# Assembly name: ASM143597v1 # Organism name: Secundilactobacillus collinoides DSM 20515 = JCM 1123 (firmicutes) # Infraspecific name: strain=DSM 20515 # Taxid: 1423733 # BioSample: SAMN02369441 # BioProject: PRJNA222257 # Submitter: Shanghai Majorbio # Date: 2015-11-06 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: AYYR01 # Assembly method: SOAPdenovo v. 2 # Expected final version: yes # Genome coverage: 100x # Sequencing technology: Illumina MiSeq; Illumina HiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_001435975.1 # RefSeq assembly accession: GCF_001435975.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001435985.1 GCF_001435985.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1 unplaced-scaffold na na AYYR01000001.1 = NZ_AYYR01000001.1 Primary Assembly 91765 na NODE_2 unplaced-scaffold na na AYYR01000002.1 = NZ_AYYR01000002.1 Primary Assembly 8874 na NODE_3 unplaced-scaffold na na AYYR01000003.1 = NZ_AYYR01000003.1 Primary Assembly 16983 na NODE_4 unplaced-scaffold na na AYYR01000004.1 = NZ_AYYR01000004.1 Primary Assembly 35958 na NODE_5 unplaced-scaffold na na AYYR01000005.1 = NZ_AYYR01000005.1 Primary Assembly 1141 na NODE_6 unplaced-scaffold na na AYYR01000006.1 = NZ_AYYR01000006.1 Primary Assembly 2315 na NODE_7 unplaced-scaffold na na AYYR01000007.1 = NZ_AYYR01000007.1 Primary Assembly 3074 na NODE_8 unplaced-scaffold na na AYYR01000008.1 = NZ_AYYR01000008.1 Primary Assembly 36041 na NODE_9 unplaced-scaffold na na AYYR01000009.1 = NZ_AYYR01000009.1 Primary Assembly 333335 na NODE_10 unplaced-scaffold na na AYYR01000010.1 = NZ_AYYR01000010.1 Primary Assembly 26459 na NODE_11 unplaced-scaffold na na AYYR01000011.1 = NZ_AYYR01000011.1 Primary Assembly 4540 na NODE_13 unplaced-scaffold na na AYYR01000012.1 = NZ_AYYR01000012.1 Primary Assembly 6565 na NODE_14 unplaced-scaffold na na AYYR01000013.1 = NZ_AYYR01000013.1 Primary Assembly 330170 na NODE_15 unplaced-scaffold na na AYYR01000014.1 = NZ_AYYR01000014.1 Primary Assembly 83123 na NODE_16 unplaced-scaffold na na AYYR01000015.1 = NZ_AYYR01000015.1 Primary Assembly 35952 na NODE_17 unplaced-scaffold na na AYYR01000016.1 = NZ_AYYR01000016.1 Primary Assembly 1087 na NODE_18 unplaced-scaffold na na AYYR01000017.1 = NZ_AYYR01000017.1 Primary Assembly 2175 na NODE_19 unplaced-scaffold na na AYYR01000018.1 = NZ_AYYR01000018.1 Primary Assembly 1556 na NODE_20 unplaced-scaffold na na AYYR01000019.1 = NZ_AYYR01000019.1 Primary Assembly 44428 na NODE_22 unplaced-scaffold na na AYYR01000020.1 = NZ_AYYR01000020.1 Primary Assembly 20866 na NODE_23 unplaced-scaffold na na AYYR01000021.1 = NZ_AYYR01000021.1 Primary Assembly 29906 na NODE_24 unplaced-scaffold na na AYYR01000022.1 = NZ_AYYR01000022.1 Primary Assembly 58256 na NODE_25 unplaced-scaffold na na AYYR01000023.1 = NZ_AYYR01000023.1 Primary Assembly 110605 na NODE_26 unplaced-scaffold na na AYYR01000024.1 = NZ_AYYR01000024.1 Primary Assembly 5863 na NODE_27 unplaced-scaffold na na AYYR01000025.1 = NZ_AYYR01000025.1 Primary Assembly 13038 na NODE_28 unplaced-scaffold na na AYYR01000026.1 = NZ_AYYR01000026.1 Primary Assembly 1602 na NODE_29 unplaced-scaffold na na AYYR01000027.1 = NZ_AYYR01000027.1 Primary Assembly 12577 na NODE_30 unplaced-scaffold na na AYYR01000028.1 = NZ_AYYR01000028.1 Primary Assembly 917 na NODE_31 unplaced-scaffold na na AYYR01000029.1 = NZ_AYYR01000029.1 Primary Assembly 100101 na NODE_32 unplaced-scaffold na na AYYR01000030.1 = NZ_AYYR01000030.1 Primary Assembly 49070 na NODE_33 unplaced-scaffold na na AYYR01000031.1 = NZ_AYYR01000031.1 Primary Assembly 2097 na NODE_34 unplaced-scaffold na na AYYR01000032.1 = NZ_AYYR01000032.1 Primary Assembly 62703 na NODE_35 unplaced-scaffold na na AYYR01000033.1 = NZ_AYYR01000033.1 Primary Assembly 16679 na NODE_36 unplaced-scaffold na na AYYR01000034.1 = NZ_AYYR01000034.1 Primary Assembly 1885 na NODE_37 unplaced-scaffold na na AYYR01000035.1 = NZ_AYYR01000035.1 Primary Assembly 295 na NODE_39 unplaced-scaffold na na AYYR01000036.1 = NZ_AYYR01000036.1 Primary Assembly 453 na NODE_40 unplaced-scaffold na na AYYR01000037.1 = NZ_AYYR01000037.1 Primary Assembly 3254 na NODE_41 unplaced-scaffold na na AYYR01000038.1 = NZ_AYYR01000038.1 Primary Assembly 770 na NODE_42 unplaced-scaffold na na AYYR01000039.1 = NZ_AYYR01000039.1 Primary Assembly 105581 na NODE_43 unplaced-scaffold na na AYYR01000040.1 = NZ_AYYR01000040.1 Primary Assembly 1766 na NODE_47 unplaced-scaffold na na AYYR01000041.1 = NZ_AYYR01000041.1 Primary Assembly 1693 na NODE_48 unplaced-scaffold na na AYYR01000042.1 = NZ_AYYR01000042.1 Primary Assembly 964 na NODE_49 unplaced-scaffold na na AYYR01000043.1 = NZ_AYYR01000043.1 Primary Assembly 190944 na NODE_51 unplaced-scaffold na na AYYR01000044.1 = NZ_AYYR01000044.1 Primary Assembly 79551 na NODE_53 unplaced-scaffold na na AYYR01000045.1 = NZ_AYYR01000045.1 Primary Assembly 437 na NODE_54 unplaced-scaffold na na AYYR01000046.1 = NZ_AYYR01000046.1 Primary Assembly 10184 na NODE_55 unplaced-scaffold na na AYYR01000047.1 = NZ_AYYR01000047.1 Primary Assembly 13238 na NODE_56 unplaced-scaffold na na AYYR01000048.1 = NZ_AYYR01000048.1 Primary Assembly 10619 na NODE_58 unplaced-scaffold na na AYYR01000049.1 = NZ_AYYR01000049.1 Primary Assembly 598 na NODE_59 unplaced-scaffold na na AYYR01000050.1 = NZ_AYYR01000050.1 Primary Assembly 3117 na NODE_62 unplaced-scaffold na na AYYR01000051.1 = NZ_AYYR01000051.1 Primary Assembly 410 na NODE_64 unplaced-scaffold na na AYYR01000052.1 = NZ_AYYR01000052.1 Primary Assembly 28143 na NODE_65 unplaced-scaffold na na AYYR01000053.1 = NZ_AYYR01000053.1 Primary Assembly 136131 na NODE_66 unplaced-scaffold na na AYYR01000054.1 = NZ_AYYR01000054.1 Primary Assembly 187198 na NODE_67 unplaced-scaffold na na AYYR01000055.1 = NZ_AYYR01000055.1 Primary Assembly 42628 na NODE_68 unplaced-scaffold na na AYYR01000056.1 = NZ_AYYR01000056.1 Primary Assembly 18717 na NODE_69 unplaced-scaffold na na AYYR01000057.1 = NZ_AYYR01000057.1 Primary Assembly 619 na NODE_70 unplaced-scaffold na na AYYR01000058.1 = NZ_AYYR01000058.1 Primary Assembly 306 na NODE_73 unplaced-scaffold na na AYYR01000059.1 = NZ_AYYR01000059.1 Primary Assembly 48184 na NODE_74 unplaced-scaffold na na AYYR01000060.1 = NZ_AYYR01000060.1 Primary Assembly 591 na NODE_75 unplaced-scaffold na na AYYR01000061.1 = NZ_AYYR01000061.1 Primary Assembly 12409 na NODE_78 unplaced-scaffold na na AYYR01000062.1 = NZ_AYYR01000062.1 Primary Assembly 11561 na NODE_79 unplaced-scaffold na na AYYR01000063.1 = NZ_AYYR01000063.1 Primary Assembly 1332 na NODE_82 unplaced-scaffold na na AYYR01000064.1 = NZ_AYYR01000064.1 Primary Assembly 1702 na NODE_84 unplaced-scaffold na na AYYR01000065.1 = NZ_AYYR01000065.1 Primary Assembly 36518 na NODE_85 unplaced-scaffold na na AYYR01000066.1 = NZ_AYYR01000066.1 Primary Assembly 546 na NODE_86 unplaced-scaffold na na AYYR01000067.1 = NZ_AYYR01000067.1 Primary Assembly 103704 na NODE_87 unplaced-scaffold na na AYYR01000068.1 = NZ_AYYR01000068.1 Primary Assembly 234 na NODE_88 unplaced-scaffold na na AYYR01000069.1 = NZ_AYYR01000069.1 Primary Assembly 459 na NODE_90 unplaced-scaffold na na AYYR01000070.1 = NZ_AYYR01000070.1 Primary Assembly 15880 na NODE_91 unplaced-scaffold na na AYYR01000071.1 = NZ_AYYR01000071.1 Primary Assembly 25603 na NODE_92 unplaced-scaffold na na AYYR01000072.1 = NZ_AYYR01000072.1 Primary Assembly 6337 na NODE_93 unplaced-scaffold na na AYYR01000073.1 = NZ_AYYR01000073.1 Primary Assembly 3140 na NODE_94 unplaced-scaffold na na AYYR01000074.1 = NZ_AYYR01000074.1 Primary Assembly 163346 na NODE_99 unplaced-scaffold na na AYYR01000075.1 = NZ_AYYR01000075.1 Primary Assembly 16736 na NODE_102 unplaced-scaffold na na AYYR01000076.1 = NZ_AYYR01000076.1 Primary Assembly 250 na NODE_103 unplaced-scaffold na na AYYR01000077.1 = NZ_AYYR01000077.1 Primary Assembly 324 na NODE_104 unplaced-scaffold na na AYYR01000078.1 = NZ_AYYR01000078.1 Primary Assembly 28881 na NODE_107 unplaced-scaffold na na AYYR01000079.1 = NZ_AYYR01000079.1 Primary Assembly 1202 na NODE_108 unplaced-scaffold na na AYYR01000080.1 = NZ_AYYR01000080.1 Primary Assembly 231 na NODE_109 unplaced-scaffold na na AYYR01000081.1 = NZ_AYYR01000081.1 Primary Assembly 6201 na NODE_110 unplaced-scaffold na na AYYR01000082.1 = NZ_AYYR01000082.1 Primary Assembly 67942 na NODE_111 unplaced-scaffold na na AYYR01000083.1 = NZ_AYYR01000083.1 Primary Assembly 42777 na NODE_113 unplaced-scaffold na na AYYR01000084.1 = NZ_AYYR01000084.1 Primary Assembly 4472 na NODE_114 unplaced-scaffold na na AYYR01000085.1 = NZ_AYYR01000085.1 Primary Assembly 451 na NODE_118 unplaced-scaffold na na AYYR01000086.1 = NZ_AYYR01000086.1 Primary Assembly 343 na NODE_119 unplaced-scaffold na na AYYR01000087.1 = NZ_AYYR01000087.1 Primary Assembly 411 na NODE_124 unplaced-scaffold na na AYYR01000088.1 = NZ_AYYR01000088.1 Primary Assembly 569 na NODE_125 unplaced-scaffold na na AYYR01000089.1 = NZ_AYYR01000089.1 Primary Assembly 9617 na NODE_126 unplaced-scaffold na na AYYR01000090.1 = NZ_AYYR01000090.1 Primary Assembly 284 na NODE_127 unplaced-scaffold na na AYYR01000091.1 = NZ_AYYR01000091.1 Primary Assembly 1689 na NODE_128 unplaced-scaffold na na AYYR01000092.1 = NZ_AYYR01000092.1 Primary Assembly 1171 na NODE_133 unplaced-scaffold na na AYYR01000093.1 = NZ_AYYR01000093.1 Primary Assembly 12266 na NODE_136 unplaced-scaffold na na AYYR01000094.1 = NZ_AYYR01000094.1 Primary Assembly 48363 na NODE_140 unplaced-scaffold na na AYYR01000095.1 = NZ_AYYR01000095.1 Primary Assembly 2461 na NODE_141 unplaced-scaffold na na AYYR01000096.1 = NZ_AYYR01000096.1 Primary Assembly 355 na NODE_144 unplaced-scaffold na na AYYR01000097.1 = NZ_AYYR01000097.1 Primary Assembly 4149 na NODE_145 unplaced-scaffold na na AYYR01000098.1 = NZ_AYYR01000098.1 Primary Assembly 1878 na NODE_146 unplaced-scaffold na na AYYR01000099.1 = NZ_AYYR01000099.1 Primary Assembly 320 na NODE_148 unplaced-scaffold na na AYYR01000100.1 = NZ_AYYR01000100.1 Primary Assembly 2567 na NODE_149 unplaced-scaffold na na AYYR01000101.1 = NZ_AYYR01000101.1 Primary Assembly 1562 na NODE_152 unplaced-scaffold na na AYYR01000102.1 = NZ_AYYR01000102.1 Primary Assembly 338 na NODE_153 unplaced-scaffold na na AYYR01000103.1 = NZ_AYYR01000103.1 Primary Assembly 1051 na NODE_160 unplaced-scaffold na na AYYR01000104.1 = NZ_AYYR01000104.1 Primary Assembly 5050 na NODE_162 unplaced-scaffold na na AYYR01000105.1 = NZ_AYYR01000105.1 Primary Assembly 474 na NODE_167 unplaced-scaffold na na AYYR01000106.1 = NZ_AYYR01000106.1 Primary Assembly 90564 na NODE_170 unplaced-scaffold na na AYYR01000107.1 = NZ_AYYR01000107.1 Primary Assembly 485 na NODE_171 unplaced-scaffold na na AYYR01000108.1 = NZ_AYYR01000108.1 Primary Assembly 348 na NODE_172 unplaced-scaffold na na AYYR01000109.1 = NZ_AYYR01000109.1 Primary Assembly 437 na NODE_179 unplaced-scaffold na na AYYR01000110.1 = NZ_AYYR01000110.1 Primary Assembly 355 na NODE_181 unplaced-scaffold na na AYYR01000111.1 = NZ_AYYR01000111.1 Primary Assembly 318 na NODE_182 unplaced-scaffold na na AYYR01000112.1 = NZ_AYYR01000112.1 Primary Assembly 65681 na NODE_185 unplaced-scaffold na na AYYR01000113.1 = NZ_AYYR01000113.1 Primary Assembly 1085 na NODE_187 unplaced-scaffold na na AYYR01000114.1 = NZ_AYYR01000114.1 Primary Assembly 557 na NODE_198 unplaced-scaffold na na AYYR01000115.1 = NZ_AYYR01000115.1 Primary Assembly 551 na NODE_199 unplaced-scaffold na na AYYR01000116.1 = NZ_AYYR01000116.1 Primary Assembly 16804 na NODE_202 unplaced-scaffold na na AYYR01000117.1 = NZ_AYYR01000117.1 Primary Assembly 79536 na NODE_203 unplaced-scaffold na na AYYR01000118.1 = NZ_AYYR01000118.1 Primary Assembly 7883 na NODE_204 unplaced-scaffold na na AYYR01000119.1 = NZ_AYYR01000119.1 Primary Assembly 284 na NODE_214 unplaced-scaffold na na AYYR01000120.1 = NZ_AYYR01000120.1 Primary Assembly 4031 na NODE_226 unplaced-scaffold na na AYYR01000121.1 = NZ_AYYR01000121.1 Primary Assembly 1912 na NODE_229 unplaced-scaffold na na AYYR01000122.1 = NZ_AYYR01000122.1 Primary Assembly 7303 na NODE_241 unplaced-scaffold na na AYYR01000123.1 = NZ_AYYR01000123.1 Primary Assembly 1053 na NODE_242 unplaced-scaffold na na AYYR01000124.1 = NZ_AYYR01000124.1 Primary Assembly 42791 na NODE_252 unplaced-scaffold na na AYYR01000125.1 = NZ_AYYR01000125.1 Primary Assembly 42006 na NODE_257 unplaced-scaffold na na AYYR01000126.1 = NZ_AYYR01000126.1 Primary Assembly 2253 na NODE_259 unplaced-scaffold na na AYYR01000127.1 = NZ_AYYR01000127.1 Primary Assembly 59207 na NODE_275 unplaced-scaffold na na AYYR01000128.1 = NZ_AYYR01000128.1 Primary Assembly 235 na NODE_278 unplaced-scaffold na na AYYR01000129.1 = NZ_AYYR01000129.1 Primary Assembly 88924 na NODE_287 unplaced-scaffold na na AYYR01000130.1 = NZ_AYYR01000130.1 Primary Assembly 16334 na