimC-II-D5-C134 unplaced-scaffold na na LFYT02000134.1 = NZ_LFYT02000134.1 Primary Assembly 655 na LimC-II-D5-C135 unplaced-scaffold na na LFYT02000135.1 = NZ_LFYT02000135.1 Primary Assembly 646 na LimC-II-D5-C136 unplaced-scaffold na na LFYT02000136.1 = NZ_LFYT02000136.1 Primary Assembly 643 na LimC-II-D5-C137 unplaced-scaffold na na LFYT02000137.1 = NZ_LFYT02000137.1 Primary Assembly 636 na LimC-II-D5-C138 unplaced-scaffold na na LFYT02000138.1 = NZ_LFYT02000138.1 Primary Assembly 625 na LimC-II-D5-C139 unplaced-scaffold na na LFYT02000139.1 = NZ_LFYT02000139.1 Primary Assembly 622 na LimC-II-D5-C140 unplaced-scaffold na na LFYT02000140.1 = NZ_LFYT02000140.1 Primary Assembly 621 na LimC-II-D5-C141 unplaced-scaffold na na LFYT02000141.1 = NZ_LFYT02000141.1 Primary Assembly 615 na LimC-II-D5-C142 unplaced-scaffold na na LFYT02000142.1 = NZ_LFYT02000142.1 Primary Assembly 601 na LimC-II-D5-C143 unplaced-scaffold na na LFYT02000143.1 = NZ_LFYT02000143.1 Primary Assembly 577 na LimC-II-D5-C144 unplaced-scaffold na na LFYT02000144.1 = NZ_LFYT02000144.1 Primary Assembly 555 na LimC-II-D5-C145 unplaced-scaffold na na LFYT02000145.1 = NZ_LFYT02000145.1 Primary Assembly 542 na LimC-II-D5-C146 unplaced-scaffold na na LFYT02000146.1 = NZ_LFYT02000146.1 Primary Assembly 539 na LimC-II-D5-C147 unplaced-scaffold na na LFYT02000147.1 = NZ_LFYT02000147.1 Primary Assembly 527 na LimC-II-D5-C148 unplaced-scaffold na na LFYT02000148.1 = NZ_LFYT02000148.1 Primary Assembly 527 na LimC-II-D5-C149 unplaced-scaffold na na LFYT02000149.1 = NZ_LFYT02000149.1 Primary Assembly 520 na LimC-II-D5-C150 unplaced-scaffold na na LFYT02000150.1 = NZ_LFYT02000150.1 Primary Assembly 518 na LimC-II-D5-C151 unplaced-scaffold na na LFYT02000151.1 = NZ_LFYT02000151.1 Primary Assembly 517 na LimC-II-D5-C152 unplaced-scaffold na na LFYT02000152.1 = NZ_LFYT02000152.1 Primary Assembly 514 na