# Assembly name: ASM258340v1 # Organism name: Secundilactobacillus silagincola (firmicutes) # Infraspecific name: strain=IWT5 # Taxid: 1714681 # BioSample: SAMD00042399 # BioProject: PRJDB4275 # Submitter: NARO Institute of Livestock and Grassland Science # Date: 2017-10-03 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: BCMJ01 # Assembly method: Platanus v. 1.2.4 # Genome coverage: 130X # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_002583405.1 # RefSeq assembly accession: GCF_002583405.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_002583415.1 GCF_002583415.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name BCMJ01000001.1 unplaced-scaffold na na BCMJ01000001.1 = NZ_BCMJ01000001.1 Primary Assembly 434694 na BCMJ01000002.1 unplaced-scaffold na na BCMJ01000002.1 = NZ_BCMJ01000002.1 Primary Assembly 425877 na BCMJ01000003.1 unplaced-scaffold na na BCMJ01000003.1 = NZ_BCMJ01000003.1 Primary Assembly 403600 na BCMJ01000004.1 unplaced-scaffold na na BCMJ01000004.1 = NZ_BCMJ01000004.1 Primary Assembly 287094 na BCMJ01000005.1 unplaced-scaffold na na BCMJ01000005.1 = NZ_BCMJ01000005.1 Primary Assembly 218243 na BCMJ01000006.1 unplaced-scaffold na na BCMJ01000006.1 = NZ_BCMJ01000006.1 Primary Assembly 140573 na BCMJ01000007.1 unplaced-scaffold na na BCMJ01000007.1 = NZ_BCMJ01000007.1 Primary Assembly 119390 na BCMJ01000008.1 unplaced-scaffold na na BCMJ01000008.1 = NZ_BCMJ01000008.1 Primary Assembly 113225 na BCMJ01000009.1 unplaced-scaffold na na BCMJ01000009.1 = NZ_BCMJ01000009.1 Primary Assembly 72334 na BCMJ01000010.1 unplaced-scaffold na na BCMJ01000010.1 = NZ_BCMJ01000010.1 Primary Assembly 68041 na BCMJ01000011.1 unplaced-scaffold na na BCMJ01000011.1 = NZ_BCMJ01000011.1 Primary Assembly 55709 na BCMJ01000012.1 unplaced-scaffold na na BCMJ01000012.1 = NZ_BCMJ01000012.1 Primary Assembly 52016 na BCMJ01000013.1 unplaced-scaffold na na BCMJ01000013.1 = NZ_BCMJ01000013.1 Primary Assembly 51938 na BCMJ01000014.1 unplaced-scaffold na na BCMJ01000014.1 = NZ_BCMJ01000014.1 Primary Assembly 48022 na BCMJ01000015.1 unplaced-scaffold na na BCMJ01000015.1 = NZ_BCMJ01000015.1 Primary Assembly 35282 na BCMJ01000016.1 unplaced-scaffold na na BCMJ01000016.1 = NZ_BCMJ01000016.1 Primary Assembly 30828 na BCMJ01000017.1 unplaced-scaffold na na BCMJ01000017.1 = NZ_BCMJ01000017.1 Primary Assembly 19906 na BCMJ01000018.1 unplaced-scaffold na na BCMJ01000018.1 = NZ_BCMJ01000018.1 Primary Assembly 17041 na BCMJ01000019.1 unplaced-scaffold na na BCMJ01000019.1 = NZ_BCMJ01000019.1 Primary Assembly 2218 na BCMJ01000020.1 unplaced-scaffold na na BCMJ01000020.1 = NZ_BCMJ01000020.1 Primary Assembly 1302 na BCMJ01000021.1 unplaced-scaffold na na BCMJ01000021.1 = NZ_BCMJ01000021.1 Primary Assembly 991 na BCMJ01000022.1 unplaced-scaffold na na BCMJ01000022.1 = NZ_BCMJ01000022.1 Primary Assembly 911 na BCMJ01000023.1 unplaced-scaffold na na BCMJ01000023.1 = NZ_BCMJ01000023.1 Primary Assembly 590 na BCMJ01000024.1 unplaced-scaffold na na BCMJ01000024.1 = NZ_BCMJ01000024.1 Primary Assembly 478 na BCMJ01000025.1 unplaced-scaffold na na BCMJ01000025.1 = NZ_BCMJ01000025.1 Primary Assembly 468 na BCMJ01000026.1 unplaced-scaffold na na BCMJ01000026.1 = NZ_BCMJ01000026.1 Primary Assembly 466 na BCMJ01000027.1 unplaced-scaffold na na BCMJ01000027.1 = NZ_BCMJ01000027.1 Primary Assembly 416 na BCMJ01000028.1 unplaced-scaffold na na BCMJ01000028.1 = NZ_BCMJ01000028.1 Primary Assembly 404 na BCMJ01000029.1 unplaced-scaffold na na BCMJ01000029.1 = NZ_BCMJ01000029.1 Primary Assembly 404 na BCMJ01000030.1 unplaced-scaffold na na BCMJ01000030.1 = NZ_BCMJ01000030.1 Primary Assembly 389 na BCMJ01000031.1 unplaced-scaffold na na BCMJ01000031.1 = NZ_BCMJ01000031.1 Primary Assembly 387 na BCMJ01000032.1 unplaced-scaffold na na BCMJ01000032.1 = NZ_BCMJ01000032.1 Primary Assembly 373 na BCMJ01000033.1 unplaced-scaffold na na BCMJ01000033.1 = NZ_BCMJ01000033.1 Primary Assembly 373 na BCMJ01000034.1 unplaced-scaffold na na BCMJ01000034.1 = NZ_BCMJ01000034.1 Primary Assembly 342 na BCMJ01000035.1 unplaced-scaffold na na BCMJ01000035.1 = NZ_BCMJ01000035.1 Primary Assembly 336 na BCMJ01000036.1 unplaced-scaffold na na BCMJ01000036.1 = NZ_BCMJ01000036.1 Primary Assembly 329 na BCMJ01000037.1 unplaced-scaffold na na BCMJ01000037.1 = NZ_BCMJ01000037.1 Primary Assembly 324 na BCMJ01000038.1 unplaced-scaffold na na BCMJ01000038.1 = NZ_BCMJ01000038.1 Primary Assembly 322 na BCMJ01000039.1 unplaced-scaffold na na BCMJ01000039.1 = NZ_BCMJ01000039.1 Primary Assembly 320 na BCMJ01000040.1 unplaced-scaffold na na BCMJ01000040.1 = NZ_BCMJ01000040.1 Primary Assembly 308 na BCMJ01000041.1 unplaced-scaffold na na BCMJ01000041.1 = NZ_BCMJ01000041.1 Primary Assembly 296 na BCMJ01000042.1 unplaced-scaffold na na BCMJ01000042.1 = NZ_BCMJ01000042.1 Primary Assembly 293 na BCMJ01000043.1 unplaced-scaffold na na BCMJ01000043.1 = NZ_BCMJ01000043.1 Primary Assembly 293 na BCMJ01000044.1 unplaced-scaffold na na BCMJ01000044.1 = NZ_BCMJ01000044.1 Primary Assembly 293 na BCMJ01000045.1 unplaced-scaffold na na BCMJ01000045.1 = NZ_BCMJ01000045.1 Primary Assembly 292 na BCMJ01000046.1 unplaced-scaffold na na BCMJ01000046.1 = NZ_BCMJ01000046.1 Primary Assembly 289 na BCMJ01000047.1 unplaced-scaffold na na BCMJ01000047.1 = NZ_BCMJ01000047.1 Primary Assembly 289 na BCMJ01000048.1 unplaced-scaffold na na BCMJ01000048.1 = NZ_BCMJ01000048.1 Primary Assembly 282 na BCMJ01000049.1 unplaced-scaffold na na BCMJ01000049.1 = NZ_BCMJ01000049.1 Primary Assembly 282 na BCMJ01000050.1 unplaced-scaffold na na BCMJ01000050.1 = NZ_BCMJ01000050.1 Primary Assembly 281 na BCMJ01000051.1 unplaced-scaffold na na BCMJ01000051.1 = NZ_BCMJ01000051.1 Primary Assembly 280 na BCMJ01000052.1 unplaced-scaffold na na BCMJ01000052.1 = NZ_BCMJ01000052.1 Primary Assembly 278 na BCMJ01000053.1 unplaced-scaffold na na BCMJ01000053.1 = NZ_BCMJ01000053.1 Primary Assembly 277 na BCMJ01000054.1 unplaced-scaffold na na BCMJ01000054.1 = NZ_BCMJ01000054.1 Primary Assembly 275 na BCMJ01000055.1 unplaced-scaffold na na BCMJ01000055.1 = NZ_BCMJ01000055.1 Primary Assembly 269 na BCMJ01000056.1 unplaced-scaffold na na BCMJ01000056.1 = NZ_BCMJ01000056.1 Primary Assembly 268 na BCMJ01000057.1 unplaced-scaffold na na BCMJ01000057.1 = NZ_BCMJ01000057.1 Primary Assembly 258 na BCMJ01000058.1 unplaced-scaffold na na BCMJ01000058.1 = NZ_BCMJ01000058.1 Primary Assembly 257 na BCMJ01000059.1 unplaced-scaffold na na BCMJ01000059.1 = NZ_BCMJ01000059.1 Primary Assembly 256 na BCMJ01000060.1 unplaced-scaffold na na BCMJ01000060.1 = NZ_BCMJ01000060.1 Primary Assembly 252 na BCMJ01000061.1 unplaced-scaffold na na BCMJ01000061.1 = NZ_BCMJ01000061.1 Primary Assembly 248 na BCMJ01000062.1 unplaced-scaffold na na BCMJ01000062.1 = NZ_BCMJ01000062.1 Primary Assembly 245 na BCMJ01000063.1 unplaced-scaffold na na BCMJ01000063.1 = NZ_BCMJ01000063.1 Primary Assembly 245 na BCMJ01000064.1 unplaced-scaffold na na BCMJ01000064.1 = NZ_BCMJ01000064.1 Primary Assembly 241 na BCMJ01000065.1 unplaced-scaffold na na BCMJ01000065.1 = NZ_BCMJ01000065.1 Primary Assembly 241 na BCMJ01000066.1 unplaced-scaffold na na BCMJ01000066.1 = NZ_BCMJ01000066.1 Primary Assembly 239 na BCMJ01000067.1 unplaced-scaffold na na BCMJ01000067.1 = NZ_BCMJ01000067.1 Primary Assembly 238 na BCMJ01000068.1 unplaced-scaffold na na BCMJ01000068.1 = NZ_BCMJ01000068.1 Primary Assembly 238 na BCMJ01000069.1 unplaced-scaffold na na BCMJ01000069.1 = NZ_BCMJ01000069.1 Primary Assembly 237 na BCMJ01000070.1 unplaced-scaffold na na BCMJ01000070.1 = NZ_BCMJ01000070.1 Primary Assembly 234 na BCMJ01000071.1 unplaced-scaffold na na BCMJ01000071.1 = NZ_BCMJ01000071.1 Primary Assembly 233 na BCMJ01000072.1 unplaced-scaffold na na BCMJ01000072.1 = NZ_BCMJ01000072.1 Primary Assembly 230 na BCMJ01000073.1 unplaced-scaffold na na BCMJ01000073.1 = NZ_BCMJ01000073.1 Primary Assembly 225 na BCMJ01000074.1 unplaced-scaffold na na BCMJ01000074.1 = NZ_BCMJ01000074.1 Primary Assembly 225 na BCMJ01000075.1 unplaced-scaffold na na BCMJ01000075.1 = NZ_BCMJ01000075.1 Primary Assembly 224 na BCMJ01000076.1 unplaced-scaffold na na BCMJ01000076.1 = NZ_BCMJ01000076.1 Primary Assembly 223 na BCMJ01000077.1 unplaced-scaffold na na BCMJ01000077.1 = NZ_BCMJ01000077.1 Primary Assembly 220 na BCMJ01000078.1 unplaced-scaffold na na BCMJ01000078.1 = NZ_BCMJ01000078.1 Primary Assembly 216 na BCMJ01000079.1 unplaced-scaffold na na BCMJ01000079.1 = NZ_BCMJ01000079.1 Primary Assembly 215 na BCMJ01000080.1 unplaced-scaffold na na BCMJ01000080.1 = NZ_BCMJ01000080.1 Primary Assembly 215 na BCMJ01000081.1 unplaced-scaffold na na BCMJ01000081.1 = NZ_BCMJ01000081.1 Primary Assembly 212 na BCMJ01000082.1 unplaced-scaffold na na BCMJ01000082.1 = NZ_BCMJ01000082.1 Primary Assembly 207 na BCMJ01000083.1 unplaced-scaffold na na BCMJ01000083.1 = NZ_BCMJ01000083.1 Primary Assembly 207 na BCMJ01000084.1 unplaced-scaffold na na BCMJ01000084.1 = NZ_BCMJ01000084.1 Primary Assembly 206 na BCMJ01000085.1 unplaced-scaffold na na BCMJ01000085.1 = NZ_BCMJ01000085.1 Primary Assembly 203 na BCMJ01000086.1 unplaced-scaffold na na BCMJ01000086.1 = NZ_BCMJ01000086.1 Primary Assembly 202 na