hub GCF_001499615.1 genome assembly
shortLabel Acetobacter senegalensis (108B 2016)
longLabel Acetobacter senegalensis (108B 2016)/Acetobacter senegalensis/GCF_001499615.1_Acetobacter_senegalensis_108B genome assembly
useOneFile on
email genome-www@soe.ucsc.edu
descriptionUrl html/GCF_001499615.1_Acetobacter_senegalensis_108B.description.html

genome GCF_001499615.1
taxId 446692
groups groups.txt
description Acetobacter senegalensis (108B 2016)
twoBitPath GCF_001499615.1.2bit
twoBitBptUrl GCF_001499615.1.2bit.bpt
chromSizes GCF_001499615.1.chrom.sizes.txt
chromAliasBb GCF_001499615.1.chromAlias.bb
organism Acetobacter_senegalensis_108B Jan. 2016
defaultPos NZ_LN606600.1:1296627-1306627
scientificName Acetobacter senegalensis
htmlPath html/GCF_001499615.1_Acetobacter_senegalensis_108B.description.html
blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/001/499/615/GCF_001499615.1
transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/001/499/615/GCF_001499615.1
isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/001/499/615/GCF_001499615.1

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longLabel Assembly
shortLabel Assembly
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bigDataUrl bbi/GCF_001499615.1_Acetobacter_senegalensis_108B.assembly.bb
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html html/GCF_001499615.1_Acetobacter_senegalensis_108B.assembly
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searchTrix ixIxx/GCF_001499615.1_Acetobacter_senegalensis_108B.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

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shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
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type bigBed 4 +
bigDataUrl bbi/GCF_001499615.1_Acetobacter_senegalensis_108B.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
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bigDataUrl bbi/GCF_001499615.1_Acetobacter_senegalensis_108B.gc5Base.bw
html html/GCF_001499615.1_Acetobacter_senegalensis_108B.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
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type bigBed 12
group map
html html/GCF_001499615.1_Acetobacter_senegalensis_108B.tanDups

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
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    type bigBed 12

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
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type bigBed 4 +
bigDataUrl bbi/GCF_001499615.1_Acetobacter_senegalensis_108B.simpleRepeat.bb
html html/GCF_001499615.1_Acetobacter_senegalensis_108B.simpleRepeat

track ncbiGene
longLabel NCBI gene predictions
shortLabel NCBI Genes
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altColor 150,80,0
colorByStrand 0,80,150 150,80,0
bigDataUrl bbi/GCF_001499615.1_Acetobacter_senegalensis_108B.ncbiGene.bb
type bigGenePred
urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$"
html html/GCF_001499615.1_Acetobacter_senegalensis_108B.ncbiGene
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searchTrix ixIxx/GCF_001499615.1_Acetobacter_senegalensis_108B.ncbiGene.ix
urlLabel Entrez gene:
labelFields name,geneName,geneName2
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group genes

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shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
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type bigBed 4 +
html html/GCF_001499615.1_Acetobacter_senegalensis_108B.cpgIslands

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    longLabel CpG Islands (Islands < 300 Bases are Light Green)
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    priority 1
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    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
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track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
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type bigBed 3
bigDataUrl bbi/GCF_001499615.1_Acetobacter_senegalensis_108B.windowMasker.bb
html html/GCF_001499615.1_Acetobacter_senegalensis_108B.windowMasker