# Assembly name: Lsat_Salinas_v11 # Organism name: Lactuca sativa (garden lettuce) # Infraspecific name: cultivar=Salinas # Taxid: 4236 # BioSample: SAMN33010172 # BioProject: PRJNA173551 # Submitter: Lettuce Genome Sequencing Consortium # Date: 2022-11-23 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: NBSK02 # Assembly method: Hifiasm v. Dec-2011; BioNano v. Dec-2011; Hi-C v. Dec-2011 # Expected final version: yes # Genome coverage: 35.0x # Sequencing technology: PacBio Sequel II # RefSeq category: Representative Genome # GenBank assembly accession: GCA_002870075.4 # RefSeq assembly accession: GCF_002870075.4 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_002870085.4 GCF_002870085.4 Primary Assembly ## GCF_002909115.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Lsat_1_v11_chr1 assembled-molecule 1 Chromosome CM022518.2 = NC_056623.2 Primary Assembly 252620903 na Lsat_1_v11_chr2 assembled-molecule 2 Chromosome CM022519.2 = NC_056624.2 Primary Assembly 236378258 na Lsat_1_v11_chr3 assembled-molecule 3 Chromosome CM022520.2 = NC_056625.2 Primary Assembly 324658466 na Lsat_1_v11_chr4 assembled-molecule 4 Chromosome CM022521.2 = NC_056626.2 Primary Assembly 410295809 na Lsat_1_v11_chr5 assembled-molecule 5 Chromosome CM022522.2 = NC_056627.2 Primary Assembly 371842284 na Lsat_1_v11_chr6 assembled-molecule 6 Chromosome CM022523.2 = NC_056628.2 Primary Assembly 206656949 na Lsat_1_v11_chr7 assembled-molecule 7 Chromosome CM022524.2 = NC_056629.2 Primary Assembly 209897964 na Lsat_1_v11_chr8 assembled-molecule 8 Chromosome CM022525.2 = NC_056630.2 Primary Assembly 343517054 na Lsat_1_v11_chr9 assembled-molecule 9 Chromosome CM022526.2 = NC_056631.2 Primary Assembly 229423371 na Lsat_1_v11_unplaced_01 unplaced-scaffold na na NBSK02000010.1 = NW_026440193.1 Primary Assembly 645216 na Lsat_1_v11_unplaced_02 unplaced-scaffold na na NBSK02000011.1 = NW_026440194.1 Primary Assembly 434859 na Lsat_1_v11_unplaced_03 unplaced-scaffold na na NBSK02000012.1 = NW_026440195.1 Primary Assembly 379429 na Lsat_1_v11_unplaced_04 unplaced-scaffold na na NBSK02000013.1 = NW_026440196.1 Primary Assembly 147621 na Lsat_1_v11_unplaced_05 unplaced-scaffold na na NBSK02000014.1 = NW_026440197.1 Primary Assembly 146833 na Lsat_1_v11_unplaced_06 unplaced-scaffold na na NBSK02000015.1 = NW_026440198.1 Primary Assembly 142972 na Lsat_1_v11_unplaced_07 unplaced-scaffold na na NBSK02000016.1 = NW_026440199.1 Primary Assembly 141102 na Lsat_1_v11_unplaced_08 unplaced-scaffold na na NBSK02000017.1 = NW_026440200.1 Primary Assembly 137994 na Lsat_1_v11_unplaced_09 unplaced-scaffold na na NBSK02000018.1 = NW_026440201.1 Primary Assembly 97179 na Lsat_1_v11_unplaced_10 unplaced-scaffold na na NBSK02000019.1 = NW_026440202.1 Primary Assembly 91139 na Lsat_1_v11_unplaced_11 unplaced-scaffold na na NBSK02000020.1 = NW_026440203.1 Primary Assembly 79398 na Lsat_1_v11_unplaced_12 unplaced-scaffold na na NBSK02000021.1 = NW_026440204.1 Primary Assembly 77107 na Lsat_1_v11_unplaced_13 unplaced-scaffold na na NBSK02000022.1 = NW_026440205.1 Primary Assembly 74232 na Lsat_1_v11_unplaced_14 unplaced-scaffold na na NBSK02000023.1 = NW_026440206.1 Primary Assembly 73498 na Lsat_1_v11_unplaced_15 unplaced-scaffold na na NBSK02000024.1 = NW_026440207.1 Primary Assembly 70479 na Lsat_1_v11_unplaced_16 unplaced-scaffold na na NBSK02000025.1 = NW_026440208.1 Primary Assembly 68244 na Lsat_1_v11_unplaced_17 unplaced-scaffold na na NBSK02000026.1 = NW_026440209.1 Primary Assembly 66922 na Lsat_1_v11_unplaced_18 unplaced-scaffold na na NBSK02000027.1 = NW_026440210.1 Primary Assembly 64886 na Lsat_1_v11_unplaced_19 unplaced-scaffold na na NBSK02000028.1 = NW_026440211.1 Primary Assembly 61078 na Lsat_1_v11_unplaced_20 unplaced-scaffold na na NBSK02000029.1 = NW_026440212.1 Primary Assembly 58774 na Lsat_1_v11_unplaced_21 unplaced-scaffold na na NBSK02000030.1 = NW_026440213.1 Primary Assembly 58216 na Lsat_1_v11_unplaced_22 unplaced-scaffold na na NBSK02000031.1 = NW_026440214.1 Primary Assembly 56036 na Lsat_1_v11_unplaced_23 unplaced-scaffold na na NBSK02000032.1 = NW_026440215.1 Primary Assembly 52173 na Lsat_1_v11_unplaced_26 unplaced-scaffold na na NBSK02000033.1 = NW_026440216.1 Primary Assembly 40017 na Lsat_1_v11_unplaced_27 unplaced-scaffold na na NBSK02000034.1 = NW_026440217.1 Primary Assembly 39589 na Lsat_1_v11_unplaced_28 unplaced-scaffold na na NBSK02000035.1 = NW_026440218.1 Primary Assembly 39100 na Lsat_1_v11_unplaced_29 unplaced-scaffold na na NBSK02000036.1 = NW_026440219.1 Primary Assembly 38872 na Lsat_1_v11_unplaced_30 unplaced-scaffold na na NBSK02000037.1 = NW_026440220.1 Primary Assembly 38629 na Lsat_1_v11_unplaced_31 unplaced-scaffold na na NBSK02000038.1 = NW_026440221.1 Primary Assembly 36750 na Lsat_1_v11_unplaced_32 unplaced-scaffold na na NBSK02000039.1 = NW_026440222.1 Primary Assembly 35041 na Lsat_1_v11_unplaced_33 unplaced-scaffold na na NBSK02000040.1 = NW_026440223.1 Primary Assembly 34312 na Lsat_1_v11_unplaced_34 unplaced-scaffold na na NBSK02000041.1 = NW_026440224.1 Primary Assembly 33979 na Lsat_1_v11_unplaced_35 unplaced-scaffold na na NBSK02000042.1 = NW_026440225.1 Primary Assembly 33649 na Lsat_1_v11_unplaced_36 unplaced-scaffold na na NBSK02000043.1 = NW_026440226.1 Primary Assembly 33039 na Lsat_1_v11_unplaced_37 unplaced-scaffold na na NBSK02000044.1 = NW_026440227.1 Primary Assembly 32772 na Lsat_1_v11_unplaced_38 unplaced-scaffold na na NBSK02000045.1 = NW_026440228.1 Primary Assembly 32241 na Lsat_1_v11_unplaced_39 unplaced-scaffold na na NBSK02000046.1 = NW_026440229.1 Primary Assembly 31869 na Lsat_1_v11_unplaced_40 unplaced-scaffold na na NBSK02000047.1 = NW_026440230.1 Primary Assembly 31866 na Lsat_1_v11_unplaced_42 unplaced-scaffold na na NBSK02000048.1 = NW_026440231.1 Primary Assembly 30259 na Lsat_1_v11_unplaced_43 unplaced-scaffold na na NBSK02000049.1 = NW_026440232.1 Primary Assembly 28780 na Lsat_1_v11_unplaced_44 unplaced-scaffold na na NBSK02000050.1 = NW_026440233.1 Primary Assembly 28111 na Lsat_1_v11_unplaced_45 unplaced-scaffold na na NBSK02000051.1 = NW_026440234.1 Primary Assembly 27696 na Lsat_1_v11_unplaced_47 unplaced-scaffold na na NBSK02000052.1 = NW_026440235.1 Primary Assembly 27592 na Lsat_1_v11_unplaced_48 unplaced-scaffold na na NBSK02000053.1 = NW_026440236.1 Primary Assembly 27571 na Lsat_1_v11_unplaced_49 unplaced-scaffold na na NBSK02000054.1 = NW_026440237.1 Primary Assembly 27192 na Lsat_1_v11_unplaced_51 unplaced-scaffold na na NBSK02000055.1 = NW_026440238.1 Primary Assembly 27022 na Lsat_1_v11_unplaced_52 unplaced-scaffold na na NBSK02000056.1 = NW_026440239.1 Primary Assembly 26607 na Lsat_1_v11_unplaced_53 unplaced-scaffold na na NBSK02000057.1 = NW_026440240.1 Primary Assembly 26020 na Lsat_1_v11_unplaced_55 unplaced-scaffold na na NBSK02000058.1 = NW_026440241.1 Primary Assembly 25624 na Lsat_1_v11_unplaced_56 unplaced-scaffold na na NBSK02000059.1 = NW_026440242.1 Primary Assembly 25434 na Lsat_1_v11_unplaced_58 unplaced-scaffold na na NBSK02000060.1 = NW_026440243.1 Primary Assembly 24513 na Lsat_1_v11_unplaced_59 unplaced-scaffold na na NBSK02000061.1 = NW_026440244.1 Primary Assembly 24086 na Lsat_1_v11_unplaced_60 unplaced-scaffold na na NBSK02000062.1 = NW_026440245.1 Primary Assembly 23932 na Lsat_1_v11_unplaced_61 unplaced-scaffold na na NBSK02000063.1 = NW_026440246.1 Primary Assembly 21783 na Lsat_1_v11_unplaced_64 unplaced-scaffold na na NBSK02000064.1 = NW_026440247.1 Primary Assembly 19930 na Lsat_1_v11_unplaced_65 unplaced-scaffold na na NBSK02000065.1 = NW_026440248.1 Primary Assembly 19881 na Lsat_1_v11_unplaced_66 unplaced-scaffold na na NBSK02000066.1 = NW_026440249.1 Primary Assembly 19470 na Lsat_1_v11_unplaced_67 unplaced-scaffold na na NBSK02000067.1 = NW_026440250.1 Primary Assembly 19356 na Lsat_1_v11_unplaced_68 unplaced-scaffold na na NBSK02000068.1 = NW_026440251.1 Primary Assembly 19215 na Lsat_1_v11_unplaced_69 unplaced-scaffold na na NBSK02000069.1 = NW_026440252.1 Primary Assembly 18478 na Lsat_1_v11_unplaced_70 unplaced-scaffold na na NBSK02000070.1 = NW_026440253.1 Primary Assembly 18115 na Lsat_1_v11_unplaced_71 unplaced-scaffold na na NBSK02000071.1 = NW_026440254.1 Primary Assembly 17902 na Lsat_1_v11_unplaced_72 unplaced-scaffold na na NBSK02000072.1 = NW_026440255.1 Primary Assembly 17346 na Lsat_1_v11_unplaced_73 unplaced-scaffold na na NBSK02000073.1 = NW_026440256.1 Primary Assembly 17164 na Lsat_1_v11_unplaced_74 unplaced-scaffold na na NBSK02000074.1 = NW_026440257.1 Primary Assembly 15981 na Lsat_1_v11_unplaced_75 unplaced-scaffold na na NBSK02000075.1 = NW_026440258.1 Primary Assembly 15647 na Lsat_1_v11_unplaced_76 unplaced-scaffold na na NBSK02000076.1 = NW_026440259.1 Primary Assembly 15274 na Lsat_1_v11_unplaced_77 unplaced-scaffold na na NBSK02000077.1 = NW_026440260.1 Primary Assembly 15231 na Lsat_1_v11_unplaced_78 unplaced-scaffold na na NBSK02000078.1 = NW_026440261.1 Primary Assembly 15228 na Lsat_1_v11_unplaced_79 unplaced-scaffold na na NBSK02000079.1 = NW_026440262.1 Primary Assembly 15194 na Lsat_1_v11_unplaced_80 unplaced-scaffold na na NBSK02000080.1 = NW_026440263.1 Primary Assembly 14270 na Lsat_1_v11_unplaced_81 unplaced-scaffold na na NBSK02000081.1 = NW_026440264.1 Primary Assembly 13607 na Lsat_1_v11_unplaced_82 unplaced-scaffold na na NBSK02000082.1 = NW_026440265.1 Primary Assembly 12604 na Lsat_1_v11_unplaced_83 unplaced-scaffold na na NBSK02000083.1 = NW_026440266.1 Primary Assembly 12584 na Lsat_1_v11_unplaced_84 unplaced-scaffold na na NBSK02000084.1 = NW_026440267.1 Primary Assembly 12311 na Lsat_1_v11_unplaced_85 unplaced-scaffold na na NBSK02000085.1 = NW_026440268.1 Primary Assembly 10837 na Lsat_1_v11_unplaced_86 unplaced-scaffold na na NBSK02000086.1 = NW_026440269.1 Primary Assembly 6925 na Lsat_1_v11_unplaced_87 unplaced-scaffold na na NBSK02000087.1 = NW_026440270.1 Primary Assembly 6067 na Lsat_1_v11_unplaced_88 unplaced-scaffold na na NBSK02000088.1 = NW_026440271.1 Primary Assembly 5783 na Lsat_1_v11_unplaced_89 unplaced-scaffold na na NBSK02000089.1 = NW_026440272.1 Primary Assembly 4600 na Lsat_1_v11_unplaced_90 unplaced-scaffold na na NBSK02000090.1 = NW_026440273.1 Primary Assembly 2609 na Lsat_1_v11_unplaced_91 unplaced-scaffold na na NBSK02000091.1 = NW_026440274.1 Primary Assembly 1227 na MT assembled-molecule MT Mitochondrion na <> NC_042756.1 non-nuclear 363324 na Pltd assembled-molecule Pltd Chloroplast na <> NC_007578.1 non-nuclear 152765 na