# Assembly name: X_maculatus-5.0-male # Organism name: Xiphophorus maculatus (southern platyfish) # Infraspecific name: strain=JP 163 A # Sex: male # Taxid: 8083 # BioSample: SAMN08025980 # BioProject: PRJNA72525 # Submitter: The Genome Institute, Washington University at St. Louis # Date: 2017-12-07 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: PGSD01 # Assembly method: HGAP4_SMRT_Link v. 5.0.19585 # Genome coverage: 83x # Sequencing technology: PacBio_Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_002775205.2 # RefSeq assembly accession: GCF_002775205.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_002775215.2 GCF_002775215.1 Primary Assembly ## GCF_000075715.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 1 assembled-molecule 1 Chromosome CM008938.1 = NC_036443.1 Primary Assembly 32265191 na 2 assembled-molecule 2 Chromosome CM008939.1 = NC_036444.1 Primary Assembly 31535491 na 3 assembled-molecule 3 Chromosome CM008940.1 = NC_036445.1 Primary Assembly 33395476 na 4 assembled-molecule 4 Chromosome CM008941.1 = NC_036446.1 Primary Assembly 35293739 na 5 assembled-molecule 5 Chromosome CM008942.1 = NC_036447.1 Primary Assembly 33362219 na 6 assembled-molecule 6 Chromosome CM008943.1 = NC_036448.1 Primary Assembly 30192296 na 7 assembled-molecule 7 Chromosome CM008944.1 = NC_036449.1 Primary Assembly 31701063 na 8 assembled-molecule 8 Chromosome CM008945.1 = NC_036450.1 Primary Assembly 27836836 na 9 assembled-molecule 9 Chromosome CM008946.1 = NC_036451.1 Primary Assembly 31544005 na 10 assembled-molecule 10 Chromosome CM008947.1 = NC_036452.1 Primary Assembly 25258764 na 11 assembled-molecule 11 Chromosome CM008948.1 = NC_036453.1 Primary Assembly 32424306 na 12 assembled-molecule 12 Chromosome CM008949.1 = NC_036454.1 Primary Assembly 30270779 na 13 assembled-molecule 13 Chromosome CM008950.1 = NC_036455.1 Primary Assembly 28669031 na 14 assembled-molecule 14 Chromosome CM008951.1 = NC_036456.1 Primary Assembly 27921107 na 15 assembled-molecule 15 Chromosome CM008952.1 = NC_036457.1 Primary Assembly 24466587 na 16 assembled-molecule 16 Chromosome CM008953.1 = NC_036458.1 Primary Assembly 25766145 na 17 assembled-molecule 17 Chromosome CM008954.1 = NC_036459.1 Primary Assembly 20566889 na 18 assembled-molecule 18 Chromosome CM008955.1 = NC_036460.1 Primary Assembly 33421192 na 19 assembled-molecule 19 Chromosome CM008956.1 = NC_036461.1 Primary Assembly 27874734 na 20 assembled-molecule 20 Chromosome CM008957.1 = NC_036462.1 Primary Assembly 32926076 na 21 assembled-molecule 21 Chromosome CM008958.1 = NC_036463.1 Primary Assembly 26619551 na 22 assembled-molecule 22 Chromosome CM008959.1 = NC_036464.1 Primary Assembly 29576354 na 23 assembled-molecule 23 Chromosome CM008960.1 = NC_036465.1 Primary Assembly 32170657 na 24 assembled-molecule 24 Chromosome CM008961.1 = NC_036466.1 Primary Assembly 14922202 na Unplaced_Scaffold_82 unplaced-scaffold na na PGSD01000025.1 = NW_019369752.1 Primary Assembly 183330 na Unplaced_Scaffold_138 unplaced-scaffold na na PGSD01000026.1 = NW_019369751.1 Primary Assembly 269636 na Unplaced_Scaffold_BN223 unplaced-scaffold na na PGSD01000027.1 = NW_019369819.1 Primary Assembly 111326 na Unplaced_Scaffold_BN000196F unplaced-scaffold na na PGSD01000028.1 = NW_019369792.1 Primary Assembly 32055 na Unplaced_Scaffold_BN000164F unplaced-scaffold na na PGSD01000029.1 = NW_019369763.1 Primary Assembly 127659 na Unplaced_Scaffold_BN000177F unplaced-scaffold na na PGSD01000030.1 = NW_019369773.1 Primary Assembly 68106 na Unplaced_Scaffold_BN000176F unplaced-scaffold na na PGSD01000031.1 = NW_019369772.1 Primary Assembly 74223 na Unplaced_Scaffold_BN000184F unplaced-scaffold na na PGSD01000032.1 = NW_019369780.1 Primary Assembly 58700 na Unplaced_Scaffold_BN225 unplaced-scaffold na na PGSD01000033.1 = NW_019369820.1 Primary Assembly 31087 na Unplaced_Scaffold_BN000187F unplaced-scaffold na na PGSD01000034.1 = NW_019369783.1 Primary Assembly 46663 na Unplaced_Scaffold_BN000210F unplaced-scaffold na na PGSD01000035.1 = NW_019369806.1 Primary Assembly 17137 na Unplaced_Scaffold_BN000161F unplaced-scaffold na na PGSD01000036.1 = NW_019369761.1 Primary Assembly 155049 na Unplaced_Scaffold_BN000181F unplaced-scaffold na na PGSD01000037.1 = NW_019369777.1 Primary Assembly 60072 na Unplaced_Scaffold_BN000214F unplaced-scaffold na na PGSD01000038.1 = NW_019369810.1 Primary Assembly 8248 na Unplaced_Scaffold_BN236 unplaced-scaffold na na PGSD01000039.1 = NW_019369827.1 Primary Assembly 99800 na Unplaced_Scaffold_BN000193F unplaced-scaffold na na PGSD01000040.1 = NW_019369789.1 Primary Assembly 34010 na Unplaced_Scaffold_BN227 unplaced-scaffold na na PGSD01000041.1 = NW_019369821.1 Primary Assembly 23737 na Unplaced_Scaffold_BN000200F unplaced-scaffold na na PGSD01000042.1 = NW_019369796.1 Primary Assembly 27368 na Unplaced_Scaffold_BN000162F unplaced-scaffold na na PGSD01000043.1 = NW_019369762.1 Primary Assembly 143722 na Unplaced_Scaffold_BN000195F unplaced-scaffold na na PGSD01000044.1 = NW_019369791.1 Primary Assembly 32340 na Unplaced_Scaffold_BN000156F unplaced-scaffold na na PGSD01000045.1 = NW_019369759.1 Primary Assembly 185351 na Unplaced_Scaffold_BN000023F unplaced-scaffold na na PGSD01000046.1 = NW_019369755.1 Primary Assembly 38912 na Unplaced_Scaffold_BN000175F unplaced-scaffold na na PGSD01000047.1 = NW_019369771.1 Primary Assembly 87425 na Unplaced_Scaffold_BN000208F unplaced-scaffold na na PGSD01000048.1 = NW_019369804.1 Primary Assembly 18688 na Unplaced_Scaffold_BN000169F unplaced-scaffold na na PGSD01000049.1 = NW_019369766.1 Primary Assembly 109567 na Unplaced_Scaffold_BN000168F unplaced-scaffold na na PGSD01000050.1 = NW_019369765.1 Primary Assembly 116473 na Unplaced_Scaffold_BN000205F unplaced-scaffold na na PGSD01000051.1 = NW_019369801.1 Primary Assembly 22354 na Unplaced_Scaffold_BN000197F unplaced-scaffold na na PGSD01000052.1 = NW_019369793.1 Primary Assembly 32033 na Unplaced_Scaffold_BN232 unplaced-scaffold na na PGSD01000053.1 = NW_019369825.1 Primary Assembly 37286 na Unplaced_Scaffold_BN000202F unplaced-scaffold na na PGSD01000054.1 = NW_019369798.1 Primary Assembly 17069 na Unplaced_Scaffold_BN000171F unplaced-scaffold na na PGSD01000055.1 = NW_019369768.1 Primary Assembly 107577 na Unplaced_Scaffold_BN000058F unplaced-scaffold na na PGSD01000056.1 = NW_019369757.1 Primary Assembly 36250 na Unplaced_Scaffold_BN000173F unplaced-scaffold na na PGSD01000057.1 = NW_019369769.1 Primary Assembly 101522 na Unplaced_Scaffold_BN000191F unplaced-scaffold na na PGSD01000058.1 = NW_019369787.1 Primary Assembly 37443 na Unplaced_Scaffold_BN000192F unplaced-scaffold na na PGSD01000059.1 = NW_019369788.1 Primary Assembly 34600 na Unplaced_Scaffold_BN222 unplaced-scaffold na na PGSD01000060.1 = NW_019369818.1 Primary Assembly 34729 na Unplaced_Scaffold_BN000194F unplaced-scaffold na na PGSD01000061.1 = NW_019369790.1 Primary Assembly 30394 na Unplaced_Scaffold_BN000180F unplaced-scaffold na na PGSD01000062.1 = NW_019369776.1 Primary Assembly 62143 na Unplaced_Scaffold_BN000207F unplaced-scaffold na na PGSD01000063.1 = NW_019369803.1 Primary Assembly 19782 na Unplaced_Scaffold_BN000217F unplaced-scaffold na na PGSD01000064.1 = NW_019369813.1 Primary Assembly 4420 na Unplaced_Scaffold_BN231 unplaced-scaffold na na PGSD01000065.1 = NW_019369824.1 Primary Assembly 33486 na Unplaced_Scaffold_BN000167F unplaced-scaffold na na PGSD01000066.1 = NW_019369764.1 Primary Assembly 114798 na Unplaced_Scaffold_BN000218F unplaced-scaffold na na PGSD01000067.1 = NW_019369814.1 Primary Assembly 2695 na Unplaced_Scaffold_BN000215F unplaced-scaffold na na PGSD01000068.1 = NW_019369811.1 Primary Assembly 6761 na Unplaced_Scaffold_BN000011F unplaced-scaffold na na PGSD01000069.1 = NW_019369754.1 Primary Assembly 6137 na Unplaced_Scaffold_BN000201F unplaced-scaffold na na PGSD01000070.1 = NW_019369797.1 Primary Assembly 26737 na Unplaced_Scaffold_BN000203F unplaced-scaffold na na PGSD01000071.1 = NW_019369799.1 Primary Assembly 25508 na Unplaced_Scaffold_BN000159F unplaced-scaffold na na PGSD01000072.1 = NW_019369760.1 Primary Assembly 162107 na Unplaced_Scaffold_BN000219F unplaced-scaffold na na PGSD01000073.1 = NW_019369815.1 Primary Assembly 2668 na Unplaced_Scaffold_BN000198F unplaced-scaffold na na PGSD01000074.1 = NW_019369794.1 Primary Assembly 27886 na Unplaced_Scaffold_BN000221F unplaced-scaffold na na PGSD01000075.1 = NW_019369817.1 Primary Assembly 864 na Unplaced_Scaffold_BN000174F unplaced-scaffold na na PGSD01000076.1 = NW_019369770.1 Primary Assembly 95997 na Unplaced_Scaffold_BN000182F unplaced-scaffold na na PGSD01000077.1 = NW_019369778.1 Primary Assembly 59606 na Unplaced_Scaffold_BN000190F unplaced-scaffold na na PGSD01000078.1 = NW_019369786.1 Primary Assembly 43024 na Unplaced_Scaffold_BN000189F unplaced-scaffold na na PGSD01000079.1 = NW_019369785.1 Primary Assembly 45528 na Unplaced_Scaffold_BN000213F unplaced-scaffold na na PGSD01000080.1 = NW_019369809.1 Primary Assembly 9862 na Unplaced_Scaffold_BN000010F unplaced-scaffold na na PGSD01000081.1 = NW_019369753.1 Primary Assembly 49292 na Unplaced_Scaffold_BN000186F unplaced-scaffold na na PGSD01000082.1 = NW_019369782.1 Primary Assembly 52342 na Unplaced_Scaffold_BN230 unplaced-scaffold na na PGSD01000083.1 = NW_019369823.1 Primary Assembly 126486 na Unplaced_Scaffold_BN000179F unplaced-scaffold na na PGSD01000084.1 = NW_019369775.1 Primary Assembly 64433 na Unplaced_Scaffold_BN000183F unplaced-scaffold na na PGSD01000085.1 = NW_019369779.1 Primary Assembly 58931 na Unplaced_Scaffold_BN229 unplaced-scaffold na na PGSD01000086.1 = NW_019369822.1 Primary Assembly 28121 na Unplaced_Scaffold_BN000178F unplaced-scaffold na na PGSD01000087.1 = NW_019369774.1 Primary Assembly 64861 na Unplaced_Scaffold_BN000188F unplaced-scaffold na na PGSD01000088.1 = NW_019369784.1 Primary Assembly 46000 na Unplaced_Scaffold_BN234 unplaced-scaffold na na PGSD01000089.1 = NW_019369826.1 Primary Assembly 27471 na Unplaced_Scaffold_BN000170F unplaced-scaffold na na PGSD01000090.1 = NW_019369767.1 Primary Assembly 109135 na Unplaced_Scaffold_BN000211F unplaced-scaffold na na PGSD01000091.1 = NW_019369807.1 Primary Assembly 15136 na Unplaced_Scaffold_BN000199F unplaced-scaffold na na PGSD01000092.1 = NW_019369795.1 Primary Assembly 27650 na Unplaced_Scaffold_BN000024F unplaced-scaffold na na PGSD01000093.1 = NW_019369756.1 Primary Assembly 97390 na Unplaced_Scaffold_BN000220F unplaced-scaffold na na PGSD01000094.1 = NW_019369816.1 Primary Assembly 1750 na Unplaced_Scaffold_BN000216F unplaced-scaffold na na PGSD01000095.1 = NW_019369812.1 Primary Assembly 6375 na Unplaced_Scaffold_BN000204F unplaced-scaffold na na PGSD01000096.1 = NW_019369800.1 Primary Assembly 23911 na Unplaced_Scaffold_BN000185F unplaced-scaffold na na PGSD01000097.1 = NW_019369781.1 Primary Assembly 55527 na Unplaced_Scaffold_BN000126F unplaced-scaffold na na PGSD01000098.1 = NW_019369758.1 Primary Assembly 13775 na Unplaced_Scaffold_BN000206F unplaced-scaffold na na PGSD01000099.1 = NW_019369802.1 Primary Assembly 22357 na Unplaced_Scaffold_BN000209F unplaced-scaffold na na PGSD01000100.1 = NW_019369805.1 Primary Assembly 17450 na Unplaced_Scaffold_BN000212F unplaced-scaffold na na PGSD01000101.1 = NW_019369808.1 Primary Assembly 13486 na MT assembled-molecule MT Mitochondrion na <> NC_011379.1 non-nuclear 16646 na